mRNA_P-wetherbeei_contig13456.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13456.2.1
Unique NamemRNA_P-wetherbeei_contig13456.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Match: A0A840STK6_9RHOB (Uncharacterized protein n=1 Tax=Amaricoccus macauensis TaxID=57001 RepID=A0A840STK6_9RHOB)

HSP 1 Score: 66.2 bits (160), Expect = 3.230e-11
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    1 SIKDIMVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVIFVR 174
            S K +  FL  +    RP I LLDNGN RA W D+   +QVGLQFLG + VQYVIF R
Sbjct:  122 SEKGLKAFLAAIPFTKRPYITLLDNGNVRAFWEDKAAGEQVGLQFLGGDQVQYVIFAR 179          
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Match: A0A7X4FF90_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4FF90_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.320e-10
Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 1
Query:    1 SIKDIMVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVIFVREGQTDKLKTIASTGSMRAMLPLIASASCSYLL 270
            S  D   F+  +  A +  +  LDNGN RA+W+DEN    +GLQFLGN  V+YVIF R   T  +  +A   ++  +   I +   + L+
Sbjct:   32 SEADFWSFIESISFAQKAGVVFLDNGNLRAVWKDENGSH-LGLQFLGNRLVEYVIFKRRQATKDILRVAGQDTIEGIKKKIRAFDLTALM 120          
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Match: A0A6L7N3G4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7N3G4_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 8.010e-10
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    1 SIKDIMVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVIFVREGQTDKLKTIASTGSMRAMLPLIASASCSYLLF 273
            S  D  +F+G      +  + L+DNGN RA+W+D+   + VGLQFLG E VQYVIF R   T  +  +A   ++  +  +I +     +L+
Sbjct:   52 SEADFWLFVGLENRLRKGNLVLMDNGNLRAVWKDDQGSR-VGLQFLGEEMVQYVIFKRREFTKPISRVAGRDTLTGLRAIIKAFELDSMLY 141          
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Match: A0A6L7LD39_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6L7LD39_9CHLR)

HSP 1 Score: 58.2 bits (139), Expect = 8.830e-9
Identity = 27/74 (36.49%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 SIKDIMVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVIFVREGQTDKLKTIASTGSM 222
            S +D   F+    L+ + A+FL+DNGN RA+W+   +   +GLQFLG +  +YVIF R+  ++ L  +A   ++
Sbjct:   35 SERDFWSFVHSAPLSEKAALFLMDNGNLRAVWKG-GDSSHIGLQFLGCQKAEYVIFKRQKGSEGLSRVAGVDTL 107          
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Match: UPI0018DFA7BC (hypothetical protein n=1 Tax=Sphingomonas sp. MA1305 TaxID=2479204 RepID=UPI0018DFA7BC)

HSP 1 Score: 59.7 bits (143), Expect = 9.190e-9
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 SIKDIMVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVIFVREGQTDKLKTI 204
            S   ++ FL  L+   RPAIF L NGN RA+W D+   +QVG+QFL + TVQYVI +R  +   L++I
Sbjct:  119 SSASLVQFLMDLRPTKRPAIFRLSNGNLRAVWEDKRADRQVGMQFLTDGTVQYVI-LRASKKGMLQSI 185          
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Match: UPI001C8DA222 (hypothetical protein n=1 Tax=Paracoccus yeei TaxID=147645 RepID=UPI001C8DA222)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-7
Identity = 29/90 (32.22%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    1 SIKDIMVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVIFVREGQTDKLKTIASTGSMRAMLPLIASASCSYLL 270
            S +D   F+  +    + ++ L+DNGN RA+W+D+   Q +GLQ+LG  +VQ+VIF    +   +  +A   S+  +   I + S   LL
Sbjct:  126 SKRDFWTFIRSMPFIRKGSLILMDNGNLRAVWKDDQGNQ-IGLQYLGTGSVQFVIFKHPDRAGGVSRVAGCTSLADIKRQIRAFSLERLL 214          
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Match: UPI001489D26A (hypothetical protein n=1 Tax=Ruegeria sp. HKCCD8929 TaxID=2683006 RepID=UPI001489D26A)

HSP 1 Score: 56.2 bits (134), Expect = 1.710e-7
Identity = 28/73 (38.36%), Postives = 40/73 (54.79%), Query Frame = 1
Query:    1 SIKDIMVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVIFVREGQTDKLKTIASTGS 219
            S  D   F+       +  + L+DNGN RA+WRD++ +  +GLQF+G   VQYVIF R     K+  +A   S
Sbjct:  113 SKHDFWRFICSEPFIRKGNLILMDNGNLRAMWRDQH-RNHIGLQFIGGRMVQYVIFKRREAVAKISRVAGRDS 184          
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Match: A0A6B1CLZ3_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1CLZ3_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.640e-7
Identity = 24/74 (32.43%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 SIKDIMVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVIFVREGQTDKLKTIASTGSM 222
            S +D   ++  +  A +  + L+DNG+ RA+W+ ++ +  +G+QFLGN+ V+YVIF R   T  +  +A   ++
Sbjct:   37 SERDFWHYIRSVPFAQKAGLVLVDNGDLRAVWKGDD-ESHLGIQFLGNQWVEYVIFKRRPSTSDVARVAGRDTL 109          
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Match: A0A7X3XX31_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3XX31_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 3.360e-7
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    1 SIKDIMVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVIFVREGQTDKLKTIASTGSMRAM 231
            S +D   F+       +  + LLDNGN RA+W+DE   + +G+QFLG++ VQYVIF R  +   +  +A   S+  +
Sbjct:  114 SERDFKQFVRSRPSIRKGDLVLLDNGNLRAVWKDEQGGR-LGVQFLGSDVVQYVIFSRRQRNRPVSRVAGRDSLEGV 189          
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Match: A0A6B0YQW7_9CHLR (Uncharacterized protein n=2 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A6B0YQW7_9CHLR)

HSP 1 Score: 55.1 bits (131), Expect = 4.570e-7
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    1 SIKDIMVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVIFVREGQTDKLKTIASTGS 219
            S+ D   F+G   ++ +  + L++NGN RA+W+ E  +  +GL FLG + VQYVIF R   + ++   A   S
Sbjct:  112 SVDDFWSFIGSSNVSRQAGLALMENGNIRAVWKGEE-ESHLGLHFLGEQQVQYVIFKRRPGSRRISRTAGRDS 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13456.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A840STK6_9RHOB3.230e-1155.17Uncharacterized protein n=1 Tax=Amaricoccus macaue... [more]
A0A7X4FF90_9BACT1.320e-1035.56Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6L7N3G4_9GAMM8.010e-1035.16Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6L7LD39_9CHLR8.830e-936.49Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
UPI0018DFA7BC9.190e-947.06hypothetical protein n=1 Tax=Sphingomonas sp. MA13... [more]
UPI001C8DA2221.010e-732.22hypothetical protein n=1 Tax=Paracoccus yeei TaxID... [more]
UPI001489D26A1.710e-738.36hypothetical protein n=1 Tax=Ruegeria sp. HKCCD892... [more]
A0A6B1CLZ3_9BACT2.640e-732.43Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]
A0A7X3XX31_9BACT3.360e-736.36Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6B0YQW7_9CHLR4.570e-735.62Uncharacterized protein n=2 Tax=unclassified Caldi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13456contigP-wetherbeei_contig13456:1560..1838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size279
Hectar predicted targeting categoryother localisation
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.0690262-CDS-P-wetherbeei_contig13456:1559..18231683185986.0690262-CDS-P-wetherbeei_contig13456:1559..1823Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13456 1560..1823 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.0764053-UTR-P-wetherbeei_contig13456:1823..18381683185986.0764053-UTR-P-wetherbeei_contig13456:1823..1838Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13456 1824..1838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13456.2.1prot_P-wetherbeei_contig13456.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13456 1560..1823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13456.2.1

>prot_P-wetherbeei_contig13456.2.1 ID=prot_P-wetherbeei_contig13456.2.1|Name=mRNA_P-wetherbeei_contig13456.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MVFLGGLKLAHRPAIFLLDNGNFRALWRDENNKQQVGLQFLGNETVQYVI
FVREGQTDKLKTIASTGSMRAMLPLIASASCSYLLFG*
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mRNA from alignment at P-wetherbeei_contig13456:1560..1838-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13456.2.1 ID=mRNA_P-wetherbeei_contig13456.2.1|Name=mRNA_P-wetherbeei_contig13456.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig13456:1560..1838- (Phaeothamnion wetherbeei SAG_119_79)
TCCATCAAAGACATTATGGTATTTTTGGGTGGTTTGAAGCTCGCGCACCG GCCTGCCATTTTCTTACTCGATAACGGTAACTTCCGGGCTCTATGGCGAG ACGAGAACAACAAGCAGCAAGTTGGCTTGCAGTTTCTCGGCAACGAAACA GTTCAGTACGTCATCTTTGTTCGTGAGGGGCAGACCGACAAACTGAAAAC GATTGCTTCAACAGGCTCCATGAGGGCGATGCTTCCGTTGATTGCGTCGG CCTCTTGCTCTTATCTGCTGTTTGGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13456:1560..1838-

>mRNA_P-wetherbeei_contig13456.2.1 ID=mRNA_P-wetherbeei_contig13456.2.1|Name=mRNA_P-wetherbeei_contig13456.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig13456:1560..1838- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTATTTTTGGGTGGTTTGAAGCTCGCGCACCGGCCTGCCATTTTCTT
ACTCGATAACGGTAACTTCCGGGCTCTATGGCGAGACGAGAACAACAAGC
AGCAAGTTGGCTTGCAGTTTCTCGGCAACGAAACAGTTCAGTACGTCATC
TTTGTTCGTGAGGGGCAGACCGACAAACTGAAAACGATTGCTTCAACAGG
CTCCATGAGGGCGATGCTTCCGTTGATTGCGTCGGCCTCTTGCTCTTATC
TGCTGTTTGGGTAA
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