mRNA_P-wetherbeei_contig13263.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13263.1.1
Unique NamemRNA_P-wetherbeei_contig13263.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Match: A0A345ZQK5_9HYPH (PilZ domain-containing protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZQK5_9HYPH)

HSP 1 Score: 110 bits (274), Expect = 1.630e-29
Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 MQRDKRRSRRRPMRYHAVLVLDGDAQRGCILSDISDTGARIDVDTADELPNRFVLLLSGNGSPQRHCRVVWRQPTQVGVNFDGRLPADERTGLVP 285
            M++D+R+S RR +RY A L L     RGC LSDIS+TGARIDV+ +  LPN F L L+ NGS +R+CRVVWR P QVGV F GRL + ER  L P
Sbjct:    1 MRKDQRKSPRRSVRYAAWLALAPGELRGCALSDISNTGARIDVENSATLPNEFALWLASNGSARRNCRVVWRTPKQVGVRFAGRLASGERAALAP 95          
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Match: A0A1Q4DFF8_9HYPH (PilZ domain-containing protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DFF8_9HYPH)

HSP 1 Score: 94.0 bits (232), Expect = 8.940e-23
Identity = 41/84 (48.81%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 MQRDKRRSRRRPMRYHAVLVLDGDAQRGCILSDISDTGARIDVDTADELPNRFVLLLSGNGSPQRHCRVVWRQPTQVGVNFDGR 252
            M+ DKR+S R+P+RY A + LD + +  C+LSD+SD+GAR++VD +  +P +FVLLL+   +P+R+C VVWR+  Q+GV F+ R
Sbjct:    1 MKSDKRKSPRKPLRYSAWIALDDEQRVSCLLSDVSDSGARLEVDGSANIPAQFVLLLAQRNAPKRYCTVVWRENNQIGVRFERR 84          
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Match: A0A833GFT6_9HYPH (PilZ domain-containing protein n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GFT6_9HYPH)

HSP 1 Score: 78.6 bits (192), Expect = 5.720e-17
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 RDKRRSRRRPMRYHAVLV-LDGDAQRGCILSDISDTGARIDVDTADELPNRFVLLLSGNGSPQRHCRVVWRQPTQVGVNFD 246
            +D+RR+RRR +RY A +V +DG     C+++D+S TGAR+ V+    LP+ F+L L+G  +P+R C +VWR  +Q GV F+
Sbjct:    6 KDQRRNRRRSLRYPARIVSVDGRETMPCVVTDVSQTGARVKVEDGGSLPDDFILRLAGGENPRRVCHLVWRAKSQAGVRFE 86          
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Match: A0A1W6ZXK2_9HYPH (PilZ domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZXK2_9HYPH)

HSP 1 Score: 65.9 bits (159), Expect = 3.680e-12
Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 1
Query:   13 KRRSRRRPMRYHAVLVLDGD-AQRGCILSDISDTGARIDVDTADELPNRFVLLLSGNGSPQRHCRVVWRQPTQVGVNF 243
            K R  RR +   A LV DGD A R C + D+SD GAR+++D  D LP RF L  S      RHC V W+    VGV F
Sbjct:    7 KTRPSRRRVDKQAWLVFDGDFALRPCTVIDMSDDGARLNIDQTDRLPKRFSLTFSRASRAGRHCEVRWKHGRSVGVKF 84          
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Match: A0A6S6QW69_9HYPH (PilZ domain-containing protein n=1 Tax=Terrihabitans soli TaxID=708113 RepID=A0A6S6QW69_9HYPH)

HSP 1 Score: 63.9 bits (154), Expect = 2.900e-11
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   10 DKRRSRRRPMRYHAVLVLDGDAQRGCILSDISDTGARIDVDTADELPNRFVLLLSGNGSPQRHCRVVWRQPTQVGVNF 243
            D+R   RR M   A ++L    +  C + ++S  GA I++DTA ELP RFVL LSGN   +R C +VW+  T +GV+F
Sbjct:    8 DQRAYPRRAMARRAAILLSQTQEVECTIRNLSRNGAMIELDTAIELPKRFVLDLSGNIVVRRLCDLVWQDGTTLGVHF 85          
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Match: A0A127EZL0_9HYPH (PilZ domain-containing protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EZL0_9HYPH)

HSP 1 Score: 61.6 bits (148), Expect = 2.960e-10
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   64 DGDAQRGCILSDISDTGARIDVDTADELPNRFVLLLSGNGSPQRHCRVVWRQPTQVGVNFDGRLPADERTGLV 282
            +G   R C ++DIS+TGAR+   + D++P++FVLL++G+ S +  CRV WR   +VGV F  +     R  LV
Sbjct:   23 NGSLPRDCTITDISETGARLFA-SGDDIPDQFVLLITGDKSIREECRVAWRLGGEVGVEFITKEREFRRAELV 94          
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Match: UPI000378F141 (hypothetical protein n=1 Tax=Methylobacterium sp. 77 TaxID=1101192 RepID=UPI000378F141)

HSP 1 Score: 59.7 bits (143), Expect = 9.000e-10
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   22 SRRRPMRYHAVLVLDGDAQRGCILSDISDTGARIDVDTADELPNRFVLLLSGNGSPQRHCRVVWRQPTQVGVNF 243
            SR+   R  A+   D  A   C++ D S+TGA+I+V+T D +PN F L+++    P R C VVWR+  ++GV F
Sbjct:    9 SRKDAFRIGALSFGDRQADIDCLVWDQSETGAQIEVETPDAIPNEFTLVMTAYAKP-RACTVVWRRERKLGVAF 81          
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Match: UPI001EDEE03F (PilZ domain-containing protein n=1 Tax=Methylobacterium marchantiae TaxID=600331 RepID=UPI001EDEE03F)

HSP 1 Score: 59.7 bits (143), Expect = 9.000e-10
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   22 SRRRPMRYHAVLVLDGDAQRGCILSDISDTGARIDVDTADELPNRFVLLLSGNGSPQRHCRVVWRQPTQVGVNF 243
            SR+   R  A+   D  A   C++ D S+TGA+I+V+T D +P++FVL+++    P R C VVWR+  ++GV F
Sbjct:    9 SRKDAFRVGALSFGDRQADIDCLVWDHSETGAQIEVETPDAVPDQFVLVMTAYAKP-RSCTVVWRRERKLGVAF 81          
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Match: A0A257KPC6_9BRAD (Pilus assembly protein PilZ n=1 Tax=Bradyrhizobiaceae bacterium PARB1 TaxID=2015576 RepID=A0A257KPC6_9BRAD)

HSP 1 Score: 59.7 bits (143), Expect = 1.560e-9
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   52 VLVLDGDAQRGCILSDISDTGARIDVDTADELPN--RFVLLLSGNGSPQRHCRVVWRQPTQVGVNF 243
            ++ +DG  +R CIL D+S+TGA++ V+T+ E  N   F LLLS  G   R C + W    Q+GVNF
Sbjct:   20 MMGIDGTWRRACILEDVSETGAKLTVETSVEGLNLKEFFLLLSSTGLAYRRCELGWVNGDQIGVNF 85          
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Match: UPI002012232E (PilZ domain-containing protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI002012232E)

HSP 1 Score: 57.8 bits (138), Expect = 5.250e-9
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   13 KRRSRRRPMRYHAVLVLDGD-AQRGCILSDISDTGARIDVDTADELPNRFVLLLSGNGSPQRHCRVVWRQPTQVGVNF 243
            K+R+ RR +     + + GD A R CI+ DISD+GA++ +D       +F L LS    P R CRV WR+ TQ+GV F
Sbjct:    7 KQRAPRRRIDREGWITMPGDFAARRCIVIDISDSGAKLQIDDPRFTRTQFELRLSRT-DPGRRCRVTWRRGTQIGVAF 83          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13263.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A345ZQK5_9HYPH1.630e-2957.89PilZ domain-containing protein n=1 Tax=Pseudolabry... [more]
A0A1Q4DFF8_9HYPH8.940e-2348.81PilZ domain-containing protein n=1 Tax=Rhizobiales... [more]
A0A833GFT6_9HYPH5.720e-1744.44PilZ domain-containing protein n=1 Tax=Pseudorhodo... [more]
A0A1W6ZXK2_9HYPH3.680e-1246.15PilZ domain-containing protein n=1 Tax=Pseudorhodo... [more]
A0A6S6QW69_9HYPH2.900e-1143.59PilZ domain-containing protein n=1 Tax=Terrihabita... [more]
A0A127EZL0_9HYPH2.960e-1041.10PilZ domain-containing protein n=1 Tax=Rhodoplanes... [more]
UPI000378F1419.000e-1040.54hypothetical protein n=1 Tax=Methylobacterium sp. ... [more]
UPI001EDEE03F9.000e-1040.54PilZ domain-containing protein n=1 Tax=Methylobact... [more]
A0A257KPC6_9BRAD1.560e-943.94Pilus assembly protein PilZ n=1 Tax=Bradyrhizobiac... [more]
UPI002012232E5.250e-942.31PilZ domain-containing protein n=2 Tax=unclassifie... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13263contigP-wetherbeei_contig13263:365..649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1037409.BJ6T_54070
Preferred nameMA20_30380
PFAMsPilZ
Model size285
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.32e-11
EggNOG OGs29CEH@1|root,2ZZCY@2|Bacteria,1MZYP@1224|Proteobacteria,2UDYN@28211|Alphaproteobacteria,3JZUG@41294|Bradyrhizobiaceae
DescriptionPilZ domain
Cds size285
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185979.2860467-CDS-P-wetherbeei_contig13263:364..6491683185979.2860467-CDS-P-wetherbeei_contig13263:364..649Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13263 365..649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13263.1.1prot_P-wetherbeei_contig13263.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13263 365..649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13263.1.1

>prot_P-wetherbeei_contig13263.1.1 ID=prot_P-wetherbeei_contig13263.1.1|Name=mRNA_P-wetherbeei_contig13263.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
MQRDKRRSRRRPMRYHAVLVLDGDAQRGCILSDISDTGARIDVDTADELP
NRFVLLLSGNGSPQRHCRVVWRQPTQVGVNFDGRLPADERTGLVP
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mRNA from alignment at P-wetherbeei_contig13263:365..649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13263.1.1 ID=mRNA_P-wetherbeei_contig13263.1.1|Name=mRNA_P-wetherbeei_contig13263.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig13263:365..649+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGAGAGACAAACGACGATCGCGCCGCCGGCCCATGCGCTACCACGC CGTGCTGGTCCTGGACGGTGATGCGCAGCGCGGCTGTATTCTCTCGGACA TCTCCGATACCGGCGCACGCATCGACGTCGATACCGCTGACGAACTGCCC AACCGCTTCGTGCTGCTGCTGTCGGGAAACGGCTCGCCGCAACGCCATTG CCGCGTGGTCTGGCGTCAGCCGACGCAGGTCGGCGTCAATTTCGACGGCC GGCTGCCGGCGGACGAACGCACCGGCCTAGTGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13263:365..649+

>mRNA_P-wetherbeei_contig13263.1.1 ID=mRNA_P-wetherbeei_contig13263.1.1|Name=mRNA_P-wetherbeei_contig13263.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig13263:365..649+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGAGAGACAAACGACGATCGCGCCGCCGGCCCATGCGCTACCACGC
CGTGCTGGTCCTGGACGGTGATGCGCAGCGCGGCTGTATTCTCTCGGACA
TCTCCGATACCGGCGCACGCATCGACGTCGATACCGCTGACGAACTGCCC
AACCGCTTCGTGCTGCTGCTGTCGGGAAACGGCTCGCCGCAACGCCATTG
CCGCGTGGTCTGGCGTCAGCCGACGCAGGTCGGCGTCAATTTCGACGGCC
GGCTGCCGGCGGACGAACGCACCGGCCTAGTGCCG
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