mRNA_P-wetherbeei_contig12905.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig12905.1.1
Unique Name	mRNA_P-wetherbeei_contig12905.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Match: K3X845_GLOUD (RING-type E3 ubiquitin transferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X845_GLOUD)

HSP 1 Score: 81.6 bits (200), Expect = 4.840e-16
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 1

Query:    1 TDPSNVMVL-TNAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALREGHF-CPACRVHVSTRRSLRR 207
            TDPS    L    ++ ELTCPICL ++++T VV EC+HRFCG CI K LR G+  CP+CR+H+ ++RSLRR
Sbjct:   62 TDPSATKTLPVRVLNAELTCPICLGIIRNTMVVMECLHRFCGECIQKCLRLGNKECPSCRIHIPSKRSLRR 132

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BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Match: A0A2P4XLU4_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XLU4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.950e-15
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 1

Query:    1 TDPSNVMVLT-NAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALREGHF-CPACRVHVSTRRSLR 204
            TDP+    L+   ++ +LTCPICL +LK+T VV EC+HRFCG CI+ A+R+ +  CP+CR+H+ ++RSLR
Sbjct:   59 TDPNATKTLSVRQLNADLTCPICLSILKETMVVMECLHRFCGECISTAIRQSNRECPSCRIHIPSKRSLR 128

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BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Match: A0A662X7H6_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7H6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.820e-15
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 1

Query:    1 TDPSNVMVL-TNAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALREGHF-CPACRVHVSTRRSLR 204
            TDP+    L    ++ +LTCPICL ++K+T VV EC+HRFCG CI+ A+R+    CP+CR+H+ ++RSLR
Sbjct:   61 TDPNATKTLPVRVLNADLTCPICLGIIKETMVVMECLHRFCGACISTAIRQNQRQCPSCRIHIPSKRSLR 130

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BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Match: H3H116_PHYRM (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H116_PHYRM)

HSP 1 Score: 78.6 bits (192), Expect = 5.850e-15
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1

Query:    1 TDPSNVMVLT-NAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALREG-HFCPACRVHVSTRRSLR 204
            TDPS    L+   ++ +LTCPICL ++K+T VV EC+HRFCG CI+ A+R     CP+CR+H+ ++RSLR
Sbjct:   57 TDPSATRTLSVRVLNADLTCPICLGIIKETMVVMECLHRFCGECISTAIRHSKRECPSCRIHIPSKRSLR 126

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BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Match: A0A662XZT3_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZT3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.230e-15
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 1

Query:    1 TDPSNVMVL-TNAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALREGHF-CPACRVHVSTRRSLR 204
            TDP+    L    ++ +LTCPICL ++K+T VV EC+HRFCG CI+ A+R+    CP+CR+H+ ++RSLR
Sbjct:  210 TDPNATKTLPVRVLNADLTCPICLGIIKETMVVMECLHRFCGACISTAIRQNQRQCPSCRIHIPSKRSLR 279

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BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Match: A0A5D6XKN8_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKN8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.290e-15
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1

Query:    1 TDPSNVMVL-TNAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALR-EGHFCPACRVHVSTRRSLRR 207
            TDP     L    ++ ELTCPICL V++ T VV EC+HRFCG CI K LR     CP+CR+H+ ++RSLRR
Sbjct:   63 TDPRATKTLPVRVLNAELTCPICLGVIRSTMVVMECLHRFCGECIQKCLRLSNRECPSCRIHIPSKRSLRR 133

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BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Match: A0A0W8CA54_PHYNI (RING-type E3 ubiquitin transferase n=19 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CA54_PHYNI)

HSP 1 Score: 77.8 bits (190), Expect = 1.060e-14
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1

Query:    1 TDPSNVMVLT-NAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALREG-HFCPACRVHVSTRRSLR 204
            TDP+    L+   ++ +LTCPICL ++K+T VV EC+HRFCG CI+ A+R+    CP+CR+H+ ++RSLR
Sbjct:   58 TDPNATKTLSIRQLNADLTCPICLGIIKETMVVMECLHRFCGECISTAIRQSKRECPSCRIHIPSKRSLR 127

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BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Match: A0A225VR01_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VR01_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.480e-14
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1

Query:    1 TDPSNVMVLT-NAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALREG-HFCPACRVHVSTRRSLR 204
            TDP+    L+   ++ +LTCPICL ++K+T VV EC+HRFCG CI+ A+R+    CP+CR+H+ ++RSLR
Sbjct:   57 TDPNATKTLSVRHLNADLTCPICLGIIKETMVVMECLHRFCGECISTAIRQSKRECPSCRIHIPSKRSLR 126

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BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Match: G4ZGG9_PHYSP (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZGG9_PHYSP)

HSP 1 Score: 77.4 bits (189), Expect = 1.560e-14
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1

Query:    1 TDPSNVMVLT-NAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALREG-HFCPACRVHVSTRRSLR 204
            TDP+    L+   ++ +LTCPICL ++K+T VV EC+HRFCG CI+ A+R+    CP+CR+H+ ++RSLR
Sbjct:   63 TDPAATKTLSVRQLNADLTCPICLGIIKETMVVMECLHRFCGDCISTAIRQSKRECPSCRIHIPSKRSLR 132

[Close]

BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Match: A0A484E6Z9_BRELC (RING-type E3 ubiquitin transferase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E6Z9_BRELC)

HSP 1 Score: 77.0 bits (188), Expect = 2.070e-14
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 1

Query:    1 TDPSNVMVLT-NAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALREG-HFCPACRVHVSTRRSLR 204
            TDP+    L+   ++ +LTCPICL ++K T VV EC+HRFCG CI+ A+R+    CP+CR+H+ ++RSLR
Sbjct:   58 TDPNATKTLSVRQLNADLTCPICLGIIKQTMVVMECLHRFCGECISTAIRQSKRECPSCRIHIPSKRSLR 127

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig12905.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
K3X845_GLOUD	4.840e-16	54.93	RING-type E3 ubiquitin transferase n=1 Tax=Globisp...	[more]
A0A2P4XLU4_9STRA	2.950e-15	51.43	RING-type E3 ubiquitin transferase n=1 Tax=Phytoph...	[more]
A0A662X7H6_9STRA	4.820e-15	50.00	RING-type E3 ubiquitin transferase n=1 Tax=Nothoph...	[more]
H3H116_PHYRM	5.850e-15	51.43	RING-type E3 ubiquitin transferase n=1 Tax=Phytoph...	[more]
A0A662XZT3_9STRA	7.230e-15	50.00	RING-type E3 ubiquitin transferase n=1 Tax=Nothoph...	[more]
A0A5D6XKN8_9STRA	8.290e-15	53.52	RING-type E3 ubiquitin transferase n=1 Tax=Pythium...	[more]
A0A0W8CA54_PHYNI	1.060e-14	50.00	RING-type E3 ubiquitin transferase n=19 Tax=Phytop...	[more]
A0A225VR01_9STRA	1.480e-14	50.00	RING-type E3 ubiquitin transferase n=1 Tax=Phytoph...	[more]
G4ZGG9_PHYSP	1.560e-14	50.00	RING-type E3 ubiquitin transferase n=1 Tax=Phytoph...	[more]
A0A484E6Z9_BRELC	2.070e-14	50.00	RING-type E3 ubiquitin transferase n=1 Tax=Bremia ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig12905	contig	P-wetherbeei_contig12905:389..1072 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	115417.EPrPW00000013128
PFAMs	zf-C3HC4_2
Model size	305
Max annot lvl	121069\|Pythiales
Hectar predicted targeting category	other localisation
Exons	2
Evalue	2.35e-16
EggNOG OGs	KOG0311@1\|root,KOG0311@2759\|Eukaryota,1MBFP@121069\|Pythiales
Description	Ring finger protein 2. Source PGD
Cds size	285
COG category	O

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683185965.9927025-UTR-P-wetherbeei_contig12905:388..406	1683185965.9927025-UTR-P-wetherbeei_contig12905:388..406	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig12905 389..406 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683185966.0036068-CDS-P-wetherbeei_contig12905:406..595	1683185966.0036068-CDS-P-wetherbeei_contig12905:406..595	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig12905 407..595 +
1683185966.0219245-CDS-P-wetherbeei_contig12905:976..1072	1683185966.0219245-CDS-P-wetherbeei_contig12905:976..1072	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig12905 977..1072 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig12905.1.1	prot_P-wetherbeei_contig12905.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig12905 407..1072 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig12905:389..1072+
coding sequence from alignment at P-wetherbeei_contig12905:389..1072+

protein sequence of mRNA_P-wetherbeei_contig12905.1.1

>prot_P-wetherbeei_contig12905.1.1 ID=prot_P-wetherbeei_contig12905.1.1|Name=mRNA_P-wetherbeei_contig12905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
MVLTNAMSQELTCPICLDVLKDTHVVKECMHRFCGVCITKALREGHFCPA
CRVHVSTRRSLRRGATPTLMHSSGASTQTWRSTSGSSTRSSRTKT

mRNA from alignment at P-wetherbeei_contig12905:389..1072+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig12905.1.1 ID=mRNA_P-wetherbeei_contig12905.1.1|Name=mRNA_P-wetherbeei_contig12905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig12905:389..1072+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGACCCAAGCAATGTGATGGTGCTGACGAACGCCATGAGCCAGGAGCT
GACGTGCCCCATCTGCCTGGATGTCTTGAAGGACACGCATGTGGTCAAGG
AATGCATGCACCGCTTCTGCGGTGTCTGCATCACCAAGGCGTTGCGGGAG
GGACACTTCTGCCCGGCCTGCCGCGTCCACGTCTCCACCCGCCGCTCCCT
TAGGCGAGTTTCTGCCTCTCTTTCCGCGGTTTCCTCGGGCGCGGCTTGAA
AGGCTGTTCATTTCTGCGTGCCGGCCCTTTCCAGACTTGCAGGTCGAAGG
AGGAGAAAGTATCGCGAAACAAATGCAGAAACGCATCACAGAAAACAAAT
AGACACACCTTGTGATAATTTAGGACTGTCAAAACTTCAACATGTGTATT
AGCTAAGGGTTCTGTTGCCCTCGAACGCCCTTGCCAGAATTGCTCTTCAT
AACTCATCAAAACGCCACCGTTCTCCACCGCGTCGGCTGCCTGCCGCTCT
TCTGCCTTCCGCCGCTCACCTTTCCTCTTCTTTCCACTTGGGTTTGGTCA
TTCTTCCGATCTCTGTCTCTTGGTCTCTCTCCTTCTCAGGAGCGACTCCA
ACTTTGATGCACTCATCCGGCGCATCTACCCAAACCTGGAGGAGTACGAG
CGGGAGCAGCACAAGGTCATCGAGGACGAAAACA

Coding sequence (CDS) from alignment at P-wetherbeei_contig12905:389..1072+

>mRNA_P-wetherbeei_contig12905.1.1 ID=mRNA_P-wetherbeei_contig12905.1.1|Name=mRNA_P-wetherbeei_contig12905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig12905:389..1072+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTGACGAACGCCATGAGCCAGGAGCTGACGTGCCCCATCTGCCT
GGATGTCTTGAAGGACACGCATGTGGTCAAGGAATGCATGCACCGCTTCT
GCGGTGTCTGCATCACCAAGGCGTTGCGGGAGGGACACTTCTGCCCGGCC
TGCCGCGTCCACGTCTCCACCCGCCGCTCCCTTAGGCGAGGAGCGACTCC
AACTTTGATGCACTCATCCGGCGCATCTACCCAAACCTGGAGGAGTACGA
GCGGGAGCAGCACAAGGTCATCGAGGACGAAAACA