mRNA_P-wetherbeei_contig13323.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13323.2.1
Unique NamemRNA_P-wetherbeei_contig13323.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Match: A0A836C9F9_9STRA (Magnesium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F9_9STRA)

HSP 1 Score: 117 bits (292), Expect = 6.550e-28
Identity = 65/119 (54.62%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   61 PFELVVLEHFLQEVCTAYQRRVHIFSR-VATTVLSEVTQQTTLGS-RADFYKLVPIRAALKEFELSTLALRGCLADLLGSDEDLLALLLTERRRLRAGEHMDPRRHEAAELLLENYHRQ 411
            PFEL +LE  LQE C + QRR+ +    VA T+    T  TTLG+ R DFYK+VPI  ALK FELST   R CL DLL +D+D+L L+LT +  L  GE +D  RH+  ELLLENYHRQ
Sbjct:  186 PFELAMLEAMLQEYCNSQQRRLRLMRHLVADTLTRATTSSTTLGNARIDFYKMVPINVALKNFELSTAEARRCLTDLLHNDDDMLDLMLTAKHELGPGEMLDETRHQEVELLLENYHRQ 304          
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Match: A0A6S8XKU5_9STRA (Magnesium transporter n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XKU5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.140e-20
Identity = 55/125 (44.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query:   55 ETPFELVVLEHFLQEVCTAYQRRVHIFSRVATTVLSEVTQQTTLGSRADFYKLVPIRAALKEFELSTLALRGCLADLLGSDEDLLALLLTERRRLR-AGEHMDPRRHEAAELLLENYHRQARLLL 426
            E  FEL+ LE  L++V T Y RR+ ++  +  TV+++V+ + +  S    ++LVP++ +L EFE+   +   CL  LLG++ED+L LLLTER+  R  GE MD RRHE  ELLLE Y RQ   +L
Sbjct:  272 EGAFELIFLEEILKDVVTTYNRRLILYEPIVDTVVTKVSNEMSAASGV--HRLVPVKDSLLEFEIQVESALNCLTHLLGNEEDMLGLLLTERQAARDRGEEMDIRRHEDVELLLEEYARQLSYIL 394          
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Match: A0A7S4HRH7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HRH7_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.090e-19
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   61 PFELVVLEHFLQEVCTAYQRRVHIFSRVATTVLSEVTQQTTLGSRADFYKLVPIRAALKEFELSTLALRGCLADLLGSDEDLLALLLTERRRLRA-GEHMDPRRHEAAELLLENYHRQ 411
            PFELV +E  L++ C  + RR+ ++  +  T +S  T +  + S A   KLVPI+ +L++FEL+      CL  LLG+DED+L LLLTE+ +  + GEH+    HEA ELL E Y RQ
Sbjct:   52 PFELVFIEEVLRDACDTFNRRLRVYEPIVDTFMSRTTNE--VFSDAGVQKLVPIKDSLQDFELTVKQCLECLTHLLGNDEDMLGLLLTEKAKASSKGEHLRHEMHEAVELLFEEYARQ 167          
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Match: A0A8J2SNL6_9STRA (Magnesium transporter n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNL6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.420e-12
Identity = 49/116 (42.24%), Postives = 63/116 (54.31%), Query Frame = 1
Query:   64 FELVVLEHFLQEVCTAYQRRVHIFSRVATTVLSEVTQQTTLGSRADFYKLVPIRAALKEFELSTLALRGCLADLLGSDEDLLALLLTERRRLRAGEHMDPRRHEAAELLLENYHRQ 411
            FEL VLE  L EV +++QRR  ++  V    L E + +         ++L     AL  FE  T      L +LL SDED+L LLL+ERR   AG  +DP RH   ELLLE YHR+
Sbjct:  133 FELAVLEAVLAEVSSSFQRRRDLYEPVVQKQLREASCEFDGFGVDGLHRLSAFDGALMSFEAETRQALQVLDELLASDEDMLGLLLSERR---AGTSVDPERHGVVELLLEAYHRR 245          
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Match: A0A813IX34_POLGL (Magnesium transporter (Fragment) n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IX34_POLGL)

HSP 1 Score: 72.4 bits (176), Expect = 4.660e-12
Identity = 43/122 (35.25%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   61 PFELVVLEHFLQEVCTAYQRRVHIFSRVATTVLSEVTQQTTLGSRADFYKLVPIRAALKEFELSTLALRGCLADLLGSDEDLLALLLTERRRLRAGEHMDPRRHEAAELLLENYHRQARLLL 426
            PFEL+VLE  L+++C +++RR  ++  +A ++L+ ++      +     ++V ++ AL +FEL+   +   L +LL SDED++ L+++  R         P +HE  ELLLENYHRQ  L L
Sbjct:  208 PFELMVLEEALRDICESFRRRAGLYRPLAESLLNGLS---VASAEQGLQRVVVLKDALGDFELAVKDMVALLKELLDSDEDMVGLVVSHGR--------TPSQHEDVELLLENYHRQLTLTL 318          
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Match: A0A7S2WFL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WFL9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.420e-10
Identity = 35/106 (33.02%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   61 PFELVVLEHFLQEVCTAYQRRVHIFSRVATTVLSEVTQQTTLGSRADFYKLVPIRAALKEFELSTLALRGCLADLLGSDEDLLALLLTER-------RRLRAGEHM 357
            PFELV +E  L++ C  +  R+ ++  +  + L++++    +   ++  +LVPI+ +L+EFE+       CL ++LG++EDLL LL+TE+       R+L  G+HM
Sbjct:   11 PFELVFVEEILRDACNTFDLRLKVYEPIVDSSLNQIS----VAEDSEANRLVPIKDSLQEFEIQVKQSLKCLTNMLGNEEDLLNLLITEKAEAQQKGRKLDFGKHM 112          
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Match: A0A7S3LGS3_9STRA (Magnesium transporter n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LGS3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.480e-10
Identity = 40/114 (35.09%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   61 PFELVVLEHFLQEVCTAYQRRVHIFSRVATTVLSEVTQQTTLGSRADFYKLVPIRAALKEFELSTLALRGCLADLLGSDEDLLALLLTERRRLRAGEHMDPRRHEAAELLLENY 402
            PFE   LE  L  VC  Y  R  + + +   VL E++ +    +    +KL+P++  +  FE+ T  +R CL ++L +DED++ +LL+E+++   G      RHE  ELLLENY
Sbjct:  277 PFECKALEGILSHVCRHYYNRTELITPLVENVLDELSAKKV--NPETLHKLLPMKDFISLFEIETTLMRNCLNEVLQNDEDMVNMLLSEKKK-HFGTPPPIERHEEVELLLENY 387          
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Match: A0A7J7IGR2_9RHOD (Magnesium transporter n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGR2_9RHOD)

HSP 1 Score: 58.2 bits (139), Expect = 4.520e-7
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 1
Query:   55 ETPFELVVLEHFLQEVCTAYQRRVHIFSRVATTVLSEVTQQTTLGSRADFYKLVPIRAALKEFELSTLALRGCLADLLGSDEDLLALLLTERRRLRAGEHMDPRRHEAAELLLENY 402
            E PFEL  LE  L EVC A +R +         +L+E+T++  +G R    +++ ++  L  F +    +R  L DLLG DED+  + LTE ++    E   P  HE  E LLE+Y
Sbjct:  374 EAPFELHALESILIEVCVALERDLACIEPSLMRLLNEITRK--IGGRK-LEEMLYLKQMLSNFSVRVDGVRDALQDLLGEDEDMARMYLTEMKKHPETER-PPTAHEQVEELLESY 485          
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Match: W7TUB2_9STRA (Mitochondrial rna splicing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUB2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.120e-7
Identity = 39/124 (31.45%), Postives = 58/124 (46.77%), Query Frame = 1
Query:   64 FELVVLEHFLQEVCTAYQRRVHIFSRVATTVLSEVTQQTTLGSRADFYKLVPIRAALKEFELSTLALRGCLADLLGSDEDLLALLLTERRRLRAGE--------HMDPRRHEAAELLLENYHRQ 411
            +ELVVLE  L+  C  + R   +   +  T L  +            Y+LVP++  L   + +     G L  L+  DED+LA+LLTE+  L+  +         +D   H   ELLLENY R+
Sbjct:  215 YELVVLEQALRSFCNQFSRIKELLGLIVETSLKALVDSQGSDQEEQLYRLVPLKDGLSVAQHNMQEAVGVLQQLVDCDEDMLAMLLTEKAALQKEKARVSSQAARLDLNLHSDVELLLENYLRE 338          
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Match: A0A1U7LTH9_NEOID (Magnesium transporter n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LTH9_NEOID)

HSP 1 Score: 53.9 bits (128), Expect = 1.240e-5
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = 1
Query:   61 PFELVVLEHFLQEVCTAYQRRVHIFSRVATTVLSEVTQQTTLGSRADFYKLVPIRAALKEFELSTLALRGCLADLLGSDEDLLALLLTERRRLRAGEHMDPRRHEAAELLLENYHRQ 411
            P+EL  +E  L  V TA    + I   + TT+LS++ +      R +  +L+     L  FE     +R  L ++L SDEDL+ + L+E+RR   G+     +H+  ELLLE Y +Q
Sbjct:  191 PYELRAVEAVLISVTTALNAEMKILQSLVTTLLSDLEEHI---DRDNLRRLLVYSKNLSAFEKKATLVRDTLDEILESDEDLVGMYLSEKRR---GKERSLDQHDEVELLLEAYLQQ 301          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13323.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A836C9F9_9STRA6.550e-2854.62Magnesium transporter n=1 Tax=Tribonema minus TaxI... [more]
A0A6S8XKU5_9STRA4.140e-2044.00Magnesium transporter n=1 Tax=Chaetoceros debilis ... [more]
A0A7S4HRH7_9STRA7.090e-1943.22Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A8J2SNL6_9STRA2.420e-1242.24Magnesium transporter n=1 Tax=Pelagomonas calceola... [more]
A0A813IX34_POLGL4.660e-1235.25Magnesium transporter (Fragment) n=3 Tax=Polarella... [more]
A0A7S2WFL9_9STRA1.420e-1033.02Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3LGS3_9STRA1.480e-1035.09Magnesium transporter n=1 Tax=Aplanochytrium stocc... [more]
A0A7J7IGR2_9RHOD4.520e-735.34Magnesium transporter n=1 Tax=Cyanidiococcus yangm... [more]
W7TUB2_9STRA6.120e-731.45Mitochondrial rna splicing protein n=2 Tax=Monodop... [more]
A0A1U7LTH9_NEOID1.240e-533.33Magnesium transporter n=1 Tax=Neolecta irregularis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13323contigP-wetherbeei_contig13323:745..1725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPU8
Preferred nameMRS2
PFAMsCorA
Model size438
Max annot lvl2759|Eukaryota
KEGG rclassRC00537,RC00983
KEGG koko:K01053,ko:K12765,ko:K16075
KEGG TC1.A.35.5
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko04113,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map04113
KEGG ModuleM00129
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006089,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0008324,GO:0009987,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0016020,GO:0016021,GO:0019752,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032787,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045016,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071704,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901615,GO:1903830,GO:1990542
Exons3
Evalue1.53e-26
EggNOG OGsKOG2662@1|root,KOG2662@2759|Eukaryota
Ec32 ortholog descriptioninner membrane magnesium transporter
Ec32 orthologEc-18_002560.1
EC2.7.11.1,3.1.1.17
Descriptionmagnesium ion transmembrane transporter activity
Cds size438
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185981.333583-CDS-P-wetherbeei_contig13323:744..9451683185981.333583-CDS-P-wetherbeei_contig13323:744..945Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13323 745..945 -
1683185981.3492565-CDS-P-wetherbeei_contig13323:1144..12621683185981.3492565-CDS-P-wetherbeei_contig13323:1144..1262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13323 1145..1262 -
1683185981.357206-CDS-P-wetherbeei_contig13323:1606..17251683185981.357206-CDS-P-wetherbeei_contig13323:1606..1725Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13323 1607..1725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13323.2.1prot_P-wetherbeei_contig13323.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13323 745..1725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13323.2.1

>prot_P-wetherbeei_contig13323.2.1 ID=prot_P-wetherbeei_contig13323.2.1|Name=mRNA_P-wetherbeei_contig13323.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MLDEERRQSELLRLAQEPETPFELVVLEHFLQEVCTAYQRRVHIFSRVAT
TVLSEVTQQTTLGSRADFYKLVPIRAALKEFELSTLALRGCLADLLGSDE
DLLALLLTERRRLRAGEHMDPRRHEAAELLLENYHRQARLLLFAR*
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mRNA from alignment at P-wetherbeei_contig13323:745..1725-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13323.2.1 ID=mRNA_P-wetherbeei_contig13323.2.1|Name=mRNA_P-wetherbeei_contig13323.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig13323:745..1725- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTAGATGAAGAGCGGCGGCAGTCGGAGCTGCTGCGGCTGGCGCAGGA GCCTGAAACGCCCTTCGAGCTCGTCGTCTTGGAGCACTTTTTGCAGGAAG TCTGCACCGCCTACCAGAGGTGCGTTGGGGGAGGAAGCTGCTTGTTCCTC TTGGTTATAATGATCTGGCGGAGGTTTTCGCTGTTGGCTTGAGGGCTGCT TTGTTACCGCAACTGTCGGCGGGTTCCTCTTCGTGCCAGCAAGCCGCCCA CTTCTCCATCTCAACCTGTTTCCAGTCTTTCACCCCTTGCACTTTCGCGG CCTCCGATCCTGCCTGCCGCCACACATCTCTTCAATTCAATTTGTTCCTT GTTTCACCAGTTGCGCGTTTGCCGCCCCACCAATCCTCTTGCCACGTACC TTCGCGGCGTGTATTTCGGACCCTGACGGTGGCGGTGTGCGGCGACGGCG GTGGCGGCACCAGGCGGGTGCACATCTTCTCGCGGGTGGCGACGACGGTG CTATCGGAGGTGACGCAGCAGACAACGCTCGGCTCGCGGGCCGACTTCTA CAAACTCGTCCCCATCCGCGCCGCCCTCAAGGTGAAAGAGAGGCGTGCAG ATTGGTTAACTGAGACCTTTCGAGCCGCGTTGGTGCCCCATGCTCGCCTT CATGTTTCCTTGCGAGGAGCGCTGGGTTTACTTCCTGAAGGCCTGATGTT GCCACCCTGACCCCCGCTACCCCGGAAAGACCGCAGCTTTTCCCTCTCAT CCCCTTCCACTTCCCCTTCCTTCGAAAAAGGAGTTTGAGTTGAGCACGCT CGCGTTGCGCGGCTGCCTGGCAGACCTTTTGGGCAGCGATGAGGATCTGC TGGCGCTGCTGCTGACGGAGCGGCGGCGGCTCCGCGCCGGAGAGCATATG GATCCCCGCAGGCACGAGGCGGCCGAGCTGCTGCTCGAAAACTATCACCG GCAGGCAAGGTTACTGCTTTTCGCACGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13323:745..1725-

>mRNA_P-wetherbeei_contig13323.2.1 ID=mRNA_P-wetherbeei_contig13323.2.1|Name=mRNA_P-wetherbeei_contig13323.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig13323:745..1725- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTAGATGAAGAGCGGCGGCAGTCGGAGCTGCTGCGGCTGGCGCAGGA
GCCTGAAACGCCCTTCGAGCTCGTCGTCTTGGAGCACTTTTTGCAGGAAG
TCTGCACCGCCTACCAGAGGCGGGTGCACATCTTCTCGCGGGTGGCGACG
ACGGTGCTATCGGAGGTGACGCAGCAGACAACGCTCGGCTCGCGGGCCGA
CTTCTACAAACTCGTCCCCATCCGCGCCGCCCTCAAGGAGTTTGAGTTGA
GCACGCTCGCGTTGCGCGGCTGCCTGGCAGACCTTTTGGGCAGCGATGAG
GATCTGCTGGCGCTGCTGCTGACGGAGCGGCGGCGGCTCCGCGCCGGAGA
GCATATGGATCCCCGCAGGCACGAGGCGGCCGAGCTGCTGCTCGAAAACT
ATCACCGGCAGGCAAGGTTACTGCTTTTCGCACGGTGA
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