mRNA_P-wetherbeei_contig13538.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13538.1.1
Unique NamemRNA_P-wetherbeei_contig13538.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13538.1.1 vs. uniprot
Match: A0A271J9V9_9BACT (Uncharacterized protein n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A271J9V9_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.990e-5
Identity = 69/235 (29.36%), Postives = 94/235 (40.00%), Query Frame = 1 
Query:    1 GGEITLRGVTLSGCKAEL----GGGIFLSSGCNLTAADTTFRRNYASKDGGAVYGDEETTMNFERCVFDANNASD--------SGGGIYQYAFNPGGVNLTASTFLSNFA----------TGGLGGGIYARNVTVSGSNFTSNIAKEFGGALATFDDKGPVIDSSLFVKNKANVDGGAVRGPILDFQLAGGDQTTLLT--RSVFTSNVAVRYGGGVYT--SRLEVSDTVFTLNKS 627
            G E+ + G   S   A      GG + L+ G  LT A TTF RNYA   GGA++     T+     VF  N A           GG +Y      G V+LT S F SN A                           S +  +   + GGA+A   +    I +S F+ N+A   GGA+        L G      LT   S  T N +V  GGG+Y     LE+S +V + N++
Sbjct:  391 GAEVGISGAEFSDNDAAPSPGDGGAVHLADG-TLTLASTTFSRNYARNQGGALWVAAGATLTDHGSVFSENTARGLARQTPFLCGGAVY---VGGGTVDLTESMFTSNRAHTCRXXXXXXXXXXXXXXXXXXXXXXXSGYADDSQVD-GGAIAVVGEAAVTISTSEFIDNQAQSSGGAI------VALRGFSSVAPLTIEGSAVTGNFSVFGGGGLYAFGGTLEISTSVLSDNRT 614
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BLAST of mRNA_P-wetherbeei_contig13538.1.1 vs. uniprot
Match: UPI0016892D98 (hypothetical protein n=1 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI0016892D98)

HSP 1 Score: 55.5 bits (132), Expect = 4.520e-5
Identity = 65/228 (28.51%), Postives = 96/228 (42.11%), Query Frame = 1 
Query:    7 EITLRGVTLSGCKAE------LGGGIFLSSGCNLTAADTTFRRNYASKDGGA-VYGDEETTMNFERCVFDANNAS---------DSGGGIYQYAFNPGGVNLTASTFLSNFATGGLGGGIYA--RNVTVSGSNFTSNIAKE----------FGGALATFDDKGPVID-----SSLFVKNKANVDGGAVRGPILDFQLAGGDQTTLLTRSVFTSNVA-----VRYGGGV 576
             +TLRG+T++  K         GGGI       L   ++  R N+A+ DGG  ++    + +      FD NN +         + GGG      N   +N++ S+F  N  TG  GG I      +TVS S F SN   +          +GGA+     K  ++D     SS F  NK    GGA    +  +  +GGD  TL   +V  + VA     +  GGG+
Sbjct:   82 NVTLRGLTIANGKTTGVALDGAGGGIRTGINTTLNLQNSVVRNNFANGDGGGGLWASSGSNVTVTNSRFDYNNTNGYQAQGSVGERGGGAIAIGSNSS-LNVSGSSFTGN--TGINGGAINTVLSTLTVSTSTFKSNDTTKGAAFGPDTRGYGGAIYADGGKSAIVDTISITSSRFDSNKGAGQGGA----LFLYTYSGGDSITLKNSTVTGNYVAKDAQNLSLGGGL 302
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13538.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A271J9V9_9BACT1.990e-529.36Uncharacterized protein n=2 Tax=Bacteroidetes/Chlo... [more]
UPI0016892D984.520e-528.51hypothetical protein n=1 Tax=Oscillatoria sp. FACH... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13538contigP-wetherbeei_contig13538:987..1793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog745277.GRAQ_00399
Preferred nameyfaL
PFAMsAutotransporter,Chlam_PMP,PATR,Pertactin
Model size807
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K07279
KEGG TC1.B.12
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005623,GO:0007155,GO:0008150,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009986,GO:0009987,GO:0022610,GO:0031589,GO:0042597,GO:0042710,GO:0043708,GO:0043709,GO:0044010,GO:0044464,GO:0044764,GO:0050896,GO:0051704,GO:0090605,GO:0090609
Exons1
Evalue1.54e-10
EggNOG OGsCOG3468@1|root,COG4625@1|root,COG3468@2|Bacteria,COG4625@2|Bacteria,1R9B8@1224|Proteobacteria,1S1YA@1236|Gammaproteobacteria,3FG9W@34037|Rahnella
DescriptionProtein involved in pathogenesis and protein secretion by the type V secretion system
Cds size807
COG categoryMU
BRITEko00000,ko02000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.8314798-CDS-P-wetherbeei_contig13538:986..17931683185989.8314798-CDS-P-wetherbeei_contig13538:986..1793Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13538 987..1793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13538.1.1prot_P-wetherbeei_contig13538.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13538 987..1793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13538.1.1

>prot_P-wetherbeei_contig13538.1.1 ID=prot_P-wetherbeei_contig13538.1.1|Name=mRNA_P-wetherbeei_contig13538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=269bp
GGEITLRGVTLSGCKAELGGGIFLSSGCNLTAADTTFRRNYASKDGGAVY
GDEETTMNFERCVFDANNASDSGGGIYQYAFNPGGVNLTASTFLSNFATG
GLGGGIYARNVTVSGSNFTSNIAKEFGGALATFDDKGPVIDSSLFVKNKA
NVDGGAVRGPILDFQLAGGDQTTLLTRSVFTSNVAVRYGGGVYTSRLEVS
DTVFTLNKSNRGGGIHSSRATVSDSRLLNNTAGQQGGGIFLGGLEVNLTI
SRVELINCTALIAGGGIFL
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mRNA from alignment at P-wetherbeei_contig13538:987..1793-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13538.1.1 ID=mRNA_P-wetherbeei_contig13538.1.1|Name=mRNA_P-wetherbeei_contig13538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig13538:987..1793- (Phaeothamnion wetherbeei SAG_119_79)
GGTGGAGAGATCACCCTAAGAGGCGTCACCCTGTCGGGCTGCAAAGCCGA
GTTGGGAGGGGGGATCTTTCTGTCCTCCGGCTGCAACCTGACTGCCGCCG
ACACCACGTTTCGCCGCAACTATGCGTCAAAAGATGGCGGCGCTGTCTAC
GGCGACGAAGAAACCACAATGAACTTTGAACGCTGTGTTTTTGATGCCAA
CAATGCAAGCGATTCCGGAGGAGGCATATATCAGTACGCCTTCAATCCTG
GCGGCGTCAACCTTACGGCCTCGACGTTTCTGTCAAACTTTGCCACAGGA
GGGTTAGGAGGTGGTATCTATGCCCGCAACGTGACCGTGTCGGGGTCGAA
TTTTACGTCGAATATTGCCAAGGAGTTTGGCGGGGCGCTGGCGACATTCG
ACGACAAGGGCCCGGTGATCGACTCGAGCTTGTTTGTGAAAAACAAAGCG
AACGTAGATGGCGGCGCCGTTCGGGGGCCGATTTTGGACTTTCAGTTGGC
TGGTGGCGACCAGACGACGCTGCTCACCCGCTCCGTTTTCACAAGCAACG
TCGCGGTTCGCTATGGCGGGGGGGTATACACATCTCGGCTGGAAGTCAGC
GACACAGTTTTCACGCTAAACAAGTCCAACCGCGGCGGCGGCATCCACAG
CTCGCGGGCCACCGTCAGCGACTCGCGCCTATTAAACAACACTGCCGGAC
AGCAGGGAGGCGGAATCTTCCTTGGTGGGCTGGAAGTGAATCTGACGATC
TCCAGAGTGGAGCTGATCAACTGCACCGCCTTAATCGCCGGCGGCGGGAT
CTTCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13538:987..1793-

>mRNA_P-wetherbeei_contig13538.1.1 ID=mRNA_P-wetherbeei_contig13538.1.1|Name=mRNA_P-wetherbeei_contig13538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig13538:987..1793- (Phaeothamnion wetherbeei SAG_119_79)
GGTGGAGAGATCACCCTAAGAGGCGTCACCCTGTCGGGCTGCAAAGCCGA
GTTGGGAGGGGGGATCTTTCTGTCCTCCGGCTGCAACCTGACTGCCGCCG
ACACCACGTTTCGCCGCAACTATGCGTCAAAAGATGGCGGCGCTGTCTAC
GGCGACGAAGAAACCACAATGAACTTTGAACGCTGTGTTTTTGATGCCAA
CAATGCAAGCGATTCCGGAGGAGGCATATATCAGTACGCCTTCAATCCTG
GCGGCGTCAACCTTACGGCCTCGACGTTTCTGTCAAACTTTGCCACAGGA
GGGTTAGGAGGTGGTATCTATGCCCGCAACGTGACCGTGTCGGGGTCGAA
TTTTACGTCGAATATTGCCAAGGAGTTTGGCGGGGCGCTGGCGACATTCG
ACGACAAGGGCCCGGTGATCGACTCGAGCTTGTTTGTGAAAAACAAAGCG
AACGTAGATGGCGGCGCCGTTCGGGGGCCGATTTTGGACTTTCAGTTGGC
TGGTGGCGACCAGACGACGCTGCTCACCCGCTCCGTTTTCACAAGCAACG
TCGCGGTTCGCTATGGCGGGGGGGTATACACATCTCGGCTGGAAGTCAGC
GACACAGTTTTCACGCTAAACAAGTCCAACCGCGGCGGCGGCATCCACAG
CTCGCGGGCCACCGTCAGCGACTCGCGCCTATTAAACAACACTGCCGGAC
AGCAGGGAGGCGGAATCTTCCTTGGTGGGCTGGAAGTGAATCTGACGATC
TCCAGAGTGGAGCTGATCAACTGCACCGCCTTAATCGCCGGCGGCGGGAT
CTTCCTG
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