mRNA_P-wetherbeei_contig13350.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13350.1.1
Unique NamemRNA_P-wetherbeei_contig13350.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13350.1.1 vs. uniprot
Match: A0A6H5JYY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY0_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.610e-27
Identity = 80/212 (37.74%), Postives = 120/212 (56.60%), Query Frame = 1 
Query: 1162 YLGPRLSDRRVAELQLKEAVAAHSAARAAEEAARHRVGGAGRNVAWWDAALQYVEGDAGDANDMVKRASATVRYEN--EKGAQERRKFPPFSTVAGLRAALTTQLQDVEAKRRRVREMVEELDGDPSGVEARENSLCGKCRADWGQTGPVCRHCRREALLTAFETAVMPYRRPGRDAADVEDGDSGAAL--GFGAGSE----QGAGANRAFQ 1773
            Y+   +   R + LQL+E+    ++A A   AA+ R+GG    V WW+ AL Y+E    D  D V+RA   + +E   +     RR FP F+++ GLR AL+ ++++ + KR+ V   +E L  DP  +E   NS C +CRADWG+TGP+C HC+ E  + A+E  V+ +RRP ++ A+V    +G+ L  GFG G E     G G N A Q
Sbjct: 1548 YVATAVGVHRSSRLQLQES--GRASAEALRAAAKKRIGG----VEWWEVALGYMESTR-DEGDFVQRAQLELLHEKAGQHAVMVRRSFPNFTSIGGLRTALSIKIKEAQTKRKEVLRKLESLTTDPGPMEVHSNSNCRRCRADWGKTGPICGHCKVEEHIDAWEACVVYFRRPLKNTANVGGSAAGSHLLSGFGRGGEGISNAGPGVNNAHQ 1752
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BLAST of mRNA_P-wetherbeei_contig13350.1.1 vs. uniprot
Match: D7FHS8_ECTSI (SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 4.910e-25
Identity = 76/212 (35.85%), Postives = 117/212 (55.19%), Query Frame = 1 
Query: 1162 YLGPRLSDRRVAELQLKEAVAAHSAARAAEEAARHRVGGAGRNVAWWDAALQYVEGDAGDANDMVKRASATVRYEN--EKGAQERRKFPPFSTVAGLRAALTTQLQDVEAKRRRVREMVEELDGDPSGVEARENSLCGKCRADWGQTGPVCRHCRREALLTAFETAVMPYRRPGRDAADVEDGDSGAAL--GFGAGSE----QGAGANRAFQ 1773
            Y+   +   R + LQL+E+    ++A A   AA+ R+GG    V WW+ AL Y+E    + N  V+RA   + +E   +     RR FP F+++ GLR AL+ ++++ + KR+ V   ++ L  DP  +E   NS C +CRADWG+TGP+C HC+ E  + A+E  V+ +RRP ++ AD     +G+     FG G E     G G N A Q
Sbjct: 1647 YVATAVGIHRSSRLQLQES--GRASAEALRAAAKKRIGG----VEWWEVALGYMESTRDEGN-FVQRAQLELLHEKAGQHAVMVRRSFPNFTSIGGLRTALSIKIKEAQTKRKDVLRKLDSLTTDPGPMEVHSNSNCRRCRADWGKTGPICGHCKVEEHIDAWEACVVYFRRPLKNTADAGGSAAGSPFLSRFGPGGEGTNNAGPGVNNAHQ 1851
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BLAST of mRNA_P-wetherbeei_contig13350.1.1 vs. uniprot
Match: A0A8J5XG88_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XG88_DIALT)

HSP 1 Score: 67.8 bits (164), Expect = 5.510e-8
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 1 
Query: 1426 FSTVAGLRAALTTQLQDVEAKRRRVREMVEELDGDPSGVEARENSLCGKCRADWGQTGPVCRHCRREALLTAFETAVMPYRRPGR 1680
             +++AG+R  L     +  + R    + +  L  +P   E  EN  CG+CR DWG++GPVC HCR E +L A+E  ++ +RR  R
Sbjct: 1633 LASLAGMRRMLARAAAERASARAATLDGLCALSAEPPVSEVSENRECGRCRVDWGRSGPVCAHCRLEDVLEAYEGTLLTFRRARR 1717
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BLAST of mRNA_P-wetherbeei_contig13350.1.1 vs. uniprot
Match: A0A7S2JSV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSV9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.240e-6
Identity = 34/85 (40.00%), Postives = 43/85 (50.59%), Query Frame = 1 
Query: 1417 FPPFSTVAGLRAALTTQLQDVEAK--------RRRVREMVEELDGDPSGVEARENSLCGKCRADWGQTGPVCRHCRREALLTAFE 1647
            FP F +V GL A L  + +D E +             + +  L   P+  E  ENS C KCRADW QTGP CRHC+ E  L  +E
Sbjct:   19 FPAFVSVNGLAAGLDMR-RDGEGEAASSSNKTNNACLDRICALQSTPTDGEILENSHCHKCRADWFQTGPKCRHCKLEESLLEYE 102
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BLAST of mRNA_P-wetherbeei_contig13350.1.1 vs. uniprot
Match: A0A7S2PY25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PY25_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.200e-5
Identity = 32/88 (36.36%), Postives = 46/88 (52.27%), Query Frame = 1 
Query: 1408 RRKFPPFSTVAGLRAALTTQLQDVEAK--------RRRVREMVEELDGDPSGVEARENSLCGKCRADWGQTGPVCRHCRREALLTAFE 1647
            R +FP F+ + GL AAL  ++Q    +        ++R    V +L  D +  E  +NS C +CR+DW Q GPVC+HC  E  L   E
Sbjct:   32 RGRFPGFNDINGLNAALQMRIQQGNDEVGSINNDDQKRCLHTVMKLSSDVTAGEVWDNSHCQRCRSDWQQQGPVCKHCHLEDDLVKLE 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13350.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JYY0_9PHAE1.610e-2737.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHS8_ECTSI4.910e-2535.85SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A8J5XG88_DIALT5.510e-836.47Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S2JSV9_9STRA4.240e-640.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2PY25_9STRA2.200e-536.36Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13350contigP-wetherbeei_contig13350:77..1854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHS8
PFAMsHelicase_C,SNF2_N
Model size1780
Max annot lvl2759|Eukaryota
KEGG koko:K15710
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.06e-26
EggNOG OGsCOG0553@1|root,KOG0298@2759|Eukaryota
EC2.3.2.27
DescriptionATP binding
Cds size1776
COG categoryKL
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185982.3224084-CDS-P-wetherbeei_contig13350:76..18521683185982.3224084-CDS-P-wetherbeei_contig13350:76..1852Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13350 77..1852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13350.1.1prot_P-wetherbeei_contig13350.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13350 77..1852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13350.1.1

>prot_P-wetherbeei_contig13350.1.1 ID=prot_P-wetherbeei_contig13350.1.1|Name=mRNA_P-wetherbeei_contig13350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=592bp
NAPWACFDFAKPKRLLQLRMRFVRVGRGVGRGELEPDDGSDWNRESGSGG
DGSAGGGSSAAKGGDDDDVTEEDASALNISRDNAAMPASAADLNGTGSGG
PGGGRAAEVICWPRECILEASDAMDGTLNAVRRFSLPSLAALMPSAATTV
AVDSTAAAVALETPLTSKWHTVEDFQGSNRTRSWRLKVLRAEIVATASDS
GSAGPTGGAAAVVAGAAAVAAGAAPGGRPRRLMCEVELFESEIEADSLQT
LHISRNMVSLLRERERLECEQRPDADVGGGGSGSDSGSAGGGGSSASPRK
PSKRSRGAVGPAAAAAAAAVLPAATSPPSSPTTPQPAAAPAGGAGPLSPP
GSPRAKAPASWSMTARGASIAAKCAALEAVSIDIRRHYLGPRLSDRRVAE
LQLKEAVAAHSAARAAEEAARHRVGGAGRNVAWWDAALQYVEGDAGDAND
MVKRASATVRYENEKGAQERRKFPPFSTVAGLRAALTTQLQDVEAKRRRV
REMVEELDGDPSGVEARENSLCGKCRADWGQTGPVCRHCRREALLTAFET
AVMPYRRPGRDAADVEDGDSGAALGFGAGSEQGAGANRAFQT
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mRNA from alignment at P-wetherbeei_contig13350:77..1854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13350.1.1 ID=mRNA_P-wetherbeei_contig13350.1.1|Name=mRNA_P-wetherbeei_contig13350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1778bp|location=Sequence derived from alignment at P-wetherbeei_contig13350:77..1854+ (Phaeothamnion wetherbeei SAG_119_79)
AACGCGCCGTGGGCGTGTTTCGACTTCGCCAAGCCCAAGCGCCTTCTGCA
GCTTCGCATGCGCTTTGTGCGGGTAGGGCGCGGGGTAGGGCGCGGGGAGC
TGGAGCCGGACGACGGCAGCGACTGGAACCGCGAAAGCGGGAGCGGCGGT
GACGGTAGTGCCGGAGGTGGCAGCAGCGCTGCCAAAGGCGGCGACGACGA
CGACGTTACCGAGGAGGATGCCAGCGCACTCAACATCAGCAGGGACAATG
CAGCAATGCCGGCGTCCGCGGCTGACCTCAATGGGACAGGCAGCGGCGGG
CCGGGCGGCGGCAGAGCTGCCGAGGTCATATGCTGGCCGCGGGAGTGCAT
TTTGGAGGCAAGCGATGCAATGGACGGCACTTTGAACGCCGTCCGGCGGT
TTTCGCTGCCTTCTTTAGCCGCCCTGATGCCCTCTGCGGCTACGACCGTC
GCCGTCGACTCGACGGCGGCGGCCGTGGCGCTCGAAACGCCACTGACGAG
CAAGTGGCACACGGTCGAAGATTTCCAGGGGAGCAATAGGACGCGCTCGT
GGAGGCTCAAGGTCCTAAGGGCGGAAATCGTGGCCACGGCTTCGGATTCG
GGCTCGGCGGGCCCCACCGGCGGAGCGGCGGCGGTAGTGGCAGGAGCGGC
GGCGGTGGCCGCAGGGGCAGCGCCTGGCGGCCGGCCCCGCCGCTTAATGT
GCGAGGTGGAGCTATTCGAGTCCGAGATCGAGGCCGACTCGCTTCAGACG
CTGCACATTTCTCGAAACATGGTGTCGCTCTTGAGGGAGCGCGAGCGGCT
GGAGTGCGAGCAGCGGCCCGACGCCGATGTCGGAGGGGGCGGCAGCGGAA
GCGATTCTGGCAGTGCGGGCGGAGGCGGCAGTTCGGCCAGCCCGCGCAAA
CCCAGCAAGCGGTCACGAGGCGCGGTGGGGCCCGCGGCGGCGGCAGCAGC
GGCAGCAGTACTACCGGCGGCAACCTCGCCGCCATCATCGCCGACGACGC
CGCAGCCGGCGGCGGCACCTGCTGGGGGAGCAGGGCCGCTGTCCCCGCCG
GGGTCGCCGCGGGCTAAGGCACCGGCGTCATGGAGCATGACGGCGCGCGG
GGCGTCAATCGCGGCCAAGTGCGCAGCCCTCGAGGCCGTCTCGATCGACA
TTCGGCGGCACTACCTGGGCCCGCGACTGTCTGACCGGCGCGTCGCGGAG
CTGCAGCTCAAGGAGGCCGTTGCCGCCCACAGCGCCGCGCGGGCCGCGGA
GGAAGCGGCCCGCCACAGGGTCGGCGGTGCCGGCCGCAATGTCGCCTGGT
GGGACGCGGCTCTGCAGTACGTCGAAGGGGATGCCGGCGACGCGAACGAC
ATGGTGAAGCGGGCGTCGGCAACGGTGCGGTACGAGAACGAGAAGGGCGC
GCAGGAGCGGCGCAAGTTCCCGCCGTTCTCGACGGTGGCGGGGCTCCGCG
CGGCGCTGACAACACAGCTGCAGGACGTGGAGGCCAAGCGGCGCCGCGTG
CGGGAGATGGTGGAGGAGCTGGACGGGGACCCGTCGGGAGTGGAGGCGCG
GGAGAACAGCCTGTGCGGCAAGTGCCGCGCGGACTGGGGCCAAACAGGGC
CTGTCTGCCGCCACTGCCGCCGGGAGGCCCTCCTGACGGCGTTCGAGACC
GCTGTCATGCCGTACCGGCGTCCCGGCCGGGACGCGGCGGACGTGGAGGA
CGGCGATTCGGGCGCGGCGCTCGGCTTCGGGGCCGGATCCGAGCAAGGTG
CCGGGGCCAACCGGGCGTTCCAGACCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13350:77..1854+

>mRNA_P-wetherbeei_contig13350.1.1 ID=mRNA_P-wetherbeei_contig13350.1.1|Name=mRNA_P-wetherbeei_contig13350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1776bp|location=Sequence derived from alignment at P-wetherbeei_contig13350:77..1854+ (Phaeothamnion wetherbeei SAG_119_79)
AACGCGCCGTGGGCGTGTTTCGACTTCGCCAAGCCCAAGCGCCTTCTGCA
GCTTCGCATGCGCTTTGTGCGGGTAGGGCGCGGGGTAGGGCGCGGGGAGC
TGGAGCCGGACGACGGCAGCGACTGGAACCGCGAAAGCGGGAGCGGCGGT
GACGGTAGTGCCGGAGGTGGCAGCAGCGCTGCCAAAGGCGGCGACGACGA
CGACGTTACCGAGGAGGATGCCAGCGCACTCAACATCAGCAGGGACAATG
CAGCAATGCCGGCGTCCGCGGCTGACCTCAATGGGACAGGCAGCGGCGGG
CCGGGCGGCGGCAGAGCTGCCGAGGTCATATGCTGGCCGCGGGAGTGCAT
TTTGGAGGCAAGCGATGCAATGGACGGCACTTTGAACGCCGTCCGGCGGT
TTTCGCTGCCTTCTTTAGCCGCCCTGATGCCCTCTGCGGCTACGACCGTC
GCCGTCGACTCGACGGCGGCGGCCGTGGCGCTCGAAACGCCACTGACGAG
CAAGTGGCACACGGTCGAAGATTTCCAGGGGAGCAATAGGACGCGCTCGT
GGAGGCTCAAGGTCCTAAGGGCGGAAATCGTGGCCACGGCTTCGGATTCG
GGCTCGGCGGGCCCCACCGGCGGAGCGGCGGCGGTAGTGGCAGGAGCGGC
GGCGGTGGCCGCAGGGGCAGCGCCTGGCGGCCGGCCCCGCCGCTTAATGT
GCGAGGTGGAGCTATTCGAGTCCGAGATCGAGGCCGACTCGCTTCAGACG
CTGCACATTTCTCGAAACATGGTGTCGCTCTTGAGGGAGCGCGAGCGGCT
GGAGTGCGAGCAGCGGCCCGACGCCGATGTCGGAGGGGGCGGCAGCGGAA
GCGATTCTGGCAGTGCGGGCGGAGGCGGCAGTTCGGCCAGCCCGCGCAAA
CCCAGCAAGCGGTCACGAGGCGCGGTGGGGCCCGCGGCGGCGGCAGCAGC
GGCAGCAGTACTACCGGCGGCAACCTCGCCGCCATCATCGCCGACGACGC
CGCAGCCGGCGGCGGCACCTGCTGGGGGAGCAGGGCCGCTGTCCCCGCCG
GGGTCGCCGCGGGCTAAGGCACCGGCGTCATGGAGCATGACGGCGCGCGG
GGCGTCAATCGCGGCCAAGTGCGCAGCCCTCGAGGCCGTCTCGATCGACA
TTCGGCGGCACTACCTGGGCCCGCGACTGTCTGACCGGCGCGTCGCGGAG
CTGCAGCTCAAGGAGGCCGTTGCCGCCCACAGCGCCGCGCGGGCCGCGGA
GGAAGCGGCCCGCCACAGGGTCGGCGGTGCCGGCCGCAATGTCGCCTGGT
GGGACGCGGCTCTGCAGTACGTCGAAGGGGATGCCGGCGACGCGAACGAC
ATGGTGAAGCGGGCGTCGGCAACGGTGCGGTACGAGAACGAGAAGGGCGC
GCAGGAGCGGCGCAAGTTCCCGCCGTTCTCGACGGTGGCGGGGCTCCGCG
CGGCGCTGACAACACAGCTGCAGGACGTGGAGGCCAAGCGGCGCCGCGTG
CGGGAGATGGTGGAGGAGCTGGACGGGGACCCGTCGGGAGTGGAGGCGCG
GGAGAACAGCCTGTGCGGCAAGTGCCGCGCGGACTGGGGCCAAACAGGGC
CTGTCTGCCGCCACTGCCGCCGGGAGGCCCTCCTGACGGCGTTCGAGACC
GCTGTCATGCCGTACCGGCGTCCCGGCCGGGACGCGGCGGACGTGGAGGA
CGGCGATTCGGGCGCGGCGCTCGGCTTCGGGGCCGGATCCGAGCAAGGTG
CCGGGGCCAACCGGGCGTTCCAGACC
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