mRNA_P-wetherbeei_contig1378.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1378.4.1
Unique NamemRNA_P-wetherbeei_contig1378.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Match: A0A3P3YIS8_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YIS8_PLABS)

HSP 1 Score: 63.5 bits (153), Expect = 4.890e-10
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   13 HTDLVRLILEFLSTES-PEAARVLERDSGLTLVLYGPDIEFLRELILDGRWDDA 171
            H +++ LIL++L     PEA R LER+S LTL  YG +++FLR+L+LDG+WDDA
Sbjct:    7 HDEIILLILDYLKRHGCPEAMRCLERESMLTLETYGREVDFLRQLVLDGQWDDA 60          
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Match: A0A443SR89_9ACAR (WD repeat-containing protein 47-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SR89_9ACAR)

HSP 1 Score: 59.3 bits (142), Expect = 1.510e-8
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   10 SHTDLVRLILEFLSTESPEAARV-LERDSGLTLVLYGPDIEFLRELILDGRWDDAVILIEVVLLFLLFQSEE 222
            S  D++R+ILEFLS  +   +++ +ER++G+   LY  D+ FLR+LILDG+WDDA+  IE + +   F S+E
Sbjct:   10 SEEDVIRMILEFLSNRALSISQLSVERETGVYNGLYSDDLLFLRQLILDGQWDDALEFIEPLSIINGFNSKE 81          
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Match: A0A813VHE8_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813VHE8_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 3.530e-7
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   19 DLVRLILEFLSTESPEAARV-LERDSGLTLVLYGPDIEFLRELILDGRWDDAV 174
            D+++LILEFLS      A + LER++G+    Y  DI FLR+LILDG+WDDA+
Sbjct:   19 DIIKLILEFLSNRDLNIAMLDLERETGIINHQYSDDILFLRQLILDGQWDDAL 71          
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Match: A0A7R9PU16_9ACAR (Hypothetical protein (Fragment) n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9PU16_9ACAR)

HSP 1 Score: 55.1 bits (131), Expect = 4.760e-7
Identity = 25/65 (38.46%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 MAASHTDLVRLILEFLSTESPEAARV-LERDSGLTLVLYGPDIEFLRELILDGRWDDAVILIEVV 192
            +A    D++RL+LEFLS      +++ +ER++GL   ++  D+ FLR+LILDG+WDD +  ++ +
Sbjct:    3 LAVREEDVIRLVLEFLSVRELSISQLSVERETGLNNGVFSDDLLFLRQLILDGQWDDVLAFVQPI 67          
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Match: R7UJY5_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UJY5_CAPTE)

HSP 1 Score: 54.7 bits (130), Expect = 6.450e-7
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   16 TDLVRLILEFLSTESPEAARV-LERDSGLTLVLYGPDIEFLRELILDGRWDDAV 174
            TD+V+LILEFL       + + LER+SGL   +Y  D+ FLR+LILDG+WDD +
Sbjct:    8 TDVVKLILEFLQNRQLNISMLNLERESGLINGVYSDDMLFLRQLILDGQWDDIL 61          
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Match: A0A3P6SPC1_LITSI (Uncharacterized protein n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6SPC1_LITSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.610e-7
Identity = 25/63 (39.68%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 MAASHTDLVRLILEFLSTESPEAARV-LERDSGLTLVLYGPDIEFLRELILDGRWDDAVILIE 186
            ++ S  D+++++LEFL T S   A++ LER++G+    +  D+ FLR+L+LDG+WD+A+  +E
Sbjct:    7 ISVSERDIIKIVLEFLETRSLHIAQLSLERETGIINGDFSDDVLFLRQLVLDGQWDNALDFVE 69          
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Match: V4BAF8_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BAF8_LOTGI)

HSP 1 Score: 54.3 bits (129), Expect = 8.780e-7
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 MAASHTDLVRLILEFLSTESPEAARV-LERDSGLTLVLYGPDIEFLRELILDGRWDDAV 174
            +  + TD+VRL+ EFL       + + LER++G+   +Y  D+ FLR+LILDG+WDD +
Sbjct:    6 LVVNETDIVRLVSEFLQNRQLNISMMSLERETGIINGMYSDDMLFLRQLILDGQWDDVI 64          
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Match: T1L4M5_TETUR (Uncharacterized protein n=2 Tax=Tetranychus urticae TaxID=32264 RepID=T1L4M5_TETUR)

HSP 1 Score: 54.3 bits (129), Expect = 9.010e-7
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   19 DLVRLILEFLSTESPEAARV-LERDSGLTLVLYGPDIEFLRELILDGRWDDAVILIE 186
            D+VR++LEFL+      +++ LER++G+   LY  D+ FLR+LILDG+WDD +  IE
Sbjct:   16 DVVRMVLEFLNNRELSISQLSLERETGVHNGLYSDDLLFLRQLILDGQWDDCLQFIE 72          
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Match: A0A498S2V2_ACAVI (Uncharacterized protein n=1 Tax=Acanthocheilonema viteae TaxID=6277 RepID=A0A498S2V2_ACAVI)

HSP 1 Score: 54.3 bits (129), Expect = 9.040e-7
Identity = 27/60 (45.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   10 SHTDLVRLILEFLSTESPEAARV-LERDSGLTLVLYGPDIEFLRELILDGRWDDAVILIE 186
            S  D++++ILEFL T S   A++ LER++G+    +  D+ FLR+LILDG+WD+A+  +E
Sbjct:   10 SEKDVIKIILEFLETRSLHIAQLSLERETGIINGDFSDDVLFLRQLILDGQWDNALDFVE 69          
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Match: A0A267GU53_9PLAT (Uncharacterized protein (Fragment) n=5 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GU53_9PLAT)

HSP 1 Score: 54.3 bits (129), Expect = 9.070e-7
Identity = 26/58 (44.83%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   16 TDLVRLILEFLSTESPEAARV-LERDSGLTLVLYGPDIEFLRELILDGRWDDAVILIE 186
            +D+++L+LEFL++     + + LER++G+   +Y  D+ FLR+LILDG+WDDA+ L+E
Sbjct:   20 SDIIKLLLEFLNSRDLCISLLSLERETGIVNGIYSEDMLFLRQLILDGQWDDALELVE 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1378.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3P3YIS8_PLABS4.890e-1053.70Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A443SR89_9ACAR1.510e-844.44WD repeat-containing protein 47-like protein (Frag... [more]
A0A813VHE8_9BILA3.530e-752.83Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A7R9PU16_9ACAR4.760e-738.46Hypothetical protein (Fragment) n=1 Tax=Medioppia ... [more]
R7UJY5_CAPTE6.450e-751.85Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A3P6SPC1_LITSI6.610e-739.68Uncharacterized protein n=1 Tax=Litomosoides sigmo... [more]
V4BAF8_LOTGI8.780e-742.37Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
T1L4M5_TETUR9.010e-747.37Uncharacterized protein n=2 Tax=Tetranychus urtica... [more]
A0A498S2V2_ACAVI9.040e-745.00Uncharacterized protein n=1 Tax=Acanthocheilonema ... [more]
A0A267GU53_9PLAT9.070e-744.83Uncharacterized protein (Fragment) n=5 Tax=Macrost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1378contigP-wetherbeei_contig1378:6659..6880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog32264.tetur39g00590.1
Preferred nameWDR47
PFAMsWD40
Model size222
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.45e-07
EggNOG OGsKOG0641@1|root,KOG0641@2759|Eukaryota,38EMU@33154|Opisthokonta,3BFE1@33208|Metazoa,3CSR5@33213|Bilateria,41UC7@6656|Arthropoda
DescriptionC-terminal to LisH motif.
Cds size222
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.2277384-CDS-P-wetherbeei_contig1378:6658..68801683185997.2277384-CDS-P-wetherbeei_contig1378:6658..6880Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1378 6659..6880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1378.4.1prot_P-wetherbeei_contig1378.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1378 6659..6880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1378.4.1

>prot_P-wetherbeei_contig1378.4.1 ID=prot_P-wetherbeei_contig1378.4.1|Name=mRNA_P-wetherbeei_contig1378.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
MAASHTDLVRLILEFLSTESPEAARVLERDSGLTLVLYGPDIEFLRELIL
DGRWDDAVILIEVVLLFLLFQSEE
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mRNA from alignment at P-wetherbeei_contig1378:6659..6880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1378.4.1 ID=mRNA_P-wetherbeei_contig1378.4.1|Name=mRNA_P-wetherbeei_contig1378.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig1378:6659..6880+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCTCTCATACCGATCTCGTGCGACTGATCCTGGAATTCCTCTC GACAGAGTCGCCAGAGGCTGCGCGAGTACTGGAGCGAGACTCGGGGTTGA CCTTAGTGCTTTACGGTCCTGACATCGAGTTCTTGCGCGAGCTGATCTTA GACGGACGATGGGACGATGCAGTTATCCTCATCGAGGTTGTTTTACTTTT CCTGCTCTTCCAATCGGAAGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1378:6659..6880+

>mRNA_P-wetherbeei_contig1378.4.1 ID=mRNA_P-wetherbeei_contig1378.4.1|Name=mRNA_P-wetherbeei_contig1378.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig1378:6659..6880+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCTCTCATACCGATCTCGTGCGACTGATCCTGGAATTCCTCTC
GACAGAGTCGCCAGAGGCTGCGCGAGTACTGGAGCGAGACTCGGGGTTGA
CCTTAGTGCTTTACGGTCCTGACATCGAGTTCTTGCGCGAGCTGATCTTA
GACGGACGATGGGACGATGCAGTTATCCTCATCGAGGTTGTTTTACTTTT
CCTGCTCTTCCAATCGGAAGAA
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