mRNA_P-wetherbeei_contig1340.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1340.6.1
Unique NamemRNA_P-wetherbeei_contig1340.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Match: A0A835Z3G1_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.080e-13
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 PAGFVFHMARCGSTVVANMLAASPENLVYAESAPVPAILKACDKNGCDDATRAALLRDVMLLMGRRS 201
            PAGFV+HM RCGST+VANMLA+SP+++VY+E      ++  C +  C     A+ L+DV+ LMGR S
Sbjct:  147 PAGFVYHMGRCGSTLVANMLASSPKHIVYSEPHATSDVMMGCRRVNCTPQELASTLKDVITLMGRTS 213          
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Match: A0A7S2K3H4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3H4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.510e-13
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 PAGFVFHMARCGSTVVANMLAA-SPENL-VYAESAPVPAILKACDKNGCDDATRAALLRDVMLLMGRRS 201
            P GFVFH +RCGST+VAN LAA +PE   VY+ES P    +KACD   CD+     L+RDV+ LMGR S
Sbjct:  285 PNGFVFHESRCGSTLVANSLAAFAPEKTRVYSESGPPVLAMKACDFQSCDEGKHIELIRDVIYLMGRSS 353          
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Match: A0A7S2PC56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PC56_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.580e-13
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 PAGFVFHMARCGSTVVANMLAA-SPE-NLVYAESAPVPAILKACDKNGCDDATRAALLRDVMLLMGR 195
            P GFVFH +RCGST+VAN+LAA +PE + VY ES P  ++L AC  + C+   +AAL RDV+ LMGR
Sbjct:   31 PTGFVFHESRCGSTLVANILAAFAPERSRVYTESPPPASVLTACRTSRCNPKKQAALFRDVLYLMGR 97          
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Match: A0A448Z5L2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5L2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.060e-12
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 PAGFVFHMARCGSTVVANMLAASPENL----VYAESAPVPAILKACDKNG---CDDATRAALLRDVMLLMGRRSPA 207
            P+G VFH  RCGST+VAN+LA S   +    VY+ES P  A L+AC +NG   CD    ++L+RDV  +MGRR PA
Sbjct:  238 PSGVVFHETRCGSTLVANLLAGSSPTMGTSRVYSESPPPIAALQACARNGGNACDPDLHSSLIRDVFYVMGRRRPA 313          
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Match: A0A7S3ZKE9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKE9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.260e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 PAGFVFHMARCGSTVVANMLAASPENLVYAESAPVPAILKACDKNGCDDATRAALLRDVMLLMG 192
            P+GFVFH +R GST+VANMLAA P N+VY+ESAP PA+L  C    C    +  +L+ ++ LMG
Sbjct:  178 PSGFVFHESRVGSTLVANMLAAVPTNIVYSESAPPPAVLNHC--RSCSKQRKTDILQKLIALMG 239          
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Match: A0A7S4EIA1_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EIA1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.280e-11
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 PAGFVFHMARCGSTVVANMLAASP---ENLVYAESAPVPAILKACDKNG---CDDATRAALLRDVMLLMGRR 198
            P G VFH  RCGST+VAN+LA S     + VY+ES P  A LKAC  +G   CD     AL+RDV  +MGRR
Sbjct:  219 PTGVVFHETRCGSTLVANLLAGSATEGRSRVYSESPPPIAALKACSNDGDKSCDPDLHKALIRDVFYMMGRR 290          
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Match: A0A4D9CT70_9STRA (JmjC domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT70_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.200e-11
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 PAGFVFHMARCGSTVVANMLAASPENLVYAESAPVPAILKACDKNGCDDATRAALLRDVMLLMGR 195
            P GF+FH +R GST+VANMLA+ P NLVY+E +    ++  C   GC + T   LLR  +L MGR
Sbjct:  213 PTGFIFHESRVGSTLVANMLASVPTNLVYSEPSVPAHVIHLCKSAGCSEETTVRLLRMAILAMGR 277          
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Match: A0A7S2PP86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PP86_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.290e-11
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 PAGFVFHMARCGSTVVANMLAA-SPE-NLVYAESAPVPAILKACDKNGCDDATRAALLRDVMLLMGR 195
            P GFVFH +RCGST+VAN LAA +PE + VY ES P  ++L AC    C+   +A L  DV+ LMGR
Sbjct:  189 PTGFVFHESRCGSTLVANSLAAFAPERSRVYTESTPPSSVLVACPSGQCNKGKQADLFSDVLYLMGR 255          
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Match: A0A831YG16_9PROT (Aspartyl beta-hydroxylase n=1 Tax=Caulobacterales bacterium TaxID=2282150 RepID=A0A831YG16_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 1.090e-10
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 PAGFVFHMARCGSTVVANMLAASPENLVYAESAPVPAILKACDKNGCDDATRAALLRDVMLLMGR 195
            PAG +FHM+RCGST+ A MLAASP N+V +E+AP+ A+ +  D    DD  +A LLR ++  +G+
Sbjct:  149 PAGLIFHMSRCGSTLAAQMLAASPANVVLSEAAPINAVTRRTD---LDDDAKACLLRAMVAALGQ 210          
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Match: A9USN8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9USN8_MONBE)

HSP 1 Score: 64.7 bits (156), Expect = 1.580e-10
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    1 PAGFVFHMARCGSTVVANMLAASPENLVYAESAPVPAILKACDKNGCDDATRAALLRDVMLLMG 192
            P GFVFH +R GST+V+NMLAA P NLVYAESAP   I   CD   C  A +  LLR  +  MG
Sbjct:  130 PTGFVFHQSRVGSTLVSNMLAADPANLVYAESAPPATIALHCD--ACTRARQIELLRLTVTAMG 191          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1340.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3G1_9STRA3.080e-1350.75JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2K3H4_9STRA4.510e-1356.52Hypothetical protein (Fragment) n=2 Tax=Leptocylin... [more]
A0A7S2PC56_9STRA4.580e-1356.72Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A448Z5L2_9STRA1.060e-1251.32Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3ZKE9_9STRA1.260e-1153.13Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S4EIA1_9STRA3.280e-1152.78Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A4D9CT70_9STRA6.200e-1149.23JmjC domain-containing protein n=3 Tax=Monodopsida... [more]
A0A7S2PP86_9STRA7.290e-1153.73Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A831YG16_9PROT1.090e-1049.23Aspartyl beta-hydroxylase n=1 Tax=Caulobacterales ... [more]
A9USN8_MONBE1.580e-1056.25Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1340contigP-wetherbeei_contig1340:7071..7277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FL26
PFAMsCupin_8
Model size207
Max annot lvl2759|Eukaryota
KEGG koko:K10277
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.75e-11
EggNOG OGsKOG2132@1|root,KOG2132@2759|Eukaryota
EC1.14.11.27
DescriptiontRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
Cds size186
COG categoryIQ
BRITEko00000,ko01000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185983.8992097-UTR-P-wetherbeei_contig1340:7070..70911683185983.8992097-UTR-P-wetherbeei_contig1340:7070..7091Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1340 7071..7091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185983.9077473-CDS-P-wetherbeei_contig1340:7091..72771683185983.9077473-CDS-P-wetherbeei_contig1340:7091..7277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1340 7092..7277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1340.6.1prot_P-wetherbeei_contig1340.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1340 7092..7277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1340.6.1

>prot_P-wetherbeei_contig1340.6.1 ID=prot_P-wetherbeei_contig1340.6.1|Name=mRNA_P-wetherbeei_contig1340.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
MARCGSTVVANMLAASPENLVYAESAPVPAILKACDKNGCDDATRAALLR
DVMLLMGRRSPA
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mRNA from alignment at P-wetherbeei_contig1340:7071..7277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1340.6.1 ID=mRNA_P-wetherbeei_contig1340.6.1|Name=mRNA_P-wetherbeei_contig1340.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig1340:7071..7277+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGGGCTTCGTGTTCCACATGGCCCGCTGTGGATCGACGGTCGTCGC AAACATGTTGGCGGCATCGCCGGAAAACCTCGTCTACGCCGAGTCGGCGC CCGTGCCGGCGATCTTAAAGGCGTGCGACAAGAACGGCTGCGACGACGCC ACGCGCGCCGCGCTCCTGCGCGACGTCATGCTCTTGATGGGCCGCCGCTC CCCTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1340:7071..7277+

>mRNA_P-wetherbeei_contig1340.6.1 ID=mRNA_P-wetherbeei_contig1340.6.1|Name=mRNA_P-wetherbeei_contig1340.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig1340:7071..7277+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCGCTGTGGATCGACGGTCGTCGCAAACATGTTGGCGGCATCGCC
GGAAAACCTCGTCTACGCCGAGTCGGCGCCCGTGCCGGCGATCTTAAAGG
CGTGCGACAAGAACGGCTGCGACGACGCCACGCGCGCCGCGCTCCTGCGC
GACGTCATGCTCTTGATGGGCCGCCGCTCCCCTGCC
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