mRNA_P-wetherbeei_contig138.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig138.4.1
Unique NamemRNA_P-wetherbeei_contig138.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Match: D8LR30_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR30_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 6.210e-33
Identity = 67/149 (44.97%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  269 REDIAFLIIYCNGVDVNKPDSATGLSPLHHCAQLNLPTTAHKLVTWGADVNARDKVMMTPLMLAARLGHTIMVELLGGQLRADVDAQDRAGWTALHYAVSCDRGGAVEALLALDADATIADAKGKLPADWAQYLDFGELCDELERAQKR 715
            REDIA LII  +  D+N PD+ TGLSPLH    L+L ++A KL   GA++NA DKV MTPLML  RLGH  +V++L     A++D  D+AGWT L YA   +    V  LL   AD    D +G    DW +++ FGE C    R + +
Sbjct:    4 REDIADLIISIDDTDINAPDTITGLSPLHKTVLLDLGSSAQKLAFRGANINATDKVGMTPLMLGCRLGHEAIVDMLVDVFGAEIDPADKAGWTCLFYATYHNESNIVHYLLMHGADTDHKDKRGMTAIDWGEHMRFGETCAIFSRFESQ 152          
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Match: A0A6V2QUB7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QUB7_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 1.070e-16
Identity = 48/79 (60.76%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  233 GRTALSLAVKAMREDIAFLIIYCNGVDVNKPDSATGLSPLHHCAQLNLPTTAHKLVTWGADVNARDKVMMTPLMLAARL 469
            GRTALSLAVK  RED+A LI+     DV+KPD ATGL+PLHHC QLNL  T  KL     +V+  DK  MTPLMLA  L
Sbjct:  133 GRTALSLAVKEKREDLADLILGNRHCDVDKPDRATGLAPLHHCVQLNLLATIQKLSWRECEVDPADKKGMTPLMLACAL 211          
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Match: UPI001601A2C9 (ankyrin-3-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601A2C9)

HSP 1 Score: 65.5 bits (158), Expect = 2.680e-8
Identity = 55/135 (40.74%), Postives = 67/135 (49.63%), Query Frame = 2
Query:  311 DVNKPDSATGLSPLHHCA-----QLNLPTTAHKLVTWGADVNARDKVMMTPLMLAARLGHTIMVELLGGQLRADVDAQDRA-GWTALHYAVSCDRGGAVEALLALDADATIADAKGKLPADWAQYLDFGELCDEL 697
            DVN   SA G   +H  A     QL+L  T   +   GADVNA +   +TPL LAA LGH I VE+L   L AD +  D   GWT LHYA S +    V  LL   AD  +    G  P D A+  D  + C E+
Sbjct:  252 DVNNEKSAEGDLLIHIAAAGGVDQLDLLMTL--VCIQGADVNAYNGKGLTPLCLAADLGHAITVEVLICILGADPNKCDLVRGWTPLHYAASHNYMDIVSCLLKRGADVNLESYNGLRPDDVAKRYDAAD-CTEI 383          
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Match: A0A1I8IYK5_9PLAT (Protein kinase domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IYK5_9PLAT)

HSP 1 Score: 62.0 bits (149), Expect = 4.090e-7
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  239 TALSLAVKAMREDIAFLIIYCNGVDVNKPDSATGLSPLHHCAQLNLPTTAHKLVTWGADVNARDKVMMTPLMLAARLGH-TIMVELLGGQLRADVDAQDRAGWTALHYAVSCDR 577
            T L  A  A   D+  L++   G  ++  DS +G S LH  A+ N       L+   A+V+ARD+V  TPLML A LGH T+  +LL  +  AD D Q   G+TA+H A  C+R
Sbjct:  688 TPLMRAAWANLPDMIRLLLKA-GARLDDSDSESGASALHIAARENASAAVAALIDAQANVDARDRVRRTPLMLCAALGHRTVGEQLL--RAGADTDLQRDTGYTAMHLA--CER 796          
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Match: A0A2T7PQ45_POMCA (RING-type E3 ubiquitin transferase n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PQ45_POMCA)

HSP 1 Score: 61.6 bits (148), Expect = 4.870e-7
Identity = 49/144 (34.03%), Postives = 72/144 (50.00%), Query Frame = 2
Query:  236 RTALSLAVKAMREDIAFLIIYCNGVDVNKPDSATGLSPLHHCAQLNLPTTAHKLVTWGADVNARDKVMMTPLMLAARLG-HTIMVELLG-----GQLRADVDAQDRAGWTALHYAVSCDRGGAVEALLALDADATIADAKGKLP 649
            +TAL  A+++ R++IA L+I+  G  ++  D+    S +H  A  ++ T    LV  GAD+NA+DK M TPL++A + G H  M   L      G    ++ A        LH A    +   VEALL L AD    D+ G  P
Sbjct:  535 KTALGAAIESKRDEIACLLIH-RGAHLSYVDNNKS-SYVHLAAYYDMATVIGLLVAQGADINAKDKDMDTPLLIAVQRGSHRAMEAFLSMSGIDGGANVNLHASGMMYNCPLHIACHMAKLQTVEALLELGADVNAQDSSGDTP 676          
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Match: A0A8J1Y0K7_OWEFU (Ofus.G112493 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y0K7_OWEFU)

HSP 1 Score: 61.6 bits (148), Expect = 5.300e-7
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 2
Query:  347 PLHHCAQLNLPTTAHKLVTWGADVNARDKVMMTPLMLAARLGHTIMVELLGGQLRADVDAQDRAGWTALHYAVS 568
            P+H    +N P T   L+  G DVNARD   MTPL+LAA  G +++   L  QL+AD+  QD  G T +H AVS
Sbjct:  375 PIHRAVLVNQPDTVAYLIEQGTDVNARDGRSMTPLILAATRGSSMVARRLI-QLKADITCQDEQGRTFIHAAVS 447          
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Match: A0A7Z6TNS3_9ACTN (Uncharacterized protein n=6 Tax=Streptomyces TaxID=1883 RepID=A0A7Z6TNS3_9ACTN)

HSP 1 Score: 58.5 bits (140), Expect = 6.800e-7
Identity = 42/131 (32.06%), Postives = 65/131 (49.62%), Query Frame = 2
Query:  233 GRTALSLAVKAMREDIAFLIIYCNGVDVNKPDSATGLSPLHHCAQLNLPTTAHKLVTWGADVNA-RDKVMMTPLMLAARLGHTIMVELLGGQLRADVDAQDRAGWTALHYAVSCDRGGAVEALLALDADAT 622
            GR+AL LAV+    D+  L++        +      L+P+   A          L+  G    A RD++   PL+LAA LGHT +V++L  +  AD++ +D  G + L +AVS  +  AV  LL   A+ T
Sbjct:    5 GRSALDLAVQEGHADVVRLLLAAGAEPEGRAGPYHELTPMTEAAMFGRAAVVEALIDAGVSTGAQRDRIPYVPLVLAATLGHTDVVDVLLDR-GADIEDRDFKGRSPLEWAVSFGQPAAVRLLLRRGAEPT 134          
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Match: A0A2U4EU85_9SPIR (Ankyrin repeat-containing protein n=4 Tax=Brachyspira hampsonii TaxID=1287055 RepID=A0A2U4EU85_9SPIR)

HSP 1 Score: 60.1 bits (144), Expect = 1.280e-6
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 2
Query:  305 GVDVNKPDSATGLSPLHHCAQLNLPTTAHKLVTWGADVNARDKVMMTPLMLAARLGHTIMVELLGGQLRADVDAQDRAGWTALHYAVSCDRGGAVEALLALDADATIADAKGKLPAD 655
            G DVN  D     + L+  A  N     + L+     +N++ K  +TPL +A    +   ++ L   L+AD++AQD  GWTAL+YA + ++  A + LL L AD  IA+  G  PAD
Sbjct:  341 GADVNASDEEGWSTFLYAAAFGNSSMLRNILLKNRNLINSKTKDNVTPLHMAVVYDNIDNIKYLVRNLKADINAQDDDGWTALYYAAANNKKEAYDLLLRLGADKNIANNDGLKPAD 457          
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Match: UPI000D72A07E (ankyrin repeat domain-containing protein 2-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D72A07E)

HSP 1 Score: 57.4 bits (137), Expect = 1.340e-6
Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  194 NLAMQVAQLFSL*GRTALSLAVKAMR--EDIAFLIIYCNGVDVNKPDSATGLSPLHHCAQLNLPTTAHKLVTWGADVNARDKVMMTPLMLAA-RLGHTIMVELLGGQLRADVDAQDRAGWTALHYA 562
            NL   V+++F L  R+ L  A++A R  E+I  L+I   G DV   D     S +H  A  +LP     L   GADVNARDK + TPL  A  R  H  M  LL  +   DV A++R  +TALH A
Sbjct:   21 NLGANVSRIFGL-YRSPLGAALEANRKEENICILLIE-RGADVRVVDGLDR-SYMHIAATYDLPNVIGVLAARGADVNARDKHLDTPLHNAVQRKNHRAMEALLEVK-GIDVRAKNRLDYTALHLA 142          
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Match: E9HX73_DAPPU (Uncharacterized protein (Fragment) n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9HX73_DAPPU)

HSP 1 Score: 58.2 bits (139), Expect = 4.060e-6
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  233 GRTALSLAVKAMR-EDIAFLIIYCNGVDVNKPDSATGLSPLHHCAQLNLPTTAHK-LVTWGADVNARDKVM--MTPLMLAARLGHTIMV---ELLGGQLRADVDAQDRAGWTALHYAVSCDRGGAVEALLALDADATIADAKGKLP----ADWAQYL 670
            G  AL LA K     D  F I+     ++N+ DS  G +PLH CA L    TA K L+   A VNA  +    +T L LAA L   I +   E++ G+ +A+++AQD+ G TALH A+       ++ LL   ADATI +  G +P    ADW Q +
Sbjct:   45 GEIALHLAAKWPDIGDELFRILLGKTTEINRLDSK-GRTPLH-CALLFKCVTASKILLNKDATVNAEAQTCHNLTALHLAA-LWSDIPINLFEIILGKSKANLNAQDKYGRTALHCAILSKSETLIDKLLDAKADATIHEQDGLIPLHLAADWRQPI 198          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig138.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR30_ECTSI6.210e-3344.97Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6V2QUB7_HETAK1.070e-1660.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI001601A2C92.680e-840.74ankyrin-3-like n=1 Tax=Branchiostoma floridae TaxI... [more]
A0A1I8IYK5_9PLAT4.090e-739.47Protein kinase domain-containing protein n=1 Tax=M... [more]
A0A2T7PQ45_POMCA4.870e-734.03RING-type E3 ubiquitin transferase n=1 Tax=Pomacea... [more]
A0A8J1Y0K7_OWEFU5.300e-745.95Ofus.G112493 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A7Z6TNS3_9ACTN6.800e-732.06Uncharacterized protein n=6 Tax=Streptomyces TaxID... [more]
A0A2U4EU85_9SPIR1.280e-635.04Ankyrin repeat-containing protein n=4 Tax=Brachysp... [more]
UPI000D72A07E1.340e-640.48ankyrin repeat domain-containing protein 2-like n=... [more]
E9HX73_DAPPU4.060e-637.58Uncharacterized protein (Fragment) n=1 Tax=Daphnia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig138contigP-wetherbeei_contig138:11677..12696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LR30
PFAMsAnk_2,Ank_4
Model size843
Max annot lvl2759|Eukaryota
KEGG koko:K21415
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.04e-35
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-06_004570.1
Descriptionprotein ubiquitination
Cds size492
COG categoryI
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.785721-UTR-P-wetherbeei_contig138:11676..119411683185997.785721-UTR-P-wetherbeei_contig138:11676..11941Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig138 11677..11941 +
1683185997.8158548-UTR-P-wetherbeei_contig138:12610..126961683185997.8158548-UTR-P-wetherbeei_contig138:12610..12696Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig138 12611..12696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.7998927-CDS-P-wetherbeei_contig138:11941..121091683185997.7998927-CDS-P-wetherbeei_contig138:11941..12109Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig138 11942..12109 +
1683185997.8079998-CDS-P-wetherbeei_contig138:12286..126101683185997.8079998-CDS-P-wetherbeei_contig138:12286..12610Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig138 12287..12610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig138.4.1prot_P-wetherbeei_contig138.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig138 11942..12610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig138.4.1

>prot_P-wetherbeei_contig138.4.1 ID=prot_P-wetherbeei_contig138.4.1|Name=mRNA_P-wetherbeei_contig138.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MREDIAFLIIYCNGVDVNKPDSATGLSPLHHCAQLNLPTTAHKLVTWGAD
VNARDKVMMTPLMLAARLGHTIMVELLGGQLRADVDAQDRAGWTALHYAV
SCDRGGAVEALLALDADATIADAKGKLPADWAQYLDFGELCDELERAQKR
PLASNMGPGTLML*
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mRNA from alignment at P-wetherbeei_contig138:11677..12696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig138.4.1 ID=mRNA_P-wetherbeei_contig138.4.1|Name=mRNA_P-wetherbeei_contig138.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1020bp|location=Sequence derived from alignment at P-wetherbeei_contig138:11677..12696+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGCTCAAGCGTTGGCGTCCAGACAGGATGAACGACTACGATGACGAG GTGAGGTGTGTGCATTTCTAAACGGATCGGCAAACTGTTCGGCCATCATT CTATTCTCCTGAGGCGAATACGTTTGCACGAAATACATTTGTTAAAAAGG CATCATTTCGAGAGGCTGGCGGCCTTCGTTTTAAGGCAAAAGAAACCTAG CCATGCAGGTCGCCCAGCTCTTTTCCCTCTAGGGGCGGACGGCGTTATCG CTGGCGGTGAAAGCGATGCGCGAGGACATTGCCTTCTTGATCATTTATTG CAACGGCGTCGACGTGAACAAGCCCGACAGCGCGACGGGCCTCTCGCCGC TGCACCACTGCGCGCAGCTGAACCTCCCCACCACGGCCCACAAGCTCGTG ACGTGGGGCGCCGACGTCAACGCCAGGGACAAGGTGACTGAATTTTTCCA GAAGTGCTTTTCAACTGCGGCTGCACTCTGAAAAATGGTCGCTGAAGTCT GCCCTCCATTTCGTTAAGCCTTAGAAAGAGCTTCACATCGTTTGAAAAGC TGAACATTATCATTTTGTTGCCCACCAATCCCTGTTGCCGGCGCACGCAC CTGCCGATAGGTGATGATGACGCCGCTGATGCTGGCGGCGCGCCTCGGCC ATACCATCATGGTGGAGTTGCTCGGCGGCCAGCTGCGAGCAGATGTGGAC GCGCAAGACCGCGCCGGATGGACGGCGCTGCACTACGCCGTCTCCTGCGA CCGCGGCGGTGCCGTTGAGGCGCTGCTGGCCCTCGACGCCGACGCGACGA TCGCTGATGCAAAGGGAAAGCTGCCGGCAGACTGGGCGCAATATTTGGAC TTCGGGGAGCTGTGCGACGAGCTGGAGAGGGCACAGAAGCGGCCGTTGGC GTCGAACATGGGCCCGGGGACGCTCATGCTTTGAGAGCGGTGCGAGTGGG CGTGCCGCAAGGAAGGATCGACGGGAAAGCTTCCAATGATCAGCCTATGA GACATGCCTATCGCTGAACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig138:11677..12696+

>mRNA_P-wetherbeei_contig138.4.1 ID=mRNA_P-wetherbeei_contig138.4.1|Name=mRNA_P-wetherbeei_contig138.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig138:11677..12696+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGAGGACATTGCCTTCTTGATCATTTATTGCAACGGCGTCGACGT
GAACAAGCCCGACAGCGCGACGGGCCTCTCGCCGCTGCACCACTGCGCGC
AGCTGAACCTCCCCACCACGGCCCACAAGCTCGTGACGTGGGGCGCCGAC
GTCAACGCCAGGGACAAGGTGATGATGACGCCGCTGATGCTGGCGGCGCG
CCTCGGCCATACCATCATGGTGGAGTTGCTCGGCGGCCAGCTGCGAGCAG
ATGTGGACGCGCAAGACCGCGCCGGATGGACGGCGCTGCACTACGCCGTC
TCCTGCGACCGCGGCGGTGCCGTTGAGGCGCTGCTGGCCCTCGACGCCGA
CGCGACGATCGCTGATGCAAAGGGAAAGCTGCCGGCAGACTGGGCGCAAT
ATTTGGACTTCGGGGAGCTGTGCGACGAGCTGGAGAGGGCACAGAAGCGG
CCGTTGGCGTCGAACATGGGCCCGGGGACGCTCATGCTTTGA
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