mRNA_P-wetherbeei_contig13316.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13316.1.1
Unique NamemRNA_P-wetherbeei_contig13316.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Match: A0A6H5JQU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU5_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.550e-85
Identity = 127/217 (58.53%), Postives = 166/217 (76.50%), Query Frame = 1
Query:    1 MQRDGLSGVEISRSEKAYISQGVELGIRGDGRGRLDYRGIMVDADGLAQANGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRFDERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQANGGLLDAASFAAYVALNTARVPRVTLVTGESGLGDDFELSGDVADAAPIAGAKNAPICISLSKVGG 651
            M R  L+G+  S SE+ Y++ GVELG+RGDGRGRLDYR + V A  LAQ+NGS+R+++AH  TDVLAA+KVEVG P   AP  GR+EV + CSNSLFP+FDER+SGD++A+LS  L   +     L L  L IV GK+CWVV+VD+L+LQA+G LLDA+SFAAY ALNTAR+P+VT + GE G+ DDFE+S ++ DA  I GA N P+C+++S+VGG
Sbjct:    1 MSRSTLTGLNTSSSEREYVALGVELGMRGDGRGRLDYRSLSVQAGVLAQSNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGRVEVCISCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGGLDLDALGIVDGKFCWVVFVDILVLQADGNLLDASSFAAYTALNTARIPKVTPLVGEGGIYDDFEISSNIDDAVAIKGATNVPVCLTMSRVGG 217          
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Match: D7FYR5_ECTSI (RNase_PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR5_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 9.300e-85
Identity = 126/216 (58.33%), Postives = 164/216 (75.93%), Query Frame = 1
Query:    1 MQRDGLSGVEISRSEKAYISQGVELGIRGDGRGRLDYRGIMVDADGLAQANGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRFDERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQANGGLLDAASFAAYVALNTARVPRVTLVTGESGLGDDFELSGDVADAAPIAGAKNAPICISLSKVG 648
            M R  L+G+  S SE+ Y++ GVELG+RGDGRGRLDYR + V A  LAQ+NGS+R+++AH  TDVLAA+KVEVG P   AP  GR+EV V CSNSLFP+FDER+SGD++A+LS  L   +     L L  L IV GK+CWVV+VD+L+LQA+G LLDA+SFAAY ALNTAR+P+VT + GE G+ DDFE+S ++ DA  I GA N P+C+++S+ G
Sbjct:    1 MSRSTLTGLNTSSSEREYVALGVELGMRGDGRGRLDYRSLSVQAGVLAQSNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMQGVGGLDLDALGIVDGKFCWVVFVDILVLQADGNLLDASSFAAYTALNTARIPKVTPLVGEGGIYDDFEISSEIDDAVAIKGATNVPVCLTMSRNG 216          
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Match: A0A7S2Y3L9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3L9_9STRA)

HSP 1 Score: 231 bits (590), Expect = 6.790e-73
Identity = 116/207 (56.04%), Postives = 151/207 (72.95%), Query Frame = 1
Query:   31 ISRSEKAYISQGVELGIRGDGRGRLDYRGIMVDADGLAQANGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRFDERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQANGGLLDAASFAAYVALNTARVPRVTLVTGESGLG-DDFELSGDVADAAPIAGAKNAPICISLSKVG 648
            IS SEK YI  GVE G+R DGRG +D+R + V+     QANGS R+ + HGAT V+A +K EVG PSPS P EGR+ V VE S S+FP+FD+R + DL A  +  L  VI +S  +    LCI+PG++CWVVYVD+L+L+A+G +LDA SFAAY ALNTARVP++T+V GE+G   DDFELS DVAD+ P+  A++ P+CI+LS VG
Sbjct:    6 ISSSEKQYIILGVEQGVRCDGRGCMDFRPMEVETGVFPQANGSVRVKIDHGATSVIAVVKCEVGEPSPSRPREGRVVVGVEISGSMFPKFDDRHAADLQAEATGALARVIQDSSTMDTHSLCIIPGRFCWVVYVDILVLRADGNVLDATSFAAYAALNTARVPKLTVVPGEAGASEDDFELSSDVADSVPLL-AQDVPVCITLSLVG 211          
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Match: A0A7S3XUS1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUS1_HETAK)

HSP 1 Score: 229 bits (585), Expect = 1.030e-72
Identity = 113/209 (54.07%), Postives = 149/209 (71.29%), Query Frame = 1
Query:   22 GVEISRSEKAYISQGVELGIRGDGRGRLDYRGIMVDADGLAQANGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRFDERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQANGGLLDAASFAAYVALNTARVPRVTLVTGESGLGDDFELSGDVADAAPIAGAKNAPICISLSKVG 648
            G   SRSEK YI  GVE GIR DGRGRLDYR + ++ + L QANGS+R++++HGAT V+AA KVEVG P P  P EGR+ V  E SN+LFPR D+RA+ + +A L+  L  +I  S  L L +LCI+PGK+CWV+++DVLIL +NG +LD AS AAYV LNT R+P+ T+   E G G DF++S D ADA  + GA   P+ ++L+KVG
Sbjct:    5 GGATSRSEKEYILLGVEQGIRTDGRGRLDYRPVAIETNILPQANGSARVTISHGATTVIAASKVEVGKPDPRRPREGRVSVGAEVSNALFPRADDRANLEANAELASALTRIIVNSDTLDLEQLCIIPGKFCWVIHLDVLILSSNGNILDPASMAAYVTLNTTRIPKTTVFELEGGGGQDFDISSDFADAELVPGADLLPVAVTLAKVG 213          
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Match: A0A835YWB1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB1_9STRA)

HSP 1 Score: 224 bits (570), Expect = 5.480e-71
Identity = 110/187 (58.82%), Postives = 141/187 (75.40%), Query Frame = 1
Query:   88 DGRGRLDYRGIMVDADGLAQANGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRFDERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQANGGLLDAASFAAYVALNTARVPRVTLVTGE-SGLGDDFELSGDVADAAPIAGAKNAPICISLSKV 645
            DGRG LDYR I V  + L QANGS+RI++AHG T+VLAA+K+E G PS  AP EGR+EV VECSNSLFP FD+R+ GD++A LS +L   + ES AL L  LCI+PG++CW+VY+DVL+LQA+G LLDAASFAAYVA NTA VPR T+++GE +G+ DDFE+ GD+  A  + GA      + L +V
Sbjct:    9 DGRGWLDYRSISVQGEVLPQANGSARITIAHGGTEVLAAVKIETGVPSADAPHEGRVEVCVECSNSLFPTFDDRSGGDVNAALSLMLARTVVESGALDLKSLCIIPGRFCWIVYLDVLVLQADGNLLDAASFAAYVAFNTALVPRTTVISGEGAGVEDDFEIDGDLNTATRLPGADKVHEQLHLDQV 195          
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Match: A0A7S1GE40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE40_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.600e-55
Identity = 93/205 (45.37%), Postives = 137/205 (66.83%), Query Frame = 1
Query:   37 RSEKAYISQGVELGIRGDGRGRLDYRGIMVDADGLAQANGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRFDERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQANGGLLDAASFAAYVALNTARVPRVTLVTGESGLGDDFELSGDVADAAPIAGAKNAPICISLSKVGG 651
            ++E+A++  GV+ G+RGDGRGRLDYR + VDA  LAQANGS+R+++ + ATDVL A+K E+  PSP AP  GR+E SV C +S  P+F+ R +  ++A L+  L   +  S A+ L  LC++PG+ CWV+YVDV++L + G + DA S AA+ AL   R+PR+ +V GE+    D E+  D A AA   G +  P+ I+  ++GG
Sbjct:    1 KAERAFVQAGVDAGVRGDGRGRLDYRFVSVDAGLLAQANGSARVTLVNAATDVLGAVKAELAEPSPDAPDAGRVECSVACWSSASPQFEGRGADAINAQLTAALERTLGSSGAIDLKSLCVIPGRMCWVLYVDVIVLDSGGSIDDAVSLAAHAALRDTRLPRLYVVPGETEEEADVEVEEDPA-AAVALGVEALPVTITFFQLGG 204          
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Match: A0A3B1J5J7_ASTMX (Exosome component 7 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J5J7_ASTMX)

HSP 1 Score: 163 bits (412), Expect = 5.480e-46
Identity = 88/211 (41.71%), Postives = 124/211 (58.77%), Query Frame = 1
Query:   16 LSGVEISRSEKAYISQGVELGIRGDGRGRLDYRGIMVDADGLAQANGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRFDERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQANGGLLDAASFAAYVALNTARVPRVTLVTGESGLGDDFELSGDVADAAPIAGAKNAPICISLSKVG 648
            ++ V++S +EK YI  GV   +R DGRG  DYR + V+ D ++  +GS+++S+ H  TDVL  IK E+G P P+ P EG +E  V+CS +  P F+ R   +L   LS  L  V     +L L  LCI PG+ CWV+Y+DVL+LQ +G L DA S A   AL   R+P+V +   E G G + ELS D  D   +    N P  ++LSK+G
Sbjct:    1 MATVQVSEAEKVYIMHGVRDDLRVDGRGCEDYRHMEVETDVVSNTDGSAKVSLGH--TDVLVGIKAEIGKPKPAVPNEGYVEFFVDCSANATPEFEGRGGEELGVELSNTLYKVFNNRHSLDLRSLCICPGEHCWVLYIDVLLLQCDGNLFDAMSVAIKAALFNTRIPKVQVSEDEEG-GKEIELSDDPYDCMRLD-VTNVPCIVTLSKIG 207          
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Match: A0A3B3SY60_9TELE (Exosome component 7 n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SY60_9TELE)

HSP 1 Score: 162 bits (411), Expect = 7.530e-46
Identity = 87/211 (41.23%), Postives = 125/211 (59.24%), Query Frame = 1
Query:   16 LSGVEISRSEKAYISQGVELGIRGDGRGRLDYRGIMVDADGLAQANGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRFDERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQANGGLLDAASFAAYVALNTARVPRVTLVTGESGLGDDFELSGDVADAAPIAGAKNAPICISLSKVG 648
            ++ V++  +EK YI  GV   +R DGRG  DYR + ++ D ++  +GS+R+ + +  TDVL  IK E+G P P+AP EG +E  V+CS +  P F+ R   +L + LS  L  V     +L L  LCI P + CWV+YVDVL+LQ +G L DA S A   AL   R+P+VT+  GE G G + ELS D  D   +   +N P  ++L K+G
Sbjct:    1 MAAVQVCEAEKVYIMHGVRDDLRVDGRGCEDYRHMEIETDVVSNTDGSARVKLGY--TDVLVGIKAEIGKPKPAAPDEGYLEFFVDCSANATPEFEGRGGEELGSELSCTLYKVFNNVNSLELRALCIAPREHCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVTITEGEEG-GAELELSDDPYDCVRL-NVENVPCIVTLCKIG 207          
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Match: A0A4Y7NLX5_9CRUS (EOG090X0CWA n=1 Tax=Moina brachiata TaxID=675436 RepID=A0A4Y7NLX5_9CRUS)

HSP 1 Score: 161 bits (408), Expect = 2.060e-45
Identity = 86/211 (40.76%), Postives = 127/211 (60.19%), Query Frame = 1
Query:   16 LSGVEISRSEKAYISQGVELGIRGDGRGRLDYRGIMVDADGLAQANGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRFDERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQANGGLLDAASFAAYVALNTARVPRVTLVTGESGLGDDFELSGDVADAAPIAGAKNAPICISLSKVG 648
            ++ V IS +EKA+I  GV+  +R DGR RLDYR I ++   ++ A+GS+R+ +A+  +D+L  IKVE+  PSP  P+EGRIE  V+CS +  P F+ R   DL   +SQ L    A    L L ELC++PG  CW++Y+D+LIL+  G L DA S A   AL   ++P V +   +  +  + ELS D  D   +   +NAP  ++L K+G
Sbjct:    1 MAEVLISEAEKAFIHHGVQDDLRCDGRSRLDYRPIYLETGIVSNASGSARLRLAN--SDILVGIKVELAAPSPDKPSEGRIEFFVDCSANATPEFEGRGGEDLANQISQFLQRAYASIDTLNLSELCVIPGLQCWILYIDILILECGGNLFDAVSLAVKSALYATQIPSVKVAAIDGDV-PELELSDDPYDTKSL-NVQNAPSAVTLMKIG 207          
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Match: J9KAN7_ACYPI (Uncharacterized protein n=11 Tax=Aphididae TaxID=27482 RepID=J9KAN7_ACYPI)

HSP 1 Score: 159 bits (402), Expect = 1.590e-44
Identity = 88/211 (41.71%), Postives = 127/211 (60.19%), Query Frame = 1
Query:   16 LSGVEISRSEKAYISQGVELGIRGDGRGRLDYRGIMVDADGLAQANGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRFDERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQANGGLLDAASFAAYVALNTARVPRVTLVTGESGLGDDFELSGDVADAAPIAGAKNAPICISLSKVG 648
            +S V ++ +EK YI  GVE   R DGR R DYR + ++ D ++ ANGS+R+ +A+  +D+L  +KVE+ TP P AP +G+IE  V+CS +  P F+ R    L A LS+ L   +A      L +LCIVPG+ CW ++VDVLIL+  G L DA S AA  AL    +P + + T E G   D ++S D  D  P+  A + P+ +SL K+G
Sbjct:    1 MSLVSLNEAEKVYIIHGVEENFRCDGRSRQDYRPLELEMDIVSNANGSARLRLAN--SDILVCVKVEIDTPLPEAPKDGKIEYFVDCSANATPAFEGRGGEHLAAELSRFL--CLAHGPVFNLSKLCIVPGQSCWKLFVDVLILECGGNLFDAVSLAAKAALCNTSLPNI-VGTYEDGQNIDLQISDDPFDTKPLE-ASDLPVLVSLCKIG 205          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13316.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQU5_9PHAE1.550e-8558.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYR5_ECTSI9.300e-8558.33RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2Y3L9_9STRA6.790e-7356.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XUS1_HETAK1.030e-7254.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YWB1_9STRA5.480e-7158.82Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A7S1GE40_9STRA1.600e-5545.37Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A3B1J5J7_ASTMX5.480e-4641.71Exosome component 7 n=2 Tax=Astyanax mexicanus Tax... [more]
A0A3B3SY60_9TELE7.530e-4641.23Exosome component 7 n=1 Tax=Paramormyrops kingsley... [more]
A0A4Y7NLX5_9CRUS2.060e-4540.76EOG090X0CWA n=1 Tax=Moina brachiata TaxID=675436 R... [more]
J9KAN7_ACYPI1.590e-4441.71Uncharacterized protein n=11 Tax=Aphididae TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13316contigP-wetherbeei_contig13316:17..1402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYR5
Preferred nameEXOSC7
PFAMsRNase_PH,RNase_PH_C
Model size657
Max annot lvl2759|Eukaryota
KEGG koko:K12589
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Exons3
Evalue1.52e-85
EggNOG OGsCOG2123@1|root,KOG1612@2759|Eukaryota
Ec32 ortholog descriptionRrp42 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-26_004200.1
DescriptionU1 snRNA 3'-end processing
Cds size657
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185981.1258934-CDS-P-wetherbeei_contig13316:16..2261683185981.1258934-CDS-P-wetherbeei_contig13316:16..226Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13316 17..226 +
1683185981.1371624-CDS-P-wetherbeei_contig13316:518..7491683185981.1371624-CDS-P-wetherbeei_contig13316:518..749Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13316 519..749 +
1683185981.1465673-CDS-P-wetherbeei_contig13316:1186..14021683185981.1465673-CDS-P-wetherbeei_contig13316:1186..1402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13316 1187..1402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13316.1.1prot_P-wetherbeei_contig13316.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13316 17..1402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13316.1.1

>prot_P-wetherbeei_contig13316.1.1 ID=prot_P-wetherbeei_contig13316.1.1|Name=mRNA_P-wetherbeei_contig13316.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=219bp
MQRDGLSGVEISRSEKAYISQGVELGIRGDGRGRLDYRGIMVDADGLAQA
NGSSRISVAHGATDVLAAIKVEVGTPSPSAPAEGRIEVSVECSNSLFPRF
DERASGDLDALLSQLLGGVIAESRALRLGELCIVPGKWCWVVYVDVLILQ
ANGGLLDAASFAAYVALNTARVPRVTLVTGESGLGDDFELSGDVADAAPI
AGAKNAPICISLSKVGGF*
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mRNA from alignment at P-wetherbeei_contig13316:17..1402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13316.1.1 ID=mRNA_P-wetherbeei_contig13316.1.1|Name=mRNA_P-wetherbeei_contig13316.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1386bp|location=Sequence derived from alignment at P-wetherbeei_contig13316:17..1402+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGAGAGACGGGCTGTCCGGAGTCGAGATATCGCGCTCCGAAAAGGC GTACATATCCCAAGGAGTCGAGCTCGGCATCCGCGGCGATGGACGAGGCA GGCTGGACTACAGAGGGATCATGGTGGACGCAGACGGCTTGGCCCAGGCC AATGGGTCGAGCCGAATCAGCGTCGCGCACGGAGCGACCGATGTATTGGC TGCCATCAAGGTAAGGGTGTGGCAAAAATCATCACATTGACGAAATCAGC AGCGAAAAGCCACACCATCATAGATTTTCAGGCGGAGAATGATTGGAAAC GAGTGTTACTGGGTATGAATTCCGCAGTCGGAGCGCTTTAAACTCGTTCT TGTCTCCTTCAGTTTGTAGTGTATTACCAGCCTTGCGCCTTCTCTCGCTG ATGGCAACCCCACCGTCGCCGCCCTCCCTTTGCCACTCACCCGACCGATC GCCCGCTCCCCTCCACCCGCTCGGCCTGCGTCCAATCAAAACAACGGTCC AGGTAGAGGTGGGGACGCCGTCACCGAGCGCCCCCGCTGAGGGCCGGATC GAGGTGAGCGTGGAATGCTCAAACAGTCTCTTCCCGCGCTTCGACGAGCG GGCGTCGGGCGACCTCGACGCCCTCCTAAGCCAGCTGCTGGGTGGCGTCA TTGCCGAGTCGCGGGCTCTGCGGCTCGGCGAGCTGTGCATCGTGCCGGGC AAGTGGTGTTGGGTCGTGTACGTCGACGTCCTGGTGCGTGCTGTTTGCGT TTCTTCAGACTGCCTGCGCCGGGAAGGCAGATTGGGTCGAACGCTTTTGT AGCCGACTTCGTTCAATTTAGTCTCTTTTTGTATGCTCCCTTCTGGCGGT GTTTCCAAGCCTACGCTCGGTTCTCATTGCATTCACCCTCGTTTCAAATG CCGACTAAGGCCAGCCGGATTTTGACCCTCCAGTTTTCCAGGATGTAACC CACATTTCAATCCTAAACATGTCTTTTTCACCACTTTGCCGATCCGCTGC AGTCAGAAGTCGGCCTGCTCATTATTAGGACCAGTTTCTTGCCTCAGCCC CTTCGCCTCATTTTCTGCTGTTTTATTGAACCCATTACGGTAGCTCCGGC CCCTTTTGCTCCTTCGGCGCTCCCTCCACCGCTTGCTTGCTGCTGTTCCG GCGCGCCTCAATCCCCGCAGATCTTGCAAGCGAACGGCGGCCTGCTGGAC GCGGCGTCATTTGCGGCGTACGTGGCACTCAACACGGCGCGGGTGCCGCG GGTGACGCTGGTGACGGGGGAGAGCGGCCTCGGCGACGACTTCGAGCTGT CGGGCGATGTGGCTGACGCGGCGCCCATCGCCGGCGCCAAGAACGCCCCT ATCTGCATCAGCTTGTCCAAGGTGGGTGGTTTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13316:17..1402+

>mRNA_P-wetherbeei_contig13316.1.1 ID=mRNA_P-wetherbeei_contig13316.1.1|Name=mRNA_P-wetherbeei_contig13316.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=657bp|location=Sequence derived from alignment at P-wetherbeei_contig13316:17..1402+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGAGAGACGGGCTGTCCGGAGTCGAGATATCGCGCTCCGAAAAGGC
GTACATATCCCAAGGAGTCGAGCTCGGCATCCGCGGCGATGGACGAGGCA
GGCTGGACTACAGAGGGATCATGGTGGACGCAGACGGCTTGGCCCAGGCC
AATGGGTCGAGCCGAATCAGCGTCGCGCACGGAGCGACCGATGTATTGGC
TGCCATCAAGGTAGAGGTGGGGACGCCGTCACCGAGCGCCCCCGCTGAGG
GCCGGATCGAGGTGAGCGTGGAATGCTCAAACAGTCTCTTCCCGCGCTTC
GACGAGCGGGCGTCGGGCGACCTCGACGCCCTCCTAAGCCAGCTGCTGGG
TGGCGTCATTGCCGAGTCGCGGGCTCTGCGGCTCGGCGAGCTGTGCATCG
TGCCGGGCAAGTGGTGTTGGGTCGTGTACGTCGACGTCCTGATCTTGCAA
GCGAACGGCGGCCTGCTGGACGCGGCGTCATTTGCGGCGTACGTGGCACT
CAACACGGCGCGGGTGCCGCGGGTGACGCTGGTGACGGGGGAGAGCGGCC
TCGGCGACGACTTCGAGCTGTCGGGCGATGTGGCTGACGCGGCGCCCATC
GCCGGCGCCAAGAACGCCCCTATCTGCATCAGCTTGTCCAAGGTGGGTGG
TTTTTGA
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