mRNA_P-wetherbeei_contig1296.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1296.3.1
Unique NamemRNA_P-wetherbeei_contig1296.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Match: D7FNH1_ECTSI (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH1_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 6.110e-92
Identity = 148/234 (63.25%), Postives = 191/234 (81.62%), Query Frame = 2
Query:    2 ERAQPADRKKFGLLEKHKDYVLRARDFGRKRDRMNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTIVADPALKDDVVRLLKTQDVAYVNMKRAADEKKVERMKETLHGITETPRNKHTIFVDSEKKAASFDPAEHFDTVPALAYRAFNRPRRATLETAAVTGAATRQELKKVFKKRDSAYRAATERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAANGQPAVFKWKRERAK 703
            ERAQPA R+K GLLEKHKDYVLRAR++G+KRDRM +L+LKAAM+NPDEFYFAM++ KT+ GVH +     L  DVV+LLKTQD+ YV+  R+ADE+K  +++E+LH +   PRNKHTIF DSEK+A  FD A+HFDTVP LA RAFNRPR+ TLE A VTGA  R++LKKV KKRD++Y    +R+ERA K++KA  HL+AQR VMNSKGTK+KV++A +G+PAV++WK+ER++
Sbjct:   15 ERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFFDSEKEAKEFDVAKHFDTVPELADRAFNRPRKDTLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 248          
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Match: A0A836CK24_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK24_9STRA)

HSP 1 Score: 260 bits (665), Expect = 5.510e-82
Identity = 137/234 (58.55%), Postives = 173/234 (73.93%), Query Frame = 2
Query:    2 ERAQPADRKKFGLLEKHKDYVLRARDFGRKRDRMNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTIVADPALKDDVVRLLKTQDVAYVNMKRAADEKKVERMKETLHGITETPRNKHTIFVDSEKKAASFDPAEHFDTVPALAYRAFNRPRRATLETAAVTGAATRQELKKVFKKRDSAYRAATERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAANGQPAVFKWKRERAK 703
            ERAQPA R KFGLLEKH DYVLRARD+  KRDR+N+LRLKA++RNPDEFYF M+K KTKEGVH +    +L  +   +LKTQD+AY++MKRA D KK ER+K  LH +   P+N HT+FV ++++  +FD AE+FDT P LA R FNRPR ATLE+  V GA +R +LKK  K+RD+AY+    R ERA K+ +A  HL AQR +M ++GT  KVK A  GQP V+KWKR+RAK
Sbjct:   15 ERAQPASRSKFGLLEKHSDYVLRARDYNAKRDRLNALRLKASLRNPDEFYFGMHKAKTKEGVHQVEGSSSLDHETAHMLKTQDMAYIHMKRAVDIKKAERLKAGLHMLDAPPQNTHTVFVKNKRQRRAFDAAEYFDTAPELAGRTFNRPRMATLESKQVLGAESRADLKKALKQRDAAYQEVEAREERARKMTRAAAHLAAQRALMTARGTVTKVKGAEKGQPPVYKWKRQRAK 248          
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Match: A0A4D9DA46_9STRA (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA46_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.140e-73
Identity = 137/236 (58.05%), Postives = 171/236 (72.46%), Query Frame = 2
Query:    2 ERAQPADRKKFGLLEKHKDYVLRARDFGRKRDRMNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTI-VADPALKDDVVRLLKTQDVAYVNMKRAADEKKVERMKETLHGITETPRNKHTIFVDSEKKAASFDPAEHFDTVPALAYRAFNRPRRATLET-AAVTGAATRQELKKVFKKRDSAYRAATERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAANGQPAVFKWKRERAK 703
            ER+QPA RKKFGLLEKHKDYV RA D+ RK   + SLR KAA RNPDEFYFAM K +TKEGVH +  A+ +L  D + LLKTQD+ YV MKRA D KK E+++  LH +TE   NKHT+FVD+E +  +FDPA+HF T PAL  RAFNRP+  TLET  AV G A   ELKKV K R+ AY    ER++R+   ++ +EH+Q ++ VM  KG K+KV++A +G+PAVFKWKRER K
Sbjct:   17 ERSQPAARKKFGLLEKHKDYVQRANDYKRKSKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVTMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEAEVETFDPAKHFGTDPALVTRAFNRPKLETLETPGAVLGVANVGELKKVRKAREKAYTELGERLKRSLSFKEVLEHMQVEKNVMG-KGRKRKVQEAEDGKPAVFKWKRERRK 251          
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Match: A0A5D6XJY8_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJY8_9STRA)

HSP 1 Score: 217 bits (553), Expect = 3.910e-65
Identity = 124/238 (52.10%), Postives = 164/238 (68.91%), Query Frame = 2
Query:    2 ERAQPADRKKFGLLEKHKDYVLRARDFGRKRDRMNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTIVAD------PALKDDVVRLLKTQDVAYVNMKRAADEKKVERMKETLHGITETPRNKHTIFVDSEKKAASFDPAEHFDTVPALAYRAFNRPRRATLETAAVTGAATRQELKKVFKKRDSAYRAATERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAANGQPAVFKWKRER 697
            ER QP +RKK GLLEKHKDYV RARD+  K+DR+ +++LKAA RNPDEFYF MN T+T+ GVH  V+D       AL  D +++LKTQDVAY+++KRA D +K E++   LH I     NKH +FVDSE + A FD A HFDT P LA RAFNR R   L+T A+   ++ +E+KK  ++RD  YR  ++R+ERAA L +    L  +R V  +KG K K+K A NGQPAV++WK++R
Sbjct:   14 ERGQPQERKKLGLLEKHKDYVKRARDYNSKQDRLRTMQLKAAFRNPDEFYFRMNATRTEGGVH--VSDNNRLDGKALTADALKVLKTQDVAYLHLKRAVDMRKAEKLNAGLHFIDAPTANKHVVFVDSEAQLAKFDVAAHFDTAPELADRAFNRVRMDALKTLALPAVSSAKEIKKRNRERDGVYRELSDRLERAATLDRMRAKLDLERKVQ-AKGKKMKIKDAENGQPAVYRWKKQR 248          
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Match: A0A8K1CCZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCZ2_PYTOL)

HSP 1 Score: 210 bits (535), Expect = 1.810e-62
Identity = 114/236 (48.31%), Postives = 165/236 (69.92%), Query Frame = 2
Query:    2 ERAQPADRKKFGLLEKHKDYVLRARDFGRKRDRMNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTIVADPA--LKDDVVRLLKTQDVAYVNMKRAADEKKVERMKETLHGITETPRNKHTIFVDSEKKAASFDPAEHFDTVPALAYRAFNRPRRATLETAAVTGAATRQELKKVFKKRDSAYRAATERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAANGQPAVFKWKRERAK 703
            ER Q  +RKK GLLEKHKDYVLRARD+ +K+DR+ +++LKAA RNPDEFYF MN T+T++GVH    + +  L  + +++LKTQD+AY++MKRA D +K E++ + LH I     NKHT+FVDS +   +FD A HFDT P LA RAFNR R+ TL+T  +     +++L+ + K+RD+ YR   +R+ RA K+++  + L  +R V  +KG K+KV+   + +P V+KWK+ER K
Sbjct:   14 ERGQLQERKKLGLLEKHKDYVLRARDYNKKQDRLRTMKLKAAFRNPDEFYFKMNTTRTEDGVHVSENNHSEKLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLTQGLHFIDAPKNNKHTVFVDSSEDLNTFDVATHFDTAPELADRAFNRLRKETLKTTTIQATTDKKQLRALTKERDAVYRELNDRLIRATKIQQMSDRLDLERKVQ-AKGKKRKVQDGDSSRPPVYKWKKERQK 248          
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Match: K3WAT9_GLOUD (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAT9_GLOUD)

HSP 1 Score: 206 bits (523), Expect = 1.200e-60
Identity = 115/237 (48.52%), Postives = 165/237 (69.62%), Query Frame = 2
Query:    2 ERAQPADRKKFGLLEKHKDYVLRARDFGRKRDRMNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTIVAD--PALKDDVVRLLKTQDVAYVNMKRAADEKKVERMKETLHGITETPR-NKHTIFVDSEKKAASFDPAEHFDTVPALAYRAFNRPRRATLETAAVTGAATRQELKKVFKKRDSAYRAATERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAANGQPAVFKWKRERAK 703
            ER Q  +RKK GLLEKHKDYV RARD+ +K+D + +L +KAA RNPDEFYF MN T+T++GVH    +    L  + +++LKTQD+AY++MKRA D +K E++ E LH I    + NKH +FVDS+ +  SFD A+HFDTVP +A RAFNR R+ TL+T ++     ++ LKK+  +RD+ YR   +R++RA+ + +    L  +R V  +KG K K+K A +GQPAV++WK++R K
Sbjct:   15 ERGQLRERKKLGLLEKHKDYVKRARDYNKKQDHLKALAVKAAFRNPDEFYFRMNSTRTEDGVHVSTHNHHKQLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLNEGLHFIDAAGKDNKHVVFVDSKDEVESFDVAKHFDTVPEIADRAFNRLRKDTLKTVSLPAVQDKKTLKKLGIERDAVYRELNDRLQRASTIDRMRAKLDLERKVQ-AKGKKMKIKDAEDGQPAVYRWKKQRQK 250          
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Match: A0A7S2W8G3_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8G3_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.880e-58
Identity = 118/247 (47.77%), Postives = 163/247 (65.99%), Query Frame = 2
Query:    2 ERAQPADRKKFGLLEKHKDYVLRARDFGRKRDRMNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTIV----ADPALKDDVVRLLKTQDVAYVNMKRAADEKKVERMKETLHGITETPRNKHTIFVDSEKKAASFDPAEHFDTVPALAYRAFNRPRRATLE---------TAAVTGAATRQELKKVFKKRDSAYRAATERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAANGQPAVFKWKRERAK 703
            ER+Q A R   GLLEK KDYV RARDF RK  ++ +LR KA  RNPDEFYF M   KTK+GVH       AD    DD++ L+K+QD+ Y++MK+A D++K ER++  LH + + P N+HT+F+D  K   +FD AEHFDT+P LA RAFNRPRR   E         T  +T  +++Q  KK+ K +D AY    ER+ER+ KLRK ++  + ++ VM  KG K+KV+ +++G P V+KWKR+RA+
Sbjct:   15 ERSQVASRAHLGLLEKKKDYVERARDFQRKTGKIKNLRKKARERNPDEFYFGMVNQKTKDGVHVAERNDGADKLSHDDIL-LMKSQDLGYLSMKKAVDDRKSERLQSGLHMLLDKPLNQHTVFLDKSKDVETFDAAEHFDTMPELAGRAFNRPRRKAFEADKEGSIASTPVMTSTSSKQ-YKKIMKSKDKAYEDLAERLERSEKLRKLIQRKEVEKKVMG-KGRKRKVEGSSSGAPPVYKWKRKRAR 258          
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Match: A0A2V0P5L3_9CHLO (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5L3_9CHLO)

HSP 1 Score: 200 bits (508), Expect = 2.140e-58
Identity = 117/234 (50.00%), Postives = 151/234 (64.53%), Query Frame = 2
Query:    2 ERAQPADRKKFGLLEKHKDYVLRARDFGRKRDRMNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTIVADPALK--DDVVRLLKTQDVAYVNMKRAADEKKVERMKETLHGITETPRNKHTIFVDSEKKAASFDPAEHFDTVPALAYRAFNRPRRATLETAAVTGAATRQELKKVFKKRDSAYRAATERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAANGQPAVFKWKRER 697
            ERAQPA R K+GLLEK KDY  RARDF RK   + +L+ KA  RNPDEFYF+M +  T+ GVH +    A K     + L++TQDV Y+  K  ++ KK+ERMKETLH I     +KH +F+DS+ +A  FDPAE FDT   L  RA+NRPRRA LE+ A   A   +   K  +++ +AY+  ++R+ER A L K  E L+A + VM  +G KKKVK A    PAVFKWKRER
Sbjct:   16 ERAQPAARSKYGLLEKKKDYRQRARDFHRKEKAIKALQRKAEERNPDEFYFSMERASTRGGVHVVPTAEANKYSQQELALMRTQDVGYLRSKATSEAKKIERMKETLHFIGAPRASKHKVFLDSKAEARDFDPAEFFDTPRELLGRAYNRPRRAQLESEAAVSAPEPKAAAKAERRKHAAYKELSQRVERQAALAKLAERLEAGKAVMTGRGRKKKVKGATADAPAVFKWKRER 249          
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Match: D0NVW8_PHYIT (U3 small nucleolar RNA-associated protein 11 n=14 Tax=Phytophthora TaxID=4783 RepID=D0NVW8_PHYIT)

HSP 1 Score: 197 bits (502), Expect = 1.630e-57
Identity = 117/237 (49.37%), Postives = 157/237 (66.24%), Query Frame = 2
Query:    2 ERAQPADRKKFGLLEKHKDYVLRARDFGRKRDRMNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTIVAD--PALKDDVVRLLKTQDVAYVNMKRAADEKKVERMKETLHGITETPRNKHTIFVDSEKKAASFDPAEHFDTVPALAYRAFNRPRRATLETAAVTGAATRQELK-KVFKKRDSAYRAATERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAANGQPAVFKWKRERAK 703
            ER Q  +R+K GLLEKHKDYV RARD+  K+ R+ +L+LKAA+RNPDEFY  M  TKT+ GVH    +   +++ + +R LKTQD+AY++MKRA D +K ER+   LH +     N HT+FVD E++  SFD AEHFDT P L  RAFNR R+  LETA +   A   + K K+  ++D+ YR   +R+ RA KL +    L  +R V  +KG KKKVK A NG PAV++WK++R K
Sbjct:   15 ERGQLRERRKLGLLEKHKDYVKRARDYNSKQKRLKTLQLKAALRNPDEFYHRMRGTKTEGGVHVSTHNHIKSVETEALRTLKTQDLAYLHMKRAVDLRKAERLNRGLHFVDAPKNNNHTVFVDDEEQVDSFDVAEHFDTAPELVDRAFNRIRKRDLETAELPDLAANPKQKYKMQVEKDAMYRELRDRLARANKLGQMSAKLDLERKVQ-AKGRKKKVKAAENGMPAVYRWKQQRQK 250          
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Match: A4RYN6_OSTLU (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RYN6_OSTLU)

HSP 1 Score: 197 bits (502), Expect = 2.640e-57
Identity = 122/251 (48.61%), Postives = 161/251 (64.14%), Query Frame = 2
Query:    2 ERAQPADRKKFGLLEKHKDYVLRARDFGRKRDRMNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTIVADPALK--DDVVRLLKTQDVAYVNMKRAADEKKVERMKETLHGITETPRNKHTIFVDSEKKAASFDPAEHFDTVPALAYRAFNRPRRATLETA-AVTGA------------ATRQELKKVFKKRDSAYRAATERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAA--NGQPAVFKWKRERAK 703
            ER+Q ++RK+FGLLEK KDYVLRARD+ +K D +N+L+ KAA RNPDEFYFAM K KT +GVH   +    K  ++ +R++KTQDV YV MK A + KKVE+MK  LHGI    + KHT+FVD+E++A SFD AEHFDTVP L  R FNRPRRA LE   AV G             A+   +K++ + +  AY+  T   ERA KL+     +  Q+ + +SKG K K+ K      + + FKWK+ER K
Sbjct:   16 ERSQLSERKRFGLLEKKKDYVLRARDYHKKEDAINALKRKAAYRNPDEFYFAMQKAKTDDGVHVARSTEQNKYTEEELRVMKTQDVKYVQMKAAIEGKKVEKMKRNLHGIGVPVKRKHTVFVDTEEEAKSFDAAEHFDTVPELVNRTFNRPRRAQLEDEDAVVGVRSDGAAGSSGTGASEISMKRLTRMQKGAYKTYTAYDERAKKLKDMSAEMAMQKVISHSKGHKVKITKTNPDGTKTSYFKWKQERQK 266          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1296.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH1_ECTSI6.110e-9263.25U3 small nucleolar RNA-associated protein 11 n=2 T... [more]
A0A836CK24_9STRA5.510e-8258.55U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A4D9DA46_9STRA1.140e-7358.05U3 small nucleolar RNA-associated protein 11 n=2 T... [more]
A0A5D6XJY8_9STRA3.910e-6552.10U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A8K1CCZ2_PYTOL1.810e-6248.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WAT9_GLOUD1.200e-6048.52U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A7S2W8G3_9STRA1.880e-5847.77U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A2V0P5L3_9CHLO2.140e-5850.00U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
D0NVW8_PHYIT1.630e-5749.37U3 small nucleolar RNA-associated protein 11 n=14 ... [more]
A4RYN6_OSTLU2.640e-5748.61U3 small nucleolar RNA-associated protein 11 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1296contigP-wetherbeei_contig1296:5385..7461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNH1
Preferred nameUTP11L
PFAMsUtp11
Model size1214
Max annot lvl2759|Eukaryota
KEGG koko:K14685,ko:K14769
KEGG TC2.A.100.1
KEGG Pathwayko04216,ko04978,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons5
Evalue6.41e-75
EggNOG OGsCOG5223@1|root,KOG3237@2759|Eukaryota
DescriptionrRNA processing
Cds size606
COG categoryL
BRITEko00000,ko00001,ko02000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1296.3.1prot_P-wetherbeei_contig1296.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1296 6019..7361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.214277-UTR-P-wetherbeei_contig1296:5384..57661683185968.214277-UTR-P-wetherbeei_contig1296:5384..5766Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1296 5385..5766 -
1683185968.226172-UTR-P-wetherbeei_contig1296:5892..60181683185968.226172-UTR-P-wetherbeei_contig1296:5892..6018Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1296 5893..6018 -
1683185968.2822146-UTR-P-wetherbeei_contig1296:7361..74611683185968.2822146-UTR-P-wetherbeei_contig1296:7361..7461Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1296 7362..7461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.2348459-CDS-P-wetherbeei_contig1296:6018..61591683185968.2348459-CDS-P-wetherbeei_contig1296:6018..6159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1296 6019..6159 -
1683185968.2445097-CDS-P-wetherbeei_contig1296:6503..66951683185968.2445097-CDS-P-wetherbeei_contig1296:6503..6695Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1296 6504..6695 -
1683185968.2541857-CDS-P-wetherbeei_contig1296:6875..69591683185968.2541857-CDS-P-wetherbeei_contig1296:6875..6959Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1296 6876..6959 -
1683185968.272127-CDS-P-wetherbeei_contig1296:7172..73611683185968.272127-CDS-P-wetherbeei_contig1296:7172..7361Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1296 7173..7361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1296.3.1

>prot_P-wetherbeei_contig1296.3.1 ID=prot_P-wetherbeei_contig1296.3.1|Name=mRNA_P-wetherbeei_contig1296.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp
MNSLRLKAAMRNPDEFYFAMNKTKTKEGVHTIVADPALKDDVVRLLKTQD
VAYVNMKRAADEKKVERMKETLHGITETPRNKHTIFVDSEKKAASFDPAE
HFDTVPALAYRAFNRPRRATLETAAVTGAATRQELKKVFKKRDSAYRAAT
ERIERAAKLRKAMEHLQAQRTVMNSKGTKKKVKKAANGQPAVFKWKRERA
K*
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mRNA from alignment at P-wetherbeei_contig1296:5385..7461-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1296.3.1 ID=mRNA_P-wetherbeei_contig1296.3.1|Name=mRNA_P-wetherbeei_contig1296.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2077bp|location=Sequence derived from alignment at P-wetherbeei_contig1296:5385..7461- (Phaeothamnion wetherbeei SAG_119_79)
AGAGCGGGCGCAGCCGGCCGACCGGAAGAAGTTTGGGCTCCTGGAGAAGC ACAAGGACTATGTCCTGCGTGCTCGCGACTTTGGGCGGAAGAGGGACCGG ATGAACAGCCTCCGACTCAAGGCGGCCATGCGGAATCCGGACGAGTTCTA CTTTGCCATGAACAAGACCAAGACGAAGGAAGGGGTGCACACAATCGTGG CCGATCCCGCGCTGAAGGACGATGTCGTGAGGCTCTTGAAGACGCAGGAC GTCGCCTACGTAAACATGAAACGGGCTGCCGACGAGAAGGTGAGGCGGTA AATGTACCATGTAATTGATCGAAGCTTTGCGGAAGTTGAGAAGGTTGGAG GGGATGGTGCTTTCCAAAATGACGAACTTCTAGTATGCAGCGAACTCTCT CCACCTCTCGATTCTCGTTCGTGAAAAAGTGCTGACCAAAAGTGAAGTCT CACGGGAAAGAGCGCTTTGCTTTGCTTCTCTCTTCTCATTGCGCGTTCAC AGAAAGTGGAACGGATGAAGGAAACGCTGCACGGCATCACTGAAACTCCA CGGAACAAGCACACCATCTTCGTCGACTCTGAAAAGGTGCGGGCTGGGAC AAAACGTTGTCATTTATAAGAAAATGGGCTGTGCAGAATTGAGGAGAGGA TTTGTGCTTTCCGACAGCAGACCATACCACCTTTGCGCGCGTGTTGTTGA GTCAATTCAATGGACTCATTTATAGGCAGAACCGGAATCCTCTTGTTGTC GTCATCGTTTGCGCAGAAAGCGGCATCTTTCGACCCGGCGGAGCACTTCG ACACGGTGCCGGCGCTGGCGTACCGCGCATTCAACCGGCCGCGGCGGGCG ACACTGGAGACGGCCGCAGTGACGGGGGCGGCGACGCGGCAGGAGCTGAA AAAGGTCTTCAAGAAGCGCGACTCGGCCTACCGGGCTGCGACAGAGCGGA TTGAACGGGTGAGGGCGAAGGATTGTGTTTTTGCTGCCAGCCCAATCTCT GTTTTGGCGCGCTTTCTTTTGATCCGTTATTGTCGGATTCTCCCATCAAA ACGTTTCGTGGATGTGTTTTTGGATCGCAACGTGATGCATGGCGAGTGCC TTACTGGCAGTAGCGACTCCGGTGGCATAGTACAACTTGGATAAGACGGG GGTGCGACGAATTGTTTGGTTGAAGCATCCGATGTATCGTTAGATGGCTG CCGTACTTCTGCCCACGCCATCGCCCCGTCATACCAAACCTGAATTCCAC TCGTTTGTCTCGACACGTTTTCCATTGTTACCGCCGTCCATGTTTCCAAC AGGCCGCGAAGCTGCGGAAAGCCATGGAGCATCTCCAAGCGCAGCGCACC GTCATGAATAGCAAGGGGACCAAGAAGAAGGTCAAGAAGGCCGCCAACGG TCAGCCCGCCGTCTTCAAGTGGAAGAGGGAGCGCGCAAAATAGACTGCAG AAATGTGAAGAAATACACCATTCCTGAAGCGATATTCTCTCCGGCTTTCG CAGTCTCGCTGAGTCTCCGTTTCTCGGTTTCGACCTCGGAGTTTGCGGCG GCAGTGGCATCCATTTGGCTGACACCAGCATGAGAAGTTCACGTGTCGAC TAGCGGCGCGCCACGACGAGCGCCCGGCCTCTTATTTTCGGATTGCCCGC TTGTTTCTTATCCTTTCCATCGCCGAACCTTTTGATAGCTGCGTGCGAAC AACCTCGGACTTCCAGAATGTCATTCTGGGGGCACTAGTCGCGATGCCCT GCCTCTGTCAGCATCGGCCAAAAGTGTGCCGGCGGCGCCAGAGCCGTAAT TTGACCGTGGCACGCACCCTTTGCTCGCAGTCTGCCTGGAGGTTACACTG GGGAGACGACTTCTTTCGAGACATGGCGATGGCGGTCTGCGAGCTCTTTG ACGTGGTGCAGCCGGACAAAGCCATCTTCAGGTAGGAGGGCTACCTGCAG GTTTTTACATGGTCGAGTTGCATTTTCCTGTTGTTGCGGGTGTTGTTGGG TTCGTGATCGTTCTCGGGTTCTTGCTGTGTTCCCTTTGGTGCAGAGCCAA ATTTAGTACATTCCTTGATGCCAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1296:5385..7461-

>mRNA_P-wetherbeei_contig1296.3.1 ID=mRNA_P-wetherbeei_contig1296.3.1|Name=mRNA_P-wetherbeei_contig1296.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig1296:5385..7461- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAGCCTCCGACTCAAGGCGGCCATGCGGAATCCGGACGAGTTCTA
CTTTGCCATGAACAAGACCAAGACGAAGGAAGGGGTGCACACAATCGTGG
CCGATCCCGCGCTGAAGGACGATGTCGTGAGGCTCTTGAAGACGCAGGAC
GTCGCCTACGTAAACATGAAACGGGCTGCCGACGAGAAGAAAGTGGAACG
GATGAAGGAAACGCTGCACGGCATCACTGAAACTCCACGGAACAAGCACA
CCATCTTCGTCGACTCTGAAAAGAAAGCGGCATCTTTCGACCCGGCGGAG
CACTTCGACACGGTGCCGGCGCTGGCGTACCGCGCATTCAACCGGCCGCG
GCGGGCGACACTGGAGACGGCCGCAGTGACGGGGGCGGCGACGCGGCAGG
AGCTGAAAAAGGTCTTCAAGAAGCGCGACTCGGCCTACCGGGCTGCGACA
GAGCGGATTGAACGGGCCGCGAAGCTGCGGAAAGCCATGGAGCATCTCCA
AGCGCAGCGCACCGTCATGAATAGCAAGGGGACCAAGAAGAAGGTCAAGA
AGGCCGCCAACGGTCAGCCCGCCGTCTTCAAGTGGAAGAGGGAGCGCGCA
AAATAG
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