mRNA_P-wetherbeei_contig13459.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13459.1.1
Unique NamemRNA_P-wetherbeei_contig13459.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Match: D7FW44_ECTSI (Aromatic amino acid permease n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW44_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 3.490e-44
Identity = 103/216 (47.69%), Postives = 133/216 (61.57%), Query Frame = 1
Query:   10 VCGMFVASNYLLLVAYISQGSNIVASVLGSEACGPFL--CVSQPALTPLLFGVVLGSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVEVGVLTATFDVAAAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLLWDAVILGQRTAPAISIDGGGAVG-----SAASGAVPALPLLVSVFSFAALVTSFWGATASL 636
            +C  F+ SNYLL+VAYI QG++ +  +   E CGP    C+    L PLLF  ++GS  L+ P     AAN ALV  IA SF GL+A GLP V+V +L  T D +  PAMLPVAL A  FQN+VP V K L GD + ++A+L  GSG+P+  Y+LW+AV+LG       S+D   AV       A +   PAL  LVSVFS +A++TSFWGA  SL
Sbjct:  147 MCAAFLMSNYLLMVAYICQGASSLP-LFRPEFCGPVFTSCMKDFHLAPLLFTGLVGSVSLWGPARFVEAANTALVGLIAISFGGLVATGLPRVDVALLGLTPDASTLPAMLPVALCALTFQNVVPAVSKNLNGDARKIKASLAIGSGLPLMTYILWNAVVLGSTG----SLDPNSAVEMVSPLDALAATSPALASLVSVFSISAIITSFWGAAFSL 357          
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Match: A0A836CN59_9STRA (Tryptophan/tyrosine permease family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN59_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.400e-42
Identity = 107/220 (48.64%), Postives = 128/220 (58.18%), Query Frame = 1
Query:    1 GAAVCGMFVASNYLLLVAYISQGSNIVASV-----LGSEACGPFLCVSQPALTPLLFGVVLGSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVEVGVLTATFDVAAAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLLWDAVILGQRTAPAISIDGGGAVGSAASGAVPALPLLVSVFSFAALVTSFWGATASLSEE 645
            GA V   F+A NYLL+VAYISQGS++V ++     LG     P       AL P+LF   +G   L+    A + AN ALV  I ASFA L+A G P V+   L      AA P +LPV L A  FQNIVPVV   L GDL  VRAAL  G+G+P+ MYL WDAV+LGQR  P   +  G A      G V AL   V+VFSFAALVTSF+G+  SL  E
Sbjct:  199 GALVGAGFIAKNYLLMVAYISQGSHVVGALPVFDGLGGGGAFPD---DAAALLPVLFAAAVGGFGLWGGARAVDGANAALVAVILASFAALVAAGAPHVDAAALLRGAAPAALPPVLPVILCAMTFQNIVPVVTTALGGDLPRVRAALVAGTGVPLLMYLTWDAVMLGQRAPPLAPLYDGAAAALGGGGGVDALGAAVAVFSFAALVTSFFGSCKSLMAE 415          
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Match: A0A7S0WN86_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WN86_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 7.670e-25
Identity = 78/212 (36.79%), Postives = 120/212 (56.60%), Query Frame = 1
Query:    7 AVCGMFVASNYLLLVAYISQGSNIVASVLGSEACGPFLCVSQPALTPLLFGVVLGSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVEVGVLTATFDVAAAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLLWDAVILGQRTAPAISIDGGGAVGSAASGAVPALPLLVSVFSFAALVTSFWGATASLSE 642
            AV  +++  +Y LLVAYIS+   +V   LG+ +              + F + +G+A    P A  +AAN+A+VV + A+FAGL+ +  P V+   L A    +  P  LPV   A V+QN+VPVV+K L  D++ VRAA+  GS +P+ M+L+W+AV+LG     +  +D   ++ +A  GA  +L   V  FSF A+VTS+ G    LS+
Sbjct:  148 AVSALYLFQHYCLLVAYISRAGELVGGALGTSS----------GAGSVGFALGVGTACALLPVAVLDAANSAMVVGVVATFAGLVVLVAPMVQASALLAPPVWSELPHALPVMALAFVYQNVVPVVVKDLGADVRRVRAAIVLGSLLPLAMFLVWEAVVLGAMGGASAGVDPLASL-AAQPGAAGSL---VEGFSFLAIVTSYIGFCLGLSD 345          
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Match: A0A6V1NZW3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NZW3_HETAK)

HSP 1 Score: 110 bits (274), Expect = 1.410e-24
Identity = 78/215 (36.28%), Postives = 115/215 (53.49%), Query Frame = 1
Query:    1 GAAVCGMFVASNYLLLVAYISQGSNIVASVL--GSEACGPFLCVSQPALTPLLFGVVLGSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVEVGVLTATFDVAAAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLLWDAVILGQRTAPAISIDGGGAVGSAA------SGAVPALPLLVSVFSFAALVTSFWG 621
            G A    ++  +Y LLVAY++QG  ++A +L  G +   P        L P+ F  + G    F   A   + NN  V  +  SF GLL +  PG+E+  L    D +AAP ++PV   A VF N+VPV++ QL+ D   +R A+  GS +P+GM+L W+AV+LG     A +  GG  V   A      SGA+  +   VS+FS  A++TSF+G
Sbjct:  144 GRAAGAAYLFIHYCLLVAYLAQGGALLADLLLPGQQQSLPEY------LGPVGFCAIFGGLLAFGSEALIESVNNVFVTIVITSFLGLLVLATPGIEISRLFVE-DWSAAPGVVPVTFVALVFHNVVPVIVTQLEADRAKIRQAVLVGSALPLGMFLAWNAVVLGSTDTAAAAAVGGVPVDPLATLRAGSSGAI--VGEAVSIFSLFAIITSFFG 349          
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Match: A0A7I4ABU8_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4ABU8_PHYPA)

HSP 1 Score: 102 bits (255), Expect = 2.300e-22
Identity = 84/220 (38.18%), Postives = 117/220 (53.18%), Query Frame = 1
Query:   13 CGMFVASNYLLLVAYISQGSNIVASVLGSEACGPFLCVSQPALTPLLFGVV-LGSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVEVGVLTATFDVAAAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLLWDAVILGQRTAPAISIDGGGAVGS---------AASGAVPALPLLVSVFSFAALVTSFWGATASLSE 642
            CG ++  +Y LLVAYI++ S+IV + +G       L VS    T  L G+   GS R+          N  LVV I  SF  L+ VG  G++   L  T +  A P  +PV   A V+QN+VPVV   L+GDL  +R A+  G+GIP+ ++L+W+AVILG  ++    +D  GAV +         +ASG V      V VFSF A+ TSF G    LS+
Sbjct:   52 CGAYLFIHYALLVAYIARSSDIVTNAVGIP-----LWVSATLFTSTLGGLCYFGSQRVI------GVVNGGLVVGILGSFGLLVTVGSSGLDFNSLL-TANWVAVPHSIPVIALAFVYQNVVPVVTTSLEGDLPKIRTAVVLGTGIPLVLFLIWNAVILGTSSS---LVDPSGAVQAISDPLLRLRSASGIVAPT---VEVFSFLAIATSFIGFVLGLSD 253          
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Match: A0A2K1JWA9_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JWA9_PHYPA)

HSP 1 Score: 102 bits (255), Expect = 7.600e-22
Identity = 84/220 (38.18%), Postives = 117/220 (53.18%), Query Frame = 1
Query:   13 CGMFVASNYLLLVAYISQGSNIVASVLGSEACGPFLCVSQPALTPLLFGVV-LGSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVEVGVLTATFDVAAAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLLWDAVILGQRTAPAISIDGGGAVGS---------AASGAVPALPLLVSVFSFAALVTSFWGATASLSE 642
            CG ++  +Y LLVAYI++ S+IV + +G       L VS    T  L G+   GS R+          N  LVV I  SF  L+ VG  G++   L  T +  A P  +PV   A V+QN+VPVV   L+GDL  +R A+  G+GIP+ ++L+W+AVILG  ++    +D  GAV +         +ASG V      V VFSF A+ TSF G    LS+
Sbjct:  194 CGAYLFIHYALLVAYIARSSDIVTNAVGIP-----LWVSATLFTSTLGGLCYFGSQRVI------GVVNGGLVVGILGSFGLLVTVGSSGLDFNSLL-TANWVAVPHSIPVIALAFVYQNVVPVVTTSLEGDLPKIRTAVVLGTGIPLVLFLIWNAVILGTSSS---LVDPSGAVQAISDPLLRLRSASGIVAPT---VEVFSFLAIATSFIGFVLGLSD 395          
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Match: A0A7S2V4P3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4P3_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.240e-21
Identity = 85/220 (38.64%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   19 MFVASNYLLLVAYISQGSNIVASVLGSEACGPFLCVSQPALTPLLFG--VVLGSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVEVGVLTATFDVAAAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLLWDAVILG---QRTAPAISIDGGGAVGSAASGAVPALPL--------------LVSVFSFAALVTSFWG 621
            ++V  +Y LLVAY++QG  I A+ +      P    + P      FG  + LGS +L        + NNA V  +  SF GLL V +PGV    L    D + A  M+PV   A VF NIVPV+  QL+G++  VR A+  GS IP+ M+L+W+AVILG   Q  A A       A G+AA+G     PL              L+SVFS  A+VTSF G
Sbjct:  221 VYVGLHYCLLVAYMAQGGGIAAAGIRDLTSLPLPSWAGPVGFATAFGGLLALGSEKLV------ESVNNAFVAVVLLSFVGLLTVAVPGVRAERLLDQ-DWSQAYEMIPVMFVALVFHNIVPVIATQLEGNVSKVRQAILVGSAIPLVMFLMWNAVILGSLDQSLAEA-------AAGAAAAGGETFDPLALLRNGASGPVVGNLISVFSVFAIVTSFIG 426          
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Match: W7TVH4_9STRA (Tyrosine-specific transport n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVH4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.580e-21
Identity = 81/209 (38.76%), Postives = 112/209 (53.59%), Query Frame = 1
Query:   34 NYLLLVAYISQGSNIVASVLGSEACGPFL------CVSQPA-LTPLLFGVVLGSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVEVGVLTATFDVAAAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLLWDAVILGQRTAPAISIDG--GGAVGSAA----SGAVPALPLLVSVFSFAALVTSFWG 621
            +Y LLVAYI+QG +I+   L  E  G  L       V  PA + P+LF  VLG A  F      ++AN+ALV  +  +F  L+A   P  + G L      A  P++ PV   A V+ NIVPV+  +L+GD   +R ++  GSGIP+ M+L W+AVILG   A  ++     GG +   A     GA   L  L+S+FS  A+VTSF G
Sbjct:  269 HYALLVAYIAQGGDILTGAL--EGAGAALGFGGGDAVVLPAQVAPVLFTAVLGGALAFGNKKWLDSANDALVGVVVVAFLALVAAAGPRADPGGLMRANWTAMLPSI-PVMFVALVYHNIVPVISYRLRGDADKIRTSIVVGSGIPLLMFLAWNAVILGNIDASILTATSASGGTIDPLAVLRAGGAGHTLGNLISLFSEVAIVTSFTG 474          
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Match: A0A1Y1HMD4_KLENI (Tryptophan or tyrosine transporter protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HMD4_KLENI)

HSP 1 Score: 98.6 bits (244), Expect = 2.310e-20
Identity = 78/222 (35.14%), Postives = 111/222 (50.00%), Query Frame = 1
Query:   16 GMFVASNYLLLVAYISQGSNIVASVLGSEACGPFLCVSQPALTPLLFGVVLGSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVE-VGVLTATFDVAAAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLLWDAVILGQRTAPAISIDGGGAVGSAASGAVPALPLL------------VSVFSFAALVTSFWGATASLSE 642
            G ++  +Y LLVAY+++  +I+ +  G       L VS  A T        G+   F+        N  L+ AI ASFA L+ +  P VE   +L A +   A PA +P+   + V+QN+VPV+  +L+GDL  +R A+ +G+ IP+ M+LLWDAVILG   A         AV  AA       PLL            V +FSF A+ TSF G    LS+
Sbjct:  179 GTYIFIHYALLVAYVARSGDIITNFTGLP-----LPVSAAAFT-----AAFGAITYFSSQKTLGYVNGFLIAAILASFATLVGIAAPEVEPASLLKANWS--AVPASIPIVALSFVYQNVVPVISSELEGDLPKIRTAIMYGTAIPLTMFLLWDAVILGSVPA---------AVPGAAQSMAAMDPLLRLRESSGAVGPAVEIFSFFAIGTSFIGFVLGLSD 379          
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Match: UPI001CB897CB (tyrosine-specific transport protein-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB897CB)

HSP 1 Score: 97.4 bits (241), Expect = 5.940e-20
Identity = 70/210 (33.33%), Postives = 109/210 (51.90%), Query Frame = 1
Query:   13 CGMFVASNYLLLVAYISQGSNIVASVLGSEACGPFLCVSQPALTPLLFGVVLGSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVEVGVLTATFDVAAAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLLWDAVILGQRTAPAISIDGGGAVGSAASGAVPALPLLVSVFSFAALVTSFWGATASLSE 642
            C  ++  +Y LLVAY+++ S+I+ ++LG      + C S       LF  +LGS   F       A N  LV +I  SFA L+AV    +    L    ++ A PA +P+   + V+QN+VPV+   L+GDL  +R ++  G+ IP+G++L+W+AVILG  T+P    D       A       +  +V  FS  A+ TS+ G    LS+
Sbjct:  188 CWSYIFIHYALLVAYVARSSDILTNILGIPV---WECAS-------LFSFLLGSLCYFGSQQVIGAVNGVLVSSIIISFAALVAVASGDLHWDALLKV-NLQAIPASIPIIALSFVYQNVVPVLCTNLEGDLSKIRTSIVLGTAIPLGLFLIWNAVILGTITSPKTGTDKIVDPLQALLATNGVVGPIVGAFSLLAIATSYIGFVLGLSD 386          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13459.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW44_ECTSI3.490e-4447.69Aromatic amino acid permease n=2 Tax=Ectocarpus Ta... [more]
A0A836CN59_9STRA1.400e-4248.64Tryptophan/tyrosine permease family-domain-contain... [more]
A0A7S0WN86_9CHLO7.670e-2536.79Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A6V1NZW3_HETAK1.410e-2436.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7I4ABU8_PHYPA2.300e-2238.18Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
A0A2K1JWA9_PHYPA7.600e-2238.18Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
A0A7S2V4P3_9STRA2.240e-2138.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TVH4_9STRA3.580e-2138.76Tyrosine-specific transport n=2 Tax=Monodopsidacea... [more]
A0A1Y1HMD4_KLENI2.310e-2035.14Tryptophan or tyrosine transporter protein n=1 Tax... [more]
UPI001CB897CB5.940e-2033.33tyrosine-specific transport protein-like n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13459contigP-wetherbeei_contig13459:406..1833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FW44
PFAMsTrp_Tyr_perm
Model size645
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue1.33e-43
EggNOG OGsCOG0814@1|root,2QSPD@2759|Eukaryota
DescriptionTryptophan/tyrosine permease family
Cds size627
COG categoryE
BiGG ReactioniEC55989_1330.EC55989_3581,iECO103_1326.ECO103_3910,iECO111_1330.ECO111_3985,iECO26_1355.ECO26_4267,iECSE_1348.ECSE_3447,iEcE24377_1341.EcE24377A_3643,iSSON_1240.SSON_3307
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.098561-CDS-P-wetherbeei_contig13459:405..4951683185986.098561-CDS-P-wetherbeei_contig13459:405..495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13459 406..495 -
1683185986.106914-CDS-P-wetherbeei_contig13459:792..9541683185986.106914-CDS-P-wetherbeei_contig13459:792..954Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13459 793..954 -
1683185986.1144757-CDS-P-wetherbeei_contig13459:1116..13901683185986.1144757-CDS-P-wetherbeei_contig13459:1116..1390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13459 1117..1390 -
1683185986.1217968-CDS-P-wetherbeei_contig13459:1714..18151683185986.1217968-CDS-P-wetherbeei_contig13459:1714..1815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13459 1715..1815 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.1291618-UTR-P-wetherbeei_contig13459:1815..18331683185986.1291618-UTR-P-wetherbeei_contig13459:1815..1833Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13459 1816..1833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13459.1.1prot_P-wetherbeei_contig13459.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13459 406..1815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13459.1.1

>prot_P-wetherbeei_contig13459.1.1 ID=prot_P-wetherbeei_contig13459.1.1|Name=mRNA_P-wetherbeei_contig13459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=209bp
MFVASNYLLLVAYISQGSNIVASVLGSEACGPFLCVSQPALTPLLFGVVL
GSARLFAPPAAANAANNALVVAIAASFAGLLAVGLPGVEVGVLTATFDVA
AAPAMLPVALTATVFQNIVPVVLKQLKGDLQAVRAALTWGSGIPIGMYLL
WDAVILGQRTAPAISIDGGGAVGSAASGAVPALPLLVSVFSFAALVTSFW
GATASLSEE
back to top

mRNA from alignment at P-wetherbeei_contig13459:406..1833-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13459.1.1 ID=mRNA_P-wetherbeei_contig13459.1.1|Name=mRNA_P-wetherbeei_contig13459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1428bp|location=Sequence derived from alignment at P-wetherbeei_contig13459:406..1833- (Phaeothamnion wetherbeei SAG_119_79)
GGAGCTGCCGTCTGTGGGATGTTTGTGGCCAGCAACTACCTGCTGCTCGT CGCTTACATCTCTCAGGGCTCCAACATCGTCGCGTCGGTGTTGGGGAGCG AGGCCTGTGGGCCATTTCTGTCGAGGCAAGTTTTGAGACTTTCGAAGCTG CCAGTTCTTTTTTTTGTTTTTACTTGCTCAATTGATAGCCTTAGCCTTCA GTGATTGGTCGCCAGTTACGATGTGTGGGCCTTTTCCGCCGAGGCAAGTT CGGGAGTTCCTTAAAGTCTGTGCCCGCCTTTCTTTCAAGCTTTTGGCTGC TCGACCTGGGCATTCCGCCTATAGCGTGTATCGCCACTGCGGTCACGTTG CTGGTTTAGGAAGTGTTTCGGTTTGTGGTTTGGTCAAAGGCACAAACTGT CATGTTAACCAGTGCAAGCTCTTCCGTTGTCCGATCCCTCCAGGTGCGTG TCGCAACCGGCGCTGACGCCGCTTCTCTTCGGCGTGGTGCTCGGCAGCGC CCGCCTGTTCGCGCCGCCGGCCGCCGCCAACGCCGCCAACAACGCCCTCG TGGTAGCCATCGCAGCATCCTTCGCAGGGCTGCTGGCAGTGGGGCTGCCC GGGGTGGAGGTCGGGGTGCTGACGGCCACGTTTGACGTGGCGGCAGCGCC GGCAATGCTGCCGGTGGCGCTCACGGCGACGGTATTTCAAAATATCGTCC CAGTGGTTCTAAAACAGGTGCGATCGGCAAAGAAAGACGCATCGAGGTGT ATGCATTCTGAAGGTTAGATAGATTCTATCTTGGTATGAGGCGGCTTTTG CCATGACGTTGATTGCTATTCCTTTCGCAATTACGAAAGCTTTATGCCGT TCTTTCCGTCAATTTCTCTCCTTCCGCAGCTTAAGGGAGATCTTCAGGCC GTCAGGGCAGCGCTAACATGGGGTTCCGGGATCCCCATCGGAATGTATTT ATTATGGGATGCCGTCATCCTCGGGCAGAGGACTGCCCCGGCCATTTCGA TCGACGGCGGCGGCGCCGTCGGTTCTGCAGCGTCGGGCGCCGTGGAGGCG GCGGCAGGCACTGCGGCAGTGATGGCGCCCGCCTATGGTGTTGCATCGTT GGAGGCGCTTGGCCAGGTACGGTTTTGCTTGATCTTTCCTTATTTTCTCG AAACTCTATCTAGTGCAAATCTAAATCTCTCCTTTTTTTCTGCTGACGGA ATCGTCCCGCCATTTTTGTCTCAGATACACGCTCTTCTGGGACAAGGAGG GTTTCTTGTACCTCGGAGCTTTCTTTCTGGCGTCCAAATCAAATCTCACA AGCTGAAGACTACGATTCTCATTTTCCGCACACAACAGGTGCCAGCGCTG CCTTTGCTGGTCAGCGTCTTCAGCTTTGCGGCGCTGGTCACCTCCTTCTG GGGCGCGACGGCAAGCCTTTCAGAGGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13459:406..1833-

>mRNA_P-wetherbeei_contig13459.1.1 ID=mRNA_P-wetherbeei_contig13459.1.1|Name=mRNA_P-wetherbeei_contig13459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=627bp|location=Sequence derived from alignment at P-wetherbeei_contig13459:406..1833- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGTGGCCAGCAACTACCTGCTGCTCGTCGCTTACATCTCTCAGGG
CTCCAACATCGTCGCGTCGGTGTTGGGGAGCGAGGCCTGTGGGCCATTTC
TGTGCGTGTCGCAACCGGCGCTGACGCCGCTTCTCTTCGGCGTGGTGCTC
GGCAGCGCCCGCCTGTTCGCGCCGCCGGCCGCCGCCAACGCCGCCAACAA
CGCCCTCGTGGTAGCCATCGCAGCATCCTTCGCAGGGCTGCTGGCAGTGG
GGCTGCCCGGGGTGGAGGTCGGGGTGCTGACGGCCACGTTTGACGTGGCG
GCAGCGCCGGCAATGCTGCCGGTGGCGCTCACGGCGACGGTATTTCAAAA
TATCGTCCCAGTGGTTCTAAAACAGCTTAAGGGAGATCTTCAGGCCGTCA
GGGCAGCGCTAACATGGGGTTCCGGGATCCCCATCGGAATGTATTTATTA
TGGGATGCCGTCATCCTCGGGCAGAGGACTGCCCCGGCCATTTCGATCGA
CGGCGGCGGCGCCGTCGGTTCTGCAGCGTCGGGCGCCGTGCCAGCGCTGC
CTTTGCTGGTCAGCGTCTTCAGCTTTGCGGCGCTGGTCACCTCCTTCTGG
GGCGCGACGGCAAGCCTTTCAGAGGAG
back to top