mRNA_P-wetherbeei_contig1349.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI) HSP 1 Score: 275 bits (703), Expect = 2.260e-92 Identity = 138/147 (93.88%), Postives = 144/147 (97.96%), Query Frame = 1
Query: 4 ASMPTGKPSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 444
+SM GKP+GIRA RKLR+HRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGV+LLALYK+KKEKPRS
Sbjct: 60 SSMGKGKPAGIRAGRKLRIHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA) HSP 1 Score: 269 bits (688), Expect = 5.470e-91 Identity = 135/145 (93.10%), Postives = 141/145 (97.24%), Query Frame = 1
Query: 10 MPTGKPSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 444
M GKPSGIRA RKLR+HRRN+RWASKDYNK+HSVTAMKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLN+TDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVS+LALYK KKEKPRS
Sbjct: 1 MGKGKPSGIRAGRKLRIHRRNQRWASKDYNKAHSVTAMKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE) HSP 1 Score: 256 bits (654), Expect = 8.360e-86 Identity = 131/141 (92.91%), Postives = 133/141 (94.33%), Query Frame = 1
Query: 22 KPSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 444
KPSGIR ARKLRVHRR +RWA K YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK RVQLIKN KKIAAFVPRDGCLNF DENDEVLISGFGRRGHAVGDIPGVRFKVVKV+GVSLLALYKEKKEKPRS
Sbjct: 5 KPSGIRCARKLRVHRRTQRWAQKSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE) HSP 1 Score: 255 bits (651), Expect = 5.210e-85 Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 1
Query: 25 PSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 444
P+GIR ARKLRVHRR +RW K YNKSHS+TAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKKIAAFVPRDGCLN+ DENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGVSLLALYK+KKEKPRS
Sbjct: 29 PAGIRCARKLRVHRRTQRWNQKSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Match: B8C1Z7_THAPS (RS23, ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS) HSP 1 Score: 249 bits (636), Expect = 4.330e-83 Identity = 123/142 (86.62%), Postives = 132/142 (92.96%), Query Frame = 1
Query: 19 GKPSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 444
GKP+GIR RKLR+HRRN+RW Y K+HSVTAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLN+ DENDEVL++GFGR GHAVGDIPGVRFK VKVAGVSLLALYKEKKEKPRS
Sbjct: 2 GKPAGIRTGRKLRIHRRNQRWHDLKYTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Match: W7TKK2_9STRA (40s ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA) HSP 1 Score: 249 bits (636), Expect = 4.640e-83 Identity = 124/145 (85.52%), Postives = 135/145 (93.10%), Query Frame = 1
Query: 10 MPTGKPSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 444
M GKP+G A RKLRVHRRNE+WASK +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNF DENDEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+K+KKEKPRS
Sbjct: 1 MGKGKPAGSNAGRKLRVHRRNEKWASKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Match: A0A5A8EIQ0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIQ0_CAFRO) HSP 1 Score: 248 bits (633), Expect = 1.330e-82 Identity = 125/145 (86.21%), Postives = 133/145 (91.72%), Query Frame = 1
Query: 10 MPTGKPSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 444
M GKP+GI+AARKLR HRR +RWA K YNKSHS+TAMKANP GG+SMAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKIAAFVPRDG LNF DENDEVLISGFGR GHAVGDIPGVRFKVVKVAGVSLLAL+K KKEKPRS
Sbjct: 1 MTRGKPAGIQAARKLRNHRREQRWAQKTYNKSHSITAMKANPFGGASMAKGIVLEKMGVEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGSLNFVDENDEVLISGFGRAGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRS 145
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Match: A0A7R9WFA5_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9WFA5_9STRA) HSP 1 Score: 247 bits (630), Expect = 3.560e-82 Identity = 123/142 (86.62%), Postives = 131/142 (92.25%), Query Frame = 1
Query: 19 GKPSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 444
GKP+GIR RKLR HRR +RW + Y K+HS+TAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLN+ DENDEVLISGFGR GHAVGDIPGVRFKV KVAGVSLLALYKEKKEKPRS
Sbjct: 2 GKPNGIRTGRKLRSHRRQQRWRDQKYCKAHSITAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLISGFGRSGHAVGDIPGVRFKVAKVAGVSLLALYKEKKEKPRS 143
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Match: A0A7S2WV04_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV04_9STRA) HSP 1 Score: 247 bits (631), Expect = 4.010e-82 Identity = 127/147 (86.39%), Postives = 136/147 (92.52%), Query Frame = 1
Query: 4 ASMPTGKPSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 444
A+M KPSGIRA RKLRVHRR +RWA+ Y KS+SVTA+KANP GG+ MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGVSLLAL+K KKEKPR+
Sbjct: 11 ATMGKHKPSGIRAGRKLRVHRRAQRWANLKYVKSNSVTALKANPFGGACMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRT 157
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Match: A0A8E8PJI4_9STRA (40S ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJI4_9STRA) HSP 1 Score: 246 bits (629), Expect = 5.410e-82 Identity = 124/145 (85.52%), Postives = 131/145 (90.34%), Query Frame = 1
Query: 10 MPTGKPSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 444
M G P+G+RAARKLR HRR +RWA K YNKSHSV AMKANPLGGSSMAKGIV+EKIGIEAKQPNSAIRKCVRVQLIKN KKI AFVP DGCLNF DENDEVL+SGFGR GHAVGDIPGVRFKVVKVAGVSLLAL+K KKEKPR+
Sbjct: 1 MSKGLPAGMRAARKLRTHRRKQRWAQKHYNKSHSVAAMKANPLGGSSMAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNSKKITAFVPNDGCLNFVDENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRA 145 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1349.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1349.3.1 >prot_P-wetherbeei_contig1349.3.1 ID=prot_P-wetherbeei_contig1349.3.1|Name=mRNA_P-wetherbeei_contig1349.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp MPTGKPSGIRAARKLRVHRRNERWASKDYNKSHSVTAMKANPLGGSSMAKback to top mRNA from alignment at P-wetherbeei_contig1349:2227..3312+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1349.3.1 ID=mRNA_P-wetherbeei_contig1349.3.1|Name=mRNA_P-wetherbeei_contig1349.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1086bp|location=Sequence derived from alignment at P-wetherbeei_contig1349:2227..3312+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1349:2227..3312+ >mRNA_P-wetherbeei_contig1349.3.1 ID=mRNA_P-wetherbeei_contig1349.3.1|Name=mRNA_P-wetherbeei_contig1349.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig1349:2227..3312+ (Phaeothamnion wetherbeei SAG_119_79)back to top |