mRNA_P-wetherbeei_contig13723.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13723.1.1
Unique NamemRNA_P-wetherbeei_contig13723.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Match: D8LPN4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPN4_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 7.440e-88
Identity = 152/301 (50.50%), Postives = 202/301 (67.11%), Query Frame = 1
Query:    1 RPEPGGAETEELRRSYRATMLLACDQPSEALLAFLGQRAREITSAAFKVFWPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEWPPVCETFVKLVALSGNGSGGPNGSGXXXXXXXSQYQSSPPGKWKLYSGLAEWRLLPLLARGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIGHSPEFIDGLVDAAI--GTPTAGSGAAXXXXXXXGLERRTDAARTLVGLVEKAAEENLVCNPGRVMAFTTQNNT--VPNRLNSVKPLLHERLQARFADLCTA 891
            RPEPG   +E+L+RS+RATMLLA  +PS+    FL ++ARE+T+A  KVFWP A+GS HHAC V+DY+LR +AD+V + +GR+++SLER+LGPMLRW E+ PV ET VKL+     G G   G+        + YQ+S P KW+LYSGLA+WR L  +A  +   + S ++AS+CADLLLEVVDRLS D+NGELLLQPIG+  E +DGL   A+  G P               LERRTD+ARTL+G+ +KAA+ N+V    R   + +Q  T  VPNRL+SV+ LLHE+L+      C A
Sbjct:  113 RPEPGDEVSEQLKRSFRATMLLANSEPSDNHRTFLAKKARELTAAVLKVFWPSAKGSLHHACCVLDYLLRSYADEVFETLGRSRESLERHLGPMLRWAEYSPVSETMVKLLTFPSVG-GAVTGAA-------ATYQTSAPSKWRLYSGLADWRFLLRVAENIFDRECSDSYASACADLLLEVVDRLSSDDNGELLLQPIGYCKELVDGLAAMAVDQGLP---------------LERRTDSARTLLGITQKAADANIVFVNARTSMYDSQPTTTVVPNRLSSVRELLHEQLRTWLPKFCVA 390          
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Match: A0A835Z422_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z422_9STRA)

HSP 1 Score: 228 bits (581), Expect = 1.350e-64
Identity = 138/307 (44.95%), Postives = 177/307 (57.65%), Query Frame = 1
Query:    1 RPEPGGAETEELRRSYRATMLLACDQPSEALLAFLGQRAREITSAAFKVFWPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEWPPVCETFVKLVALSGNGSGGPNGSGXXXXXXXSQYQSSPPGKWKLYSGLAEWRLLPLLA-----------RGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIGHSPEFIDGLVDAAIGTPTAGSGAAXXXXXXXGLERRTDAARTLVGLVEKAAEENLVCNPGRVMAFT--TQNNTVPNRLNSVKPLLHERLQARFADL 882
            RPEPG   T EL+RSYRATMLL+ DQPS ALL+FL +RAR IT++ FKVFW  A+GS HHACRV+D++LR  ADQ+                             T+      SG    G  G+          YQ++P  +WK+YS LA+WR L +LA           R V AA  +PAHAS+CAD+LLE V+ LS DENGELLLQP+ H PE ++GLVD A+    AG+             +RTDAAR LVGL++KAA + + C   +VM  T   Q   +PNRL SV+ L+H  L+ R AD+
Sbjct:  120 RPEPGDELTYELKRSYRATMLLSSDQPSNALLSFLAKRARVITTSIFKVFWRSAKGSLHHACRVLDHLLRHQADQL-----------------------------TYPSAAGCSGMVGAGMRGN-FNGATCAIPYQATPQSRWKMYSSLADWRFLLVLASHVYAAQYPDVRTVPAAQSTPAHASACADMLLEAVEVLSADENGELLLQPLAHCPELVNGLVDIAL---AAGADRT----------QRTDAARVLVGLIQKAAPDQIAC---QVMRPTGPQQAALIPNRLKSVRTLMHRLLRVRLADI 380          
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Match: A0A3F2S3Z1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3Z1_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.180e-49
Identity = 107/288 (37.15%), Postives = 162/288 (56.25%), Query Frame = 1
Query:   25 TEELRRSYRATMLLACDQPSEALLAFLGQRAREITSAAFKVFWPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEWPPVCETFVKLVALSGNGSGGPNGSGXXXXXXXSQYQSSPPGKWKLYSGLAEWRLLPLLARGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIGHSPEFIDGLVDAAIGTPTAGSGAAXXXXXXXGLERRTDAARTLVGLVEKAAEENLVCNP-GRVMAF-TTQNNTVPNRLNSVKPLLHERLQARFADL 882
            T EL  SYRATMLL  D  ++ALL FLG +++ +T   F VF   ++G+  HACR+IDY+LRFH D V D +G + +++ERY+G ML + E  PV E F+ LV         P+ +          Y S+PP KW  +  LAEW++L +LA  V + +    H    AD+ +E++DRL+ DENG+LLLQP  + PE ++GL+ AA+  P     A         + +RT A + +  L++K+  E +   P     +F  T  N VPN+L  ++  ++E ++    DL
Sbjct:  105 TPELLASYRATMLLTNDDTADALLTFLGDKSKLLTRCIFPVFQRNSKGNLRHACRIIDYLLRFHLDDVYDVLGEDSQTVERYMGSMLPYLEHAPVAELFLTLVCK-------PHSAAVMRF-----YASTPPKKWAFFRALAEWKVLLVLANHVCSVEFGETHTIGAADVFVELLDRLAADENGQLLLQPAAYIPELLEGLIRAAV-EPEDNKSATPQRT----VGQRTAAMKCVFRLLQKSTLEKVQGPPTSPYQSFGATIVNLVPNQLAPLREKIYELVEQHLGDL 375          
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Match: A0A0P1ALB9_PLAHL (Armadillo-type fold n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ALB9_PLAHL)

HSP 1 Score: 182 bits (462), Expect = 5.060e-49
Identity = 105/288 (36.46%), Postives = 164/288 (56.94%), Query Frame = 1
Query:   25 TEELRRSYRATMLLACDQPSEALLAFLGQRAREITSAAFKVFWPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEWPPVCETFVKLVALSGNGSGGPNGSGXXXXXXXSQYQSSPPGKWKLYSGLAEWRLLPLLARGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIGHSPEFIDGLVDAAIGTPTAGSGAAXXXXXXXGLERRTDAARTLVGLVEKAAEENLVCNP-GRVMAF-TTQNNTVPNRLNSVKPLLHERLQARFADL 882
            T EL  SYRATM+LA D  ++ALL FLG +++ +T   F+VF   ++GS  HACRVIDY+LRF+ D V D +G+N K+++RY+G +L +    PV E F+ LV    + +                Y S+PP KW  +  LAEW++L +LA  V + +    H    AD+ +E+VDRL+ DENG+LLLQP  + PE ++GL+ AA+ +    S A           +RT A + +  L++K++ E +   P     +F  T  N VPN+L+ ++  ++  ++    +L
Sbjct:   89 TPELVASYRATMMLANDDTADALLTFLGNKSKLLTRCLFQVFQNDSQGSLRHACRVIDYLLRFNLDDVYDVLGKNAKTVQRYMGALLPYLGDAPVAELFLTLVCKPHSAT------------IMRLYASTPPKKWAFFRSLAEWKMLLVLASHVCSNEYGETHTIGAADVFVELVDRLAADENGQLLLQPAAYCPEVLEGLIRAAVESEDDNSTAVQRTAG-----QRTAAIKCVYRLLQKSSLEKVQGPPTSPYQSFGATIVNLVPNQLSPLREKIYTLVEQHLGEL 359          
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Match: A0A2P4X1A8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X1A8_9STRA)

HSP 1 Score: 184 bits (466), Expect = 6.110e-49
Identity = 106/288 (36.81%), Postives = 164/288 (56.94%), Query Frame = 1
Query:   25 TEELRRSYRATMLLACDQPSEALLAFLGQRAREITSAAFKVFWPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEWPPVCETFVKLVALSGNGSGGPNGSGXXXXXXXSQYQSSPPGKWKLYSGLAEWRLLPLLARGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIGHSPEFIDGLVDAAIGTPTAGSGAAXXXXXXXGLERRTDAARTLVGLVEKAAEENLVCNP-GRVMAF-TTQNNTVPNRLNSVKPLLHERLQARFADL 882
            T ELR SYRATMLL  D  ++ALL FLG +++ +T   F  F   A+G+  H CRVID +LRF+ D V D +G++ K+++RY+G ML + E  PV E F+ LV         P+ +          Y S+PP KW  +  LAEW++L +LA  V + +   AH    AD+ +E++DRL+ DENG+LLLQP  + PE ++GL+ AA+    + S A         + +RT A + +  L++K+  E +   P     +F  T  N VPN+L+ ++  ++E ++    +L
Sbjct:  437 TPELRTSYRATMLLTNDDTADALLTFLGDKSKLLTRCLFPAFQRDAKGNLRHVCRVIDQLLRFYLDDVYDVLGKDAKTVQRYMGAMLPYLEHAPVAELFLTLVCK-------PHSAAVMRF-----YASTPPKKWAFFRALAEWKVLLVLANHVCSVEYEEAHTIGAADVFIELLDRLAADENGQLLLQPAAYCPELLEGLIRAAVEPEDSKSKAPQRT-----VGQRTAAMKCVFRLLQKSMLEKVQGPPTSPYQSFGATIVNLVPNQLSPLREKIYELVELHLGEL 707          
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Match: A0A3M6VW11_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VW11_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.010e-48
Identity = 104/288 (36.11%), Postives = 162/288 (56.25%), Query Frame = 1
Query:   25 TEELRRSYRATMLLACDQPSEALLAFLGQRAREITSAAFKVFWPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEWPPVCETFVKLVALSGNGSGGPNGSGXXXXXXXSQYQSSPPGKWKLYSGLAEWRLLPLLARGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIGHSPEFIDGLVDAAIGTPTAGSGAAXXXXXXXGLERRTDAARTLVGLVEKAAEENLVCNP-GRVMAF-TTQNNTVPNRLNSVKPLLHERLQARFADL 882
            TEEL +SYRATMLL  D  +EALL FLG +++ +T   F+VF   A+G+  HACRVID +LRF+ D V D +G++  ++ RY+G ML + E  PV E F+ LV         P+ +          Y S+PP KW  +  L+EW++L +LA  V + +    H    AD+ +E++DRL+ DENG+LLLQP  + PE ++GL+ AA+    +             + +RT A + +  L++K+  E +   P     +F  T  N VPN+L  ++  ++E ++    +L
Sbjct:   94 TEELVKSYRATMLLTNDDTAEALLTFLGDKSKLLTRCLFRVFQCDAKGNLRHACRVIDQLLRFYLDDVYDVLGKDASTVARYMGAMLPYLEHAPVAELFLTLVCK-------PHSAAAMRF-----YTSTPPKKWAFFRALSEWKVLLVLANHVCSTEYGETHTVGAADVFVELLDRLAADENGQLLLQPAAYCPELLEGLIRAAVELEDS------KKTMQRSVGQRTAAMKCVFRLLQKSTLEKVQGPPTSPYQSFGATIVNLVPNQLGPLREKIYELVEQHLGEL 363          
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Match: M4C5A3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C5A3_HYAAE)

HSP 1 Score: 180 bits (456), Expect = 2.850e-48
Identity = 105/288 (36.46%), Postives = 163/288 (56.60%), Query Frame = 1
Query:   25 TEELRRSYRATMLLACDQPSEALLAFLGQRAREITSAAFKVFWPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEWPPVCETFVKLVALSGNGSGGPNGSGXXXXXXXSQYQSSPPGKWKLYSGLAEWRLLPLLARGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIGHSPEFIDGLVDAAIGTPTAGSGAAXXXXXXXGLERRTDAARTLVGLVEKAAEENLVCNP-GRVMAF-TTQNNTVPNRLNSVKPLLHERLQARFADL 882
            T EL  SYRATMLL  D  +EALL FLG +++ +T   F VF   A+G+  HACRVID +LRF+ D V D +G++ K++ERY+G ML + E+ PV E F+ ++         P+ +          Y S+PP KW  +  LAEW++L +LA  V + +    H+   AD+ +E++DRL+ DENG+LLLQP  +  E ++GL+ AA+  P     A         + +RT A + +  L++K+  E +   P     +F  T  N VPN+L  ++  +++ ++    DL
Sbjct:   98 TPELLTSYRATMLLTNDDTAEALLTFLGDKSKLLTRCFFAVFDGDAQGNLRHACRVIDQLLRFYLDDVYDVLGKDAKTVERYMGAMLPYLEYAPVAELFLTIICK-------PHSAAVMRF-----YTSTPPKKWAFFRALAEWKVLLVLATHVWSREYGETHSIGAADVFVELLDRLAADENGQLLLQPAAYCSELLEGLISAAV-EPDCNKAAPQRT-----VAQRTAAMKCVFRLLQKSKLEKVQGPPTSPYQSFGATIVNLVPNQLEPLREKIYQLVEQHLGDL 367          
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Match: W7TU88_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU88_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.230e-46
Identity = 105/289 (36.33%), Postives = 146/289 (50.52%), Query Frame = 1
Query:   34 LRRSYRATMLLACDQPSEALLAFLGQRAREITSAAFKVFWPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEWPPVCETFVKLVALSGNGSGGPNGSGXXXXXXXSQYQSSPPGKWKLYSGLAEWRLLPLLARGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIGHSPEFIDGLVDAAIGTPTAGSGAAXXXXXXXGLERRTDAARTLVGLVEKAAEENLVCNPGRVMAFTTQNNT-----VPNRLNSVKPLLHERLQARFADLC 885
            L RSY A +LLA  +PS  LL FL ++   IT A F+V  P +RG  HHACRV+DY+LR   +  L  VG N+ S++R+LGPM+R    PPV E  +K++      +               QYQ SP  KW+L+  LA+WR L +LA  V+ +   P   S+ AD  ++++D L+ DENGELLLQPI H PE + GL D A+                    +R D  R L+ L  ++ E  +  +   +  F   +       VPN+  SV  L    L     DLC
Sbjct:  248 LSRSYHAMLLLASAEPSVQLLKFLSKKITVITDAMFEVLSPRSRGCIHHACRVMDYLLRSLTEPFLRHVGCNRGSVKRFLGPMVRNLAEPPVAELLMKILTAPSPAN------------QMGQYQISPVAKWRLFESLADWRFLIVLAGEVSISGGHPQQVSAAADFFIDLLDSLATDENGELLLQPIAHCPELLGGLFDRALDLNAPSL-------------QRGDCVRVLLALAGRSCEPEIPASSMALTHFQIPSGLASLPMVPNQFRSVHTLFRSTLATHLRDLC 511          
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Match: A0A2D4CJ12_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJ12_PYTIN)

HSP 1 Score: 174 bits (440), Expect = 6.340e-46
Identity = 102/282 (36.17%), Postives = 153/282 (54.26%), Query Frame = 1
Query:   25 TEELRRSYRATMLLACDQPSEALL---AFLGQRAREITSAAFKVFWPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEWPPVCETFVKLVALSGNGSGGPNGSGXXXXXXXSQYQSSPPGKWKLYSGLAEWRLLPLLARGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIGHSPEFIDGLVDAAIGTPTAGSGAAXXXXXXXGLERRTDAARTLVGLVEKAAEENLVCNP-GRVMAF-TTQNNTVPNRLNSVKPLLHE 855
            T EL  SYRATMLL  +  SEA++    FL ++++ I    F +F   +RG+  H CRVID +LR H D V D VG    +++RY+G ML++ E  PV E F+ L+    N +                Y SSP  KW+L+  L+EW++L +LA  V   D S  H    AD+ +E++DRLS DENG LLLQP+ H P+ ++GL+D A+    +               +RT A R ++ L++++ +E +   P     +F  T  N VPN+L S++  + E
Sbjct:   94 TPELLASYRATMLLTNEDSSEAVIFAMPFLAKKSKLIAKCVFPIFQQNSRGNLRHGCRVIDRLLRLHLDDVYDVVGSTTATVKRYMGAMLQYIEHAPVAEVFLTLICKPHNAA------------LMRYYTSSPQKKWQLFRALSEWKVLLVLAEHVYGTDYSEDHNIGAADVFIELLDRLSADENGALLLQPVAHCPQLLEGLIDTAVDNQRSQG-------------QRTAAMRCVLRLLQRSTQEKVQGPPTSPYQSFGATIVNLVPNQLASLRENVFE 350          
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Match: A0A5D6Y2H7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2H7_9STRA)

HSP 1 Score: 172 bits (435), Expect = 4.100e-45
Identity = 104/281 (37.01%), Postives = 153/281 (54.45%), Query Frame = 1
Query:   25 TEELRRSYRATMLLACDQPSEALLAFLGQRAREITSAAFKVFWPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEWPPVCETFVKLVALSGNGSGGPNGSGXXXXXXXSQYQSSPPGKWKLYSGLAEWRLLPLLARGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIGHSPEFIDGLVDAAIGTPTAGSGAAXXXXXXXGLERRTDAARTLVGLVEKAAEENLVCNPGRVMAFTTQNNTVPNRLNSVKPLLHERLQA 867
            T ELRRS+RATMLL  D  S+AL+ FL +++  +T   F VF   ARG+  HACRVIDY+LR + D V D VGR+  ++ RY+GPML + +   V E F+ +V    + +                Y SSPP KW  +  L++W+LL +LA  V +   S  H +  AD+ +E++DRL+ D+NG LLLQP  + PE + GLVDAA+  P    G            +RT A + +  L++K+  E +   P     + +   T+ N + +    L ER+ A
Sbjct:  113 TGELRRSFRATMLLTNDDASDALITFLPRKSALLTKCIFPVFQRDARGNLRHACRVIDYLLRMYLDDVYDVVGRDAATVARYMGPMLEFIDHAYVAEAFLTMVCKPHSAA------------LMRYYASSPPKKWAFFRALSDWKLLLVLAEHVHSRRYSEKHNAGAADVFVELLDRLAADDNGGLLLQPAAYCPELLAGLVDAAV-DPGRTPG------------QRTGAMKCVFRLLQKSTTEKVQGPP--TSPYQSFGGTIVNLVANQLAPLRERVFA 366          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13723.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPN4_ECTSI7.440e-8850.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z422_9STRA1.350e-6444.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3F2S3Z1_9STRA1.180e-4937.15Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A0P1ALB9_PLAHL5.060e-4936.46Armadillo-type fold n=1 Tax=Plasmopara halstedii T... [more]
A0A2P4X1A8_9STRA6.110e-4936.81Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A3M6VW11_9STRA2.010e-4836.11Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
M4C5A3_HYAAE2.850e-4836.46Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
W7TU88_9STRA1.230e-4636.33Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A2D4CJ12_PYTIN6.340e-4636.17Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A5D6Y2H7_9STRA4.100e-4537.01Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13723contigP-wetherbeei_contig13723:304..1736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPN4
Model size891
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.22e-88
EggNOG OGs2C50Y@1|root,2QTHY@2759|Eukaryota
Cds size891
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185995.5003366-CDS-P-wetherbeei_contig13723:303..4971683185995.5003366-CDS-P-wetherbeei_contig13723:303..497Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13723 304..497 -
1683185995.5113297-CDS-P-wetherbeei_contig13723:560..10321683185995.5113297-CDS-P-wetherbeei_contig13723:560..1032Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13723 561..1032 -
1683185995.519749-CDS-P-wetherbeei_contig13723:1511..17361683185995.519749-CDS-P-wetherbeei_contig13723:1511..1736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13723 1512..1736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13723.1.1prot_P-wetherbeei_contig13723.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13723 304..1736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13723.1.1

>prot_P-wetherbeei_contig13723.1.1 ID=prot_P-wetherbeei_contig13723.1.1|Name=mRNA_P-wetherbeei_contig13723.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=297bp
RPEPGGAETEELRRSYRATMLLACDQPSEALLAFLGQRAREITSAAFKVF
WPGARGSFHHACRVIDYMLRFHADQVLDCVGRNKKSLERYLGPMLRWTEW
PPVCETFVKLVALSGNGSGGPNGSGGGPNGSGSQYQSSPPGKWKLYSGLA
EWRLLPLLARGVTAADQSPAHASSCADLLLEVVDRLSKDENGELLLQPIG
HSPEFIDGLVDAAIGTPTAGSGAAAGGSGGGGLERRTDAARTLVGLVEKA
AEENLVCNPGRVMAFTTQNNTVPNRLNSVKPLLHERLQARFADLCTA
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mRNA from alignment at P-wetherbeei_contig13723:304..1736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13723.1.1 ID=mRNA_P-wetherbeei_contig13723.1.1|Name=mRNA_P-wetherbeei_contig13723.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1433bp|location=Sequence derived from alignment at P-wetherbeei_contig13723:304..1736- (Phaeothamnion wetherbeei SAG_119_79)
CGCCCGGAACCCGGCGGTGCGGAGACGGAGGAGCTGCGGCGGTCGTACCG CGCCACCATGCTGCTGGCGTGCGACCAGCCGTCCGAGGCGCTGCTGGCAT TTCTCGGGCAGCGAGCTCGCGAGATCACGTCGGCGGCCTTCAAGGTGTTC TGGCCCGGGGCGCGCGGCAGCTTCCACCACGCCTGCCGCGTCATCGACTA CATGCTGCGCTTCCACGCCGACCAGGTGCATCCAATTGAGATTTGTCTGC TGGCCTGGTTACAGCTACGGGCTGTTATGGATTGGTTGAGGGTGTTGATT AGAGAGCAATGGGGTAGTAAGACGTTTGTGAGAAAGAGGTGCAGGTGTTT TTCCATAGCCTTTAGAGACGCATAGTTTAGTGGTATCTTTTCGCATAACT TTCGTTACTTTAATGCAGATTCAAGAGTTCGTGGAGCTGCTTTCCAGTCG TTCAGGTGGAGGAAGTGTCCGTGGGAGGAAGGGTTGGCTGCGATTTGGTC GAGCTTTTGGAGAACGCTTTGGTTCTGCCTTATGGGCGCCGCCATCGCAG CCATTACCGGAGCGTGGTTTTCTCCCCTAGAAGGTGGAGTCGTACTGCGT TCCATCTCCGCCTGCTTACACCGCCATTGCGCGACTCGTTGCATTCCCCT GCCGCCTGGGTTGACTATGTTTGGTCTTTGGTTATGTTTTCTGCTCCTTA ACAGGTGCTGGACTGCGTCGGCCGCAACAAAAAGAGCCTCGAGCGATATC TCGGCCCGATGCTGCGGTGGACGGAGTGGCCGCCCGTCTGCGAGACATTT GTCAAGCTTGTCGCCCTCTCCGGCAACGGCAGCGGGGGCCCCAACGGCAG CGGCGGCGGGCCGAACGGAAGCGGCAGCCAATACCAATCATCACCGCCCG GCAAGTGGAAGCTCTACAGCGGCCTGGCGGAGTGGCGGCTGCTGCCACTC CTGGCGCGCGGTGTCACGGCGGCGGACCAGTCGCCGGCGCACGCGTCGAG CTGCGCCGACTTGCTTCTGGAAGTCGTGGACCGCCTTTCCAAGGACGAGA ACGGCGAACTGCTGCTGCAGCCGATCGGCCACAGCCCCGAATTCATCGAC GGCTTGGTCGATGCCGCCATCGGCACTCCCACGGCGGGCAGCGGCGCCGC GGCGGGCGGCAGCGGCGGCGGCGGCCGTGGCAGCGGCGGGAGTAGCGACG GCGGCAATTGTGGCGGTGGCGGCGGGGCGGCGCTGTCAGTGGAGCGGCGG ACGGACGCTGCACGGACGCTGGTCGGGCTCGTGGAGAAGGCGGCGGAGGA GAACCTGGTGTGCAACCCGGGTCGGGTGATGGCGTTCACGACACAGAATA ACACGGTGCCAAACCGCCTCAACTCAGTCAAGCCGCTGCTGCACGAGCGG CTGCAGGCGCGGTTCGCCGACCTGTGCACGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13723:304..1736-

>mRNA_P-wetherbeei_contig13723.1.1 ID=mRNA_P-wetherbeei_contig13723.1.1|Name=mRNA_P-wetherbeei_contig13723.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=891bp|location=Sequence derived from alignment at P-wetherbeei_contig13723:304..1736- (Phaeothamnion wetherbeei SAG_119_79)
CGCCCGGAACCCGGCGGTGCGGAGACGGAGGAGCTGCGGCGGTCGTACCG
CGCCACCATGCTGCTGGCGTGCGACCAGCCGTCCGAGGCGCTGCTGGCAT
TTCTCGGGCAGCGAGCTCGCGAGATCACGTCGGCGGCCTTCAAGGTGTTC
TGGCCCGGGGCGCGCGGCAGCTTCCACCACGCCTGCCGCGTCATCGACTA
CATGCTGCGCTTCCACGCCGACCAGGTGCTGGACTGCGTCGGCCGCAACA
AAAAGAGCCTCGAGCGATATCTCGGCCCGATGCTGCGGTGGACGGAGTGG
CCGCCCGTCTGCGAGACATTTGTCAAGCTTGTCGCCCTCTCCGGCAACGG
CAGCGGGGGCCCCAACGGCAGCGGCGGCGGGCCGAACGGAAGCGGCAGCC
AATACCAATCATCACCGCCCGGCAAGTGGAAGCTCTACAGCGGCCTGGCG
GAGTGGCGGCTGCTGCCACTCCTGGCGCGCGGTGTCACGGCGGCGGACCA
GTCGCCGGCGCACGCGTCGAGCTGCGCCGACTTGCTTCTGGAAGTCGTGG
ACCGCCTTTCCAAGGACGAGAACGGCGAACTGCTGCTGCAGCCGATCGGC
CACAGCCCCGAATTCATCGACGGCTTGGTCGATGCCGCCATCGGCACTCC
CACGGCGGGCAGCGGCGCCGCGGCGGGCGGCAGCGGCGGCGGCGGCCTGG
AGCGGCGGACGGACGCTGCACGGACGCTGGTCGGGCTCGTGGAGAAGGCG
GCGGAGGAGAACCTGGTGTGCAACCCGGGTCGGGTGATGGCGTTCACGAC
ACAGAATAACACGGTGCCAAACCGCCTCAACTCAGTCAAGCCGCTGCTGC
ACGAGCGGCTGCAGGCGCGGTTCGCCGACCTGTGCACGGCA
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