mRNA_P-wetherbeei_contig12920.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12920.1.1
Unique NamemRNA_P-wetherbeei_contig12920.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 1.350e-111
Identity = 176/277 (63.54%), Postives = 213/277 (76.90%), Query Frame = 1
Query:    7 RPTTQLTFKPLYGCMEGSGG-GPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALT-----QRHGGPKR--RAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRLGGY 813
            R   ++ F PLYGC EG+ G  P+ S+LE+GGV ILLDCGWDIHFD A+LEPLR+V+ R+DLVLISH DLEHLGGLPYA G+LG+ A VY TLPV KMGQM VYDA +SR  EG+F    LDDVD AFA+FK LKFSQHL  +GRG G+T+TPYAAG +IG A WR++W++EDND+VYA +YN+  ERHL+ SAL G + RPSVLI+DAHNALT     ++    KR  R  EL+  +M TVRGGGNVL+PTD +GRVLELL LL+ YW + RLG Y
Sbjct:  122 RSKGKVVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHERHLRASAL-GTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQKHRLGSY 397          
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 348 bits (893), Expect = 6.170e-111
Identity = 169/272 (62.13%), Postives = 211/272 (77.57%), Query Frame = 1
Query:   16 TQLTFKPLYGCME--GSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDA--VLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLA--GRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRLGGY 813
            T +TF PLYGC +  G G GP+CSLLE+G V ILLDCGWDI FD ++L PL  V+ RVDLVLISH+DLEHLGGLPYAVG+LGL APV+ TLP  KMGQM VYDA  + S E  G F   +LDD D AF +F+PLK+SQHLR +  GRG G+T+TPYAAGH+IGG+ WRI W+++DND+VYAVSYNH+ E HL G A+E  + RPS++I+DAH  LT +   P++RA++L E++ ATVR GGNVL+P D +GRVLELL LLD +WT+ +LG Y
Sbjct:   46 TDVTFTPLYGCFDDTGRGAGPVCSLLEVGDVTILLDCGWDIDFDESLLAPLASVVSRVDLVLISHADLEHLGGLPYAVGKLGLKAPVFATLPTLKMGQMTVYDAHQMRSLEANGTFKAFTLDDADAAFERFQPLKYSQHLRFSEGGRGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREEHLNGGAVE-TLSRPSIMITDAHQVLTMQPKPPRKRASDLTEMVTATVRKGGNVLLPCDTAGRVLELLLLLDHHWTRNKLGSY 316          
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A2P6VIQ6_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VIQ6_9CHLO)

HSP 1 Score: 284 bits (726), Expect = 6.190e-87
Identity = 145/261 (55.56%), Postives = 184/261 (70.50%), Query Frame = 1
Query:   28 FKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAE--LLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRL 804
            F PL G     GG PL  LLE+ G   LLDCGW   +D+A L P+  VL RVD VL+SHSD +HLG LPY VGR GL APVY T PVHKMGQM +YD  LSR+ + +FD  +LDDVD AFA+  PL++ Q+L L+G+G G+T+TP+AAGH++GGA WRI W  ED   VYAV YNH+ ERHL G+ALE    RP++LISDA NAL      P++   E  LLE +M T+RG G+VL+P D +GR+LEL+ LL+ +W++ RL
Sbjct:   14 FTPLLGV---GGGQPLSYLLELAGFAFLLDCGWSDAYDVAQLAPVLAVLPRVDAVLLSHSDPQHLGALPYLVGRAGLAAPVYATSPVHKMGQMAMYDQYLSRQAQSEFDTFNLDDVDAAFARVTPLRYQQNLALSGKGVGITLTPFAAGHLLGGAVWRIRWGGED--FVYAVDYNHRKERHLNGTALESAFQRPALLISDALNAL---QSAPEKSTKEKDLLEAVMTTLRGDGSVLLPIDTAGRLLELVLLLEKHWSEHRL 266          
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: C1FDL7_MICCC (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FDL7_MICCC)

HSP 1 Score: 280 bits (717), Expect = 2.030e-85
Identity = 141/266 (53.01%), Postives = 186/266 (69.92%), Query Frame = 1
Query:   16 TQLTFKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRLGGY 813
            T++ F PLYG ++G G  P C +L++ G +ILLDCGW+  FD+ +LEPL  V   VD VLISH D EHLG LPYA G+LG+   VY TLPVHKMG M +YD  LSR    DF V +LDD+D AF+ F P++++Q   L G G G+T+TPYAAGH++GGA W++    E +DVVYAV++NH+ E+HL G+ LE +  RP+VLI+DA NA  +R    K R  +L+E I+ TVR  GNVLIP D +GRVLELL +L+  W+Q +L  Y
Sbjct:    6 TRIKFSPLYG-VQGIGEDPFCYVLDLDGFKILLDCGWNDSFDVNLLEPLAKVAAEVDAVLISHPDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSRNANEDFRVFTLDDIDTAFSAFVPVRYAQRSALVGHGAGITITPYAAGHMLGGALWKV--HKETDDVVYAVNFNHRREKHLNGTVLESIK-RPAVLITDASNA--RRLPPSKTRENDLIEAILRTVRQDGNVLIPIDPAGRVLELLLVLEERWSQKQLAAY 265          
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A2P4YIS9_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YIS9_9STRA)

HSP 1 Score: 265 bits (676), Expect = 2.020e-84
Identity = 136/263 (51.71%), Postives = 186/263 (70.72%), Query Frame = 1
Query:   22 LTFKPLYGCMEGSGGGPLCS-LLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSR-EQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRL 804
            +TF PLYG    +   P C+ LLE+  V ILLDCGW   +D+ +L+PL+ V+ R+DLVL+SH DL H+G LPYA+G+LGLNAPVY TLPVH+MGQ+ +YDA  ++ + + DF + SLDDVD  F +FK LK+S+ L L   GEG+ +TP+ AGH+IGGA WRI    E +D++YAV YNH+ E  L+ + L+    RP++LI+D+ N L       K R ++++  I+ TVR GGNVLIPTD+SGRVLEL+ +LD YW Q +L
Sbjct:    4 ITFTPLYGVHSSA---PCCAYLLEVDEVCILLDCGWTDEYDVELLKPLQRVVDRIDLVLVSHLDLAHMGALPYAMGKLGLNAPVYGTLPVHRMGQIALYDAFQAKTKHDSDFSLFSLDDVDLVFERFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIM--KETDDIIYAVDYNHRSEHVLQKTILDSFT-RPTLLITDSMN-LHAEQPKLKDRDSKIMMEILKTVRNGGNVLIPTDSSGRVLELMRVLDQYWIQNKL 259          
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A2R6XNT6_MARPO (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XNT6_MARPO)

HSP 1 Score: 272 bits (695), Expect = 1.040e-82
Identity = 142/268 (52.99%), Postives = 183/268 (68.28%), Query Frame = 1
Query:    1 MGRPTTQLTFKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRL 804
            MG  + Q+T  PL G    S   PLC LLE+ G R LLDCGW   FD+A L+PL  V   +D VL+S+ D  HLG LPYAVG LGL A VYCTLPVH+MGQM +YD  LSR    +FD+ +LDDVD AF     LK+SQH  L G+GEG+T+TPYAAG ++GG  W+IT  +ED  ++YAV +NH+ ERHL G+ L+  V RP+VLI+D++NAL  +    K+R AE L+V+M  +R GGNVL+P + +GRVLEL+  LD  W   +L
Sbjct:   17 MGSSSVQIT--PLSGAHSES---PLCYLLEVDGFRFLLDCGWTDAFDVAQLQPLASVASTIDAVLLSYPDTMHLGALPYAVGNLGLTATVYCTLPVHRMGQMYMYDHYLSRRAVSNFDLFNLDDVDTAFGNSVQLKYSQHHLLQGKGEGITITPYAAGRLLGGTVWKITVDTED--IIYAVDFNHRKERHLNGTVLQSFV-RPAVLITDSYNALNNQPL-QKQRDAEFLDVVMKALRAGGNVLLPVETAGRVLELVLYLDKCWAGDKL 275          
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A6B2L931_9EUKA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L931_9EUKA)

HSP 1 Score: 259 bits (662), Expect = 3.700e-82
Identity = 133/260 (51.15%), Postives = 181/260 (69.62%), Query Frame = 1
Query:   13 TTQLTFKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWT 792
            T+ + F PL G        PLC LLEI   RILLDCGW+  +D+ +L+PL+ V+G+++ VLISH DL HLG LPYAVG+LGL A +  T+PV+KMGQM +YDA  SR+   +F V +LDDVD AF  F  LK+SQ   L+G+G  L +TPYAAGH+IGG  W+I  + E ++++YAV YNH+ ERHL  + LE +  +P++LI+DA NAL  +     R +  L+E I +T+R GGNVL+P D +GRVLELL +LD +W+
Sbjct:    2 TSIIKFSPLCGAYNED---PLCYLLEIDEYRILLDCGWNDDYDVQLLKPLKRVVGKINAVLISHPDLHHLGALPYAVGKLGLKAKIIGTIPVYKMGQMFMYDAYQSRQNSEEFTVFNLDDVDAAFDNFVQLKYSQRYTLSGKGIKLEITPYAAGHLIGGTIWKI--KRETDEIIYAVDYNHKKERHLSPTILETLT-QPTLLITDALNALNSQDSRGNRDSL-LIESITSTLRAGGNVLLPVDTAGRVLELLVILDQHWS 254          
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: M4C192_HYAAE (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C192_HYAAE)

HSP 1 Score: 265 bits (678), Expect = 1.680e-80
Identity = 135/263 (51.33%), Postives = 187/263 (71.10%), Query Frame = 1
Query:   22 LTFKPLYGCMEGSGGGPLCS-LLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSR-EQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRL 804
            +TF PLYG    +   P C+ LLE+  V ILLDCGW   +D+ +L+PL+ V+ R+DLVL+SH DL H+G LPYA+G+LGLNAP+Y TLPVH+MGQ+ +YDA  ++ + E DF + SLDDVD  F +F+ LK+S+ L L   GEG+ +TP+ AGH+IGGA WRI    E +D++YAV YNH+ E  L+ + L+    RP++LI+D+ N L +     K R ++++  I+ TVR GGNVLIPTD+SGRVLEL+ +LD YW Q +L
Sbjct:    4 ITFTPLYGVHSSA---PCCAYLLEVDDVCILLDCGWTDEYDVEILKPLQRVVDRIDLVLVSHLDLAHMGALPYAMGKLGLNAPIYGTLPVHRMGQIALYDAFQAKTKHESDFALFSLDDVDLVFEKFQQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIV--KETDDIIYAVDYNHRSEHVLQKTILDSFT-RPTLLITDSMN-LHREQPKLKDRDSKIMMEILKTVRNGGNVLIPTDSSGRVLELMRVLDQYWIQNKL 259          
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: A0A6U9RRA8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RRA8_9CHLO)

HSP 1 Score: 266 bits (679), Expect = 1.810e-80
Identity = 133/262 (50.76%), Postives = 181/262 (69.08%), Query Frame = 1
Query:   28 FKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRLGGY 813
            F PL G     G  P+C LLE+     LLDCGWD   ++  L+ L   + +VD VL+SH+D +HLG LPYAVG+LGL+ PVY TLPVHKMGQM +YD  LS+  E +++  +L+DVDRAF  F P++++Q + L G+GEG+T+TP+ AGH +GG  WRIT  +ED  ++YAV YNH+ ERHL G+AL     RP+VLI+DA+N LT++    K R   L+  +M T+R GGNVLIP D + RVLELL +LD++W   ++G Y
Sbjct:   18 FVPLCGV---HGQEPMCYLLEVDAFVFLLDCGWDDRTEVMDLKELEAHVEKVDAVLVSHADTKHLGALPYAVGKLGLDCPVYATLPVHKMGQMVLYDLYLSKRAEEEYETFNLNDVDRAFGMFNPMRYAQQINLTGKGEGITITPFPAGHSVGGTTWRITKEAED--ILYAVDYNHRKERHLNGAALH-TFNRPAVLITDAYNGLTEQTS-RKLRDRTLVAGVMQTLRSGGNVLIPVDTATRVLELLLVLDSHWEHQKIGLY 272          
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Match: K3WHC0_GLOUD (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHC0_GLOUD)

HSP 1 Score: 265 bits (677), Expect = 4.390e-80
Identity = 135/263 (51.33%), Postives = 186/263 (70.72%), Query Frame = 1
Query:   22 LTFKPLYGCMEGSGGGPLCS-LLEIGGVRILLDCGWDIHFDLAVLEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMGQMGVYDAVLSR-EQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGLTVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVVGRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASGRVLELLDLLDAYWTQPRL 804
            +TF PLYG        P C+ LLEI  V ILLDCGW   +D  +L+PL+ V+ R+DLVLISH DL H+G LPYA+G+LGL AP+Y TLPVH+MGQ+ +YDA  ++ + +GDF + +LDDVD  F  FK LK+S+ L L   GEG+ +TP+ AGH+IGG+ WRI    E +D++YAV YNH+ E  L+ + L+    RP++LI+D+ N  +++    K R ++++  I+ TVRGGGNVLIPTD+SGRVLEL+ +LD YW Q +L
Sbjct:    4 ITFTPLYGVHSSD---PCCAYLLEIDDVCILLDCGWTDQYDTELLKPLQRVIDRIDLVLISHLDLAHMGALPYAIGKLGLKAPIYGTLPVHRMGQIALYDAYQAKTKSDGDFALFTLDDVDAVFENFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGSLWRI--EKETDDIIYAVDYNHRSEHVLQKTILDSFT-RPTLLITDSMNIHSEQPK-LKDRDSKIMVEILKTVRGGGNVLIPTDSSGRVLELMRVLDQYWIQNKL 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12920.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA4_ECTSI1.350e-11163.54Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA6.170e-11162.13Cleavage and polyadenylation specificity factor su... [more]
A0A2P6VIQ6_9CHLO6.190e-8755.56Cleavage and polyadenylation specificity factor su... [more]
C1FDL7_MICCC2.030e-8553.01Cleavage and polyadenylation specificity factor su... [more]
A0A2P4YIS9_9STRA2.020e-8451.71Cleavage and polyadenylation specificity factor su... [more]
A0A2R6XNT6_MARPO1.040e-8252.99Cleavage and polyadenylation specificity factor su... [more]
A0A6B2L931_9EUKA3.700e-8251.15Cleavage and polyadenylation specificity factor su... [more]
M4C192_HYAAE1.680e-8051.33Cleavage and polyadenylation specificity factor su... [more]
A0A6U9RRA8_9CHLO1.810e-8050.76Cleavage and polyadenylation specificity factor su... [more]
K3WHC0_GLOUD4.390e-8051.33Cleavage and polyadenylation specificity factor su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12920contigP-wetherbeei_contig12920:2..814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQA4
Preferred nameCPSF2
PFAMsBeta-Casp,CPSF100_C,Lactamase_B_6,RMMBL
Model size813
Max annot lvl2759|Eukaryota
KEGG koko:K14402,ko:K17606
KEGG Pathwayko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Exons1
Evalue2.21e-112
EggNOG OGsCOG1236@1|root,KOG1135@2759|Eukaryota
DescriptionmRNA cleavage
Cds size813
COG categoryJ
BRITEko00000,ko00001,ko01009,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.5770319-CDS-P-wetherbeei_contig12920:1..8141683185966.5770319-CDS-P-wetherbeei_contig12920:1..814Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12920 2..814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12920.1.1prot_P-wetherbeei_contig12920.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12920 2..814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12920.1.1

>prot_P-wetherbeei_contig12920.1.1 ID=prot_P-wetherbeei_contig12920.1.1|Name=mRNA_P-wetherbeei_contig12920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp
MGRPTTQLTFKPLYGCMEGSGGGPLCSLLEIGGVRILLDCGWDIHFDLAV
LEPLRDVLGRVDLVLISHSDLEHLGGLPYAVGRLGLNAPVYCTLPVHKMG
QMGVYDAVLSREQEGDFDVISLDDVDRAFAQFKPLKFSQHLRLAGRGEGL
TVTPYAAGHVIGGAFWRITWRSEDNDVVYAVSYNHQGERHLKGSALEGVV
GRPSVLISDAHNALTQRHGGPKRRAAELLEVIMATVRGGGNVLIPTDASG
RVLELLDLLDAYWTQPRLGGY
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mRNA from alignment at P-wetherbeei_contig12920:2..814-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12920.1.1 ID=mRNA_P-wetherbeei_contig12920.1.1|Name=mRNA_P-wetherbeei_contig12920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig12920:2..814- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAGGCCCACGACGCAACTGACGTTCAAGCCGCTCTATGGCTGCAT GGAAGGCAGCGGGGGGGGTCCTCTGTGCTCGCTGCTCGAGATCGGCGGCG TGCGCATCCTCCTGGATTGCGGCTGGGACATTCACTTCGACTTGGCCGTG CTGGAGCCGCTGCGGGACGTGTTGGGACGCGTGGACCTCGTGCTCATCTC GCATTCGGACCTCGAGCACCTCGGCGGGCTGCCGTACGCCGTGGGCCGCC TCGGGCTCAACGCGCCCGTCTACTGCACGCTCCCGGTGCACAAGATGGGT CAGATGGGCGTCTATGACGCGGTACTCTCGCGGGAGCAGGAGGGCGACTT TGACGTTATTTCACTCGACGACGTCGACCGCGCCTTTGCGCAGTTCAAGC CCCTCAAGTTCTCGCAGCACCTGCGGCTCGCTGGTCGCGGCGAGGGGCTC ACCGTGACACCCTACGCCGCCGGCCACGTCATCGGCGGCGCCTTCTGGCG CATCACCTGGCGGAGCGAGGACAATGATGTCGTCTACGCCGTTTCCTACA ACCACCAGGGCGAGCGCCACCTGAAGGGCTCTGCGCTGGAGGGCGTCGTC GGCCGCCCGAGCGTCCTCATCTCCGACGCCCACAACGCGCTCACGCAGCG CCATGGCGGGCCGAAGCGCCGCGCCGCCGAGCTCTTGGAAGTCATCATGG CCACCGTCCGCGGCGGCGGCAACGTCTTGATCCCGACGGACGCCTCCGGA CGCGTCCTGGAGCTTCTGGACCTCCTGGACGCCTACTGGACGCAGCCCCG GCTGGGTGGCTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12920:2..814-

>mRNA_P-wetherbeei_contig12920.1.1 ID=mRNA_P-wetherbeei_contig12920.1.1|Name=mRNA_P-wetherbeei_contig12920.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig12920:2..814- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAGGCCCACGACGCAACTGACGTTCAAGCCGCTCTATGGCTGCAT
GGAAGGCAGCGGGGGGGGTCCTCTGTGCTCGCTGCTCGAGATCGGCGGCG
TGCGCATCCTCCTGGATTGCGGCTGGGACATTCACTTCGACTTGGCCGTG
CTGGAGCCGCTGCGGGACGTGTTGGGACGCGTGGACCTCGTGCTCATCTC
GCATTCGGACCTCGAGCACCTCGGCGGGCTGCCGTACGCCGTGGGCCGCC
TCGGGCTCAACGCGCCCGTCTACTGCACGCTCCCGGTGCACAAGATGGGT
CAGATGGGCGTCTATGACGCGGTACTCTCGCGGGAGCAGGAGGGCGACTT
TGACGTTATTTCACTCGACGACGTCGACCGCGCCTTTGCGCAGTTCAAGC
CCCTCAAGTTCTCGCAGCACCTGCGGCTCGCTGGTCGCGGCGAGGGGCTC
ACCGTGACACCCTACGCCGCCGGCCACGTCATCGGCGGCGCCTTCTGGCG
CATCACCTGGCGGAGCGAGGACAATGATGTCGTCTACGCCGTTTCCTACA
ACCACCAGGGCGAGCGCCACCTGAAGGGCTCTGCGCTGGAGGGCGTCGTC
GGCCGCCCGAGCGTCCTCATCTCCGACGCCCACAACGCGCTCACGCAGCG
CCATGGCGGGCCGAAGCGCCGCGCCGCCGAGCTCTTGGAAGTCATCATGG
CCACCGTCCGCGGCGGCGGCAACGTCTTGATCCCGACGGACGCCTCCGGA
CGCGTCCTGGAGCTTCTGGACCTCCTGGACGCCTACTGGACGCAGCCCCG
GCTGGGTGGCTAC
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