mRNA_P-wetherbeei_contig12920.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI) HSP 1 Score: 353 bits (906), Expect = 1.350e-111 Identity = 176/277 (63.54%), Postives = 213/277 (76.90%), Query Frame = 1
Query: 7 RPTTQLTFKPLYGCMEGSGG-GPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALT-----QRHGGPKR--RAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRLGGY 813
R ++ F PLYGC EG+ G P+ S+LE+GGV ILLDCGWDIHFD A+LEPLR+V+ R+DLVLISH DLEHLGGLPYA G+LG+ A VY TLPV KMGQM VYDA +SR EG+F LDDVD AFA+FK LKFSQHL +GRG G+T+TPYAAG +IG A WR++W++EDND+VYA +YN+ ERHL+ SAL G + RPSVLI+DAHNALT ++ KR R EL+ +M TVRGGGNVL+PTD +GRVLELL LL+ YW + RLG Y
Sbjct: 122 RSKGKVVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHERHLRASAL-GTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQKHRLGSY 397
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA) HSP 1 Score: 348 bits (893), Expect = 6.170e-111 Identity = 169/272 (62.13%), Postives = 211/272 (77.57%), Query Frame = 1
Query: 16 TQLTFKPLYGCME--GSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDA--VLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLA--GRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRLGGY 813
T +TF PLYGC + G G GP+CSLLE+G V ILLDCGWDI FD ++L PL V+ RVDLVLISH+DLEHLGGLPYAVG+LGL APV+ TLP KMGQM VYDA + S E G F +LDD D AF +F+PLK+SQHLR + GRG G+T+TPYAAGH+IGG+ WRI W+++DND+VYAVSYNH+ E HL G A+E + RPS++I+DAH LT + P++RA++L E++ ATVR GGNVL+P D +GRVLELL LLD +WT+ +LG Y
Sbjct: 46 TDVTFTPLYGCFDDTGRGAGPVCSLLEVGDVTILLDCGWDIDFDESLLAPLASVVSRVDLVLISHADLEHLGGLPYAVGKLGLKAPVFATLPTLKMGQMTVYDAHQMRSLEANGTFKAFTLDDADAAFERFQPLKYSQHLRFSEGGRGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREEHLNGGAVE-TLSRPSIMITDAHQVLTMQPKPPRKRASDLTEMVTATVRKGGNVLLPCDTAGRVLELLLLLDHHWTRNKLGSY 316
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A2P6VIQ6_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VIQ6_9CHLO) HSP 1 Score: 284 bits (726), Expect = 6.190e-87 Identity = 145/261 (55.56%), Postives = 184/261 (70.50%), Query Frame = 1
Query: 28 FKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAE--LLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRL 804
F PL G GG PL LLE+ G LLDCGW +D+A L P+ VL RVD VL+SHSD +HLG LPY VGR GL APVY T PVHKMGQM +YD LSR+ + +FD +LDDVD AFA+ PL++ Q+L L+G+G G+T+TP+AAGH++GGA WRI W ED VYAV YNH+ ERHL G+ALE RP++LISDA NAL P++ E LLE +M T+RG G+VL+P D +GR+LEL+ LL+ +W++ RL
Sbjct: 14 FTPLLGV---GGGQPLSYLLELAGFAFLLDCGWSDAYDVAQLAPVLAVLPRVDAVLLSHSDPQHLGALPYLVGRAGLAAPVYATSPVHKMGQMAMYDQYLSRQAQSEFDTFNLDDVDAAFARVTPLRYQQNLALSGKGVGITLTPFAAGHLLGGAVWRIRWGGED--FVYAVDYNHRKERHLNGTALESAFQRPALLISDALNAL---QSAPEKSTKEKDLLEAVMTTLRGDGSVLLPIDTAGRLLELVLLLEKHWSEHRL 266
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: C1FDL7_MICCC (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FDL7_MICCC) HSP 1 Score: 280 bits (717), Expect = 2.030e-85 Identity = 141/266 (53.01%), Postives = 186/266 (69.92%), Query Frame = 1
Query: 16 TQLTFKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRLGGY 813
T++ F PLYG ++G G P C +L++ G +ILLDCGW+ FD+ +LEPL V VD VLISH D EHLG LPYA G+LG+ VY TLPVHKMG M +YD LSR DF V +LDD+D AF+ F P++++Q L G G G+T+TPYAAGH++GGA W++ E +DVVYAV++NH+ E+HL G+ LE + RP+VLI+DA NA +R K R +L+E I+ TVR GNVLIP D +GRVLELL +L+ W+Q +L Y
Sbjct: 6 TRIKFSPLYG-VQGIGEDPFCYVLDLDGFKILLDCGWNDSFDVNLLEPLAKVAAEVDAVLISHPDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSRNANEDFRVFTLDDIDTAFSAFVPVRYAQRSALVGHGAGITITPYAAGHMLGGALWKV--HKETDDVVYAVNFNHRREKHLNGTVLESIK-RPAVLITDASNA--RRLPPSKTRENDLIEAILRTVRQDGNVLIPIDPAGRVLELLLVLEERWSQKQLAAY 265
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A2P4YIS9_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YIS9_9STRA) HSP 1 Score: 265 bits (676), Expect = 2.020e-84 Identity = 136/263 (51.71%), Postives = 186/263 (70.72%), Query Frame = 1
Query: 22 LTFKPLYGCMEGSGGGPLCS-LLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSR-EQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRL 804
+TF PLYG + P C+ LLE+ V ILLDCGW +D+ +L+PL+ V+ R+DLVL+SH DL H+G LPYA+G+LGLNAPVY TLPVH+MGQ+ +YDA ++ + + DF + SLDDVD F +FK LK+S+ L L GEG+ +TP+ AGH+IGGA WRI E +D++YAV YNH+ E L+ + L+ RP++LI+D+ N L K R ++++ I+ TVR GGNVLIPTD+SGRVLEL+ +LD YW Q +L
Sbjct: 4 ITFTPLYGVHSSA---PCCAYLLEVDEVCILLDCGWTDEYDVELLKPLQRVVDRIDLVLVSHLDLAHMGALPYAMGKLGLNAPVYGTLPVHRMGQIALYDAFQAKTKHDSDFSLFSLDDVDLVFERFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIM--KETDDIIYAVDYNHRSEHVLQKTILDSFT-RPTLLITDSMN-LHAEQPKLKDRDSKIMMEILKTVRNGGNVLIPTDSSGRVLELMRVLDQYWIQNKL 259
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A2R6XNT6_MARPO (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XNT6_MARPO) HSP 1 Score: 272 bits (695), Expect = 1.040e-82 Identity = 142/268 (52.99%), Postives = 183/268 (68.28%), Query Frame = 1
Query: 1 MGRPTTQLTFKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRL 804
MG + Q+T PL G S PLC LLE+ G R LLDCGW FD+A L+PL V +D VL+S+ D HLG LPYAVG LGL A VYCTLPVH+MGQM +YD LSR +FD+ +LDDVD AF LK+SQH L G+GEG+T+TPYAAG ++GG W+IT +ED ++YAV +NH+ ERHL G+ L+ V RP+VLI+D++NAL + K+R AE L+V+M +R GGNVL+P + +GRVLEL+ LD W +L
Sbjct: 17 MGSSSVQIT--PLSGAHSES---PLCYLLEVDGFRFLLDCGWTDAFDVAQLQPLASVASTIDAVLLSYPDTMHLGALPYAVGNLGLTATVYCTLPVHRMGQMYMYDHYLSRRAVSNFDLFNLDDVDTAFGNSVQLKYSQHHLLQGKGEGITITPYAAGRLLGGTVWKITVDTED--IIYAVDFNHRKERHLNGTVLQSFV-RPAVLITDSYNALNNQPL-QKQRDAEFLDVVMKALRAGGNVLLPVETAGRVLELVLYLDKCWAGDKL 275
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A6B2L931_9EUKA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L931_9EUKA) HSP 1 Score: 259 bits (662), Expect = 3.700e-82 Identity = 133/260 (51.15%), Postives = 181/260 (69.62%), Query Frame = 1
Query: 13 TTQLTFKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWT 792
T+ + F PL G PLC LLEI RILLDCGW+ +D+ +L+PL+ V+G+++ VLISH DL HLG LPYAVG+LGL A + T+PV+KMGQM +YDA SR+ +F V +LDDVD AF F LK+SQ L+G+G L +TPYAAGH+IGG W+I + E ++++YAV YNH+ ERHL + LE + +P++LI+DA NAL + R + L+E I +T+R GGNVL+P D +GRVLELL +LD +W+
Sbjct: 2 TSIIKFSPLCGAYNED---PLCYLLEIDEYRILLDCGWNDDYDVQLLKPLKRVVGKINAVLISHPDLHHLGALPYAVGKLGLKAKIIGTIPVYKMGQMFMYDAYQSRQNSEEFTVFNLDDVDAAFDNFVQLKYSQRYTLSGKGIKLEITPYAAGHLIGGTIWKI--KRETDEIIYAVDYNHKKERHLSPTILETLT-QPTLLITDALNALNSQDSRGNRDSL-LIESITSTLRAGGNVLLPVDTAGRVLELLVILDQHWS 254
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: M4C192_HYAAE (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C192_HYAAE) HSP 1 Score: 265 bits (678), Expect = 1.680e-80 Identity = 135/263 (51.33%), Postives = 187/263 (71.10%), Query Frame = 1
Query: 22 LTFKPLYGCMEGSGGGPLCS-LLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSR-EQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRL 804
+TF PLYG + P C+ LLE+ V ILLDCGW +D+ +L+PL+ V+ R+DLVL+SH DL H+G LPYA+G+LGLNAP+Y TLPVH+MGQ+ +YDA ++ + E DF + SLDDVD F +F+ LK+S+ L L GEG+ +TP+ AGH+IGGA WRI E +D++YAV YNH+ E L+ + L+ RP++LI+D+ N L + K R ++++ I+ TVR GGNVLIPTD+SGRVLEL+ +LD YW Q +L
Sbjct: 4 ITFTPLYGVHSSA---PCCAYLLEVDDVCILLDCGWTDEYDVEILKPLQRVVDRIDLVLVSHLDLAHMGALPYAMGKLGLNAPIYGTLPVHRMGQIALYDAFQAKTKHESDFALFSLDDVDLVFEKFQQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIV--KETDDIIYAVDYNHRSEHVLQKTILDSFT-RPTLLITDSMN-LHREQPKLKDRDSKIMMEILKTVRNGGNVLIPTDSSGRVLELMRVLDQYWIQNKL 259
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A6U9RRA8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RRA8_9CHLO) HSP 1 Score: 266 bits (679), Expect = 1.810e-80 Identity = 133/262 (50.76%), Postives = 181/262 (69.08%), Query Frame = 1
Query: 28 FKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRLGGY 813
F PL G G P+C LLE+ LLDCGWD ++ L+ L + +VD VL+SH+D +HLG LPYAVG+LGL+ PVY TLPVHKMGQM +YD LS+ E +++ +L+DVDRAF F P++++Q + L G+GEG+T+TP+ AGH +GG WRIT +ED ++YAV YNH+ ERHL G+AL RP+VLI+DA+N LT++ K R L+ +M T+R GGNVLIP D + RVLELL +LD++W ++G Y
Sbjct: 18 FVPLCGV---HGQEPMCYLLEVDAFVFLLDCGWDDRTEVMDLKELEAHVEKVDAVLVSHADTKHLGALPYAVGKLGLDCPVYATLPVHKMGQMVLYDLYLSKRAEEEYETFNLNDVDRAFGMFNPMRYAQQINLTGKGEGITITPFPAGHSVGGTTWRITKEAED--ILYAVDYNHRKERHLNGAALH-TFNRPAVLITDAYNGLTEQTS-RKLRDRTLVAGVMQTLRSGGNVLIPVDTATRVLELLLVLDSHWEHQKIGLY 272
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: K3WHC0_GLOUD (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHC0_GLOUD) HSP 1 Score: 265 bits (677), Expect = 4.390e-80 Identity = 135/263 (51.33%), Postives = 186/263 (70.72%), Query Frame = 1
Query: 22 LTFKPLYGCMEGSGGGPLCS-LLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSR-EQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRL 804
+TF PLYG P C+ LLEI V ILLDCGW +D +L+PL+ V+ R+DLVLISH DL H+G LPYA+G+LGL AP+Y TLPVH+MGQ+ +YDA ++ + +GDF + +LDDVD F FK LK+S+ L L GEG+ +TP+ AGH+IGG+ WRI E +D++YAV YNH+ E L+ + L+ RP++LI+D+ N +++ K R ++++ I+ TVRGGGNVLIPTD+SGRVLEL+ +LD YW Q +L
Sbjct: 4 ITFTPLYGVHSSD---PCCAYLLEIDDVCILLDCGWTDQYDTELLKPLQRVIDRIDLVLISHLDLAHMGALPYAIGKLGLKAPIYGTLPVHRMGQIALYDAYQAKTKSDGDFALFTLDDVDAVFENFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGSLWRI--EKETDDIIYAVDYNHRSEHVLQKTILDSFT-RPTLLITDSMNIHSEQPK-LKDRDSKIMVEILKTVRGGGNVLIPTDSSGRVLELMRVLDQYWIQNKL 259 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12920.1.1 >prot_P-wetherbeei_contig12920.1.1 ID=prot_P-wetherbeei_contig12920.1.1|Name=mRNA_P-wetherbeei_contig12920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp MGRPTTQLTFKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVback to top mRNA from alignment at P-wetherbeei_contig12920:2..814- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12920.1.1 ID=mRNA_P-wetherbeei_contig12920.1.1|Name=mRNA_P-wetherbeei_contig12920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig12920:2..814- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12920:2..814- >mRNA_P-wetherbeei_contig12920.1.1 ID=mRNA_P-wetherbeei_contig12920.1.1|Name=mRNA_P-wetherbeei_contig12920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig12920:2..814- (Phaeothamnion wetherbeei SAG_119_79)back to top |