mRNA_P-wetherbeei_contig12900.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12900.1.1
Unique NamemRNA_P-wetherbeei_contig12900.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Match: A0A835ZA45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA45_9STRA)

HSP 1 Score: 284 bits (726), Expect = 1.750e-91
Identity = 145/226 (64.16%), Postives = 184/226 (81.42%), Query Frame = 1
Query:    1 ALLDQLMGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPNREEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVRVDAENADAGIDNAKVQQLVEIDKQIREKTAESEKVAEEGEVDEAQQLLTQVEALRREKAMIEKSATS-KSAKRNVVCEVSGNIMSSSDNEERIRCHFEGKQYLGWKACREKLEDLRKKLS 675
            ALLDQLMGRER+VPL +RT R RHF DDDVCKF L GLCPY LF+NTKSDLG+HPN EEDN+D+K  Y+A P  E+ RY Y+R L+  LE+LV+G DRKVERNR R + EN+ +GI    +Q+L++++  I+EKT ESEK+AE+GE+DEAQ  L +V +++++K  IEK  TS K+ KRN+VCEVSGNIMSS+DNEERI CHF+GKQYLGWKACREK+++LR+K S
Sbjct:    6 ALLDQLMGRERDVPLDKRTNRKRHFTDDDVCKFHLVGLCPYALFNNTKSDLGEHPNGEEDNDDMKEMYEARPLEERERYGYERQLLRCLEELVAGVDRKVERNRERCNLENSGSGIPEDALQELLKLEVGIKEKTEESEKLAEDGEIDEAQARLEEVASMQQKKNSIEKQYTSIKTVKRNIVCEVSGNIMSSADNEERIMCHFQGKQYLGWKACREKVKELREKFS 231          
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Match: A0A7S3UYV8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYV8_HETAK)

HSP 1 Score: 201 bits (512), Expect = 7.590e-58
Identity = 103/222 (46.40%), Postives = 156/222 (70.27%), Query Frame = 1
Query:    4 LLDQLMGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPNREEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVRVDAENADAGIDNAKVQQLVEIDKQIREKTAESEKVAEEGEVDEAQQLLTQVEALRREKAMIEKSATSKSAKRNVVCEVSGNIMSSSDNEERIRCHFEGKQYLGWKACREKLEDLRKK 669
            +LDQLMG+ RNV L +   + RHF+D DVCKF L GLCPY +F NT+SDLG HP  EED++  K  YD L ++EK RY Y+++L+ FL  LV  CD+++E  + R      D  +   +V+++  +++Q+ + TA+SE +AEEGE+DEAQ+L+ +VE L+ +K  I  +   +  KR +VC++SGN+MSS+DN+ERI  HF+GK Y+GWKA R+K+ ++ ++
Sbjct:   23 MLDQLMGKARNVNLGEEV-KARHFSDPDVCKFHLCGLCPYEMFKNTRSDLGGHPEDEEDDDKCKEEYDKLSDSEKRRYGYEKNLLEFLRRLVRQCDQRIESQKAR----QLDTTVSQEEVERIAALERQMADLTAKSEALAEEGEIDEAQKLIEEVERLKIQKEAIANAPMRE--KRMIVCDISGNLMSSTDNDERIDAHFQGKLYIGWKAVRDKVAEIEER 237          
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Match: A0A7R9UBH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBH9_9STRA)

HSP 1 Score: 196 bits (498), Expect = 4.140e-57
Identity = 107/227 (47.14%), Postives = 156/227 (68.72%), Query Frame = 1
Query:    4 LLDQLMGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPNREEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVRVDAENADAGIDNAKVQQLVEIDKQIREKTAESEKVAEEGEVDEAQQLLTQVEALR--REKAMIEKSATSKSAKRNVVCEVSGNIMSSSDNEERIRCHFEGKQYLGWKACREKLEDLRKKLSV 678
            LL+QLMG++RN+P+SQ+  R RHF+D DVCK FL GLCP+ LF+NTKSDLG H   EED+ +++  + AL   E+ RY Y R L+  LED+++GCDRK+ERNR RV  E  +A    A++  ++ +D+Q+ +    +E +A+E +V+ A  +L +V  L+  REK +      SK   R VVC+V GN M+S+D  +R+RCHF G+QY GWK CREK+++LR+ L +
Sbjct:   24 LLNQLMGKDRNLPVSQQ--RKRHFSDRDVCKHFLCGLCPFELFTNTKSDLGPHAYNEEDDPEMRKQFQALDVQEQLRYGYHRALLRLLEDMIAGCDRKIERNRERVIREEREAVPTPAEIDDVLAVDRQVEDFVDSAEALAKELDVEAAWDMLGEVHKLQLDREKLLTGGDMLSK---RTVVCDVCGNFMTSTDGVDRLRCHFAGRQYQGWKLCREKVKELRELLRL 245          
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Match: A0A6U1IEU4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A6U1IEU4_9CHLO)

HSP 1 Score: 187 bits (476), Expect = 1.370e-53
Identity = 106/223 (47.53%), Postives = 147/223 (65.92%), Query Frame = 1
Query:    4 LLDQLMGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPNREEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVRVDAENADAGIDNAKVQQLVEIDKQIREKTAESEKVAEEGEVDEAQQLLTQVEALRREKAMIEKSATSKSAKRNVVCEVSGNIMSSSDNEERIRCHFEGKQYLGWKACREKLEDLRKKL 672
            LLD+LMG+ER+VPL +RTGR R F+D DVCK  L GLCPY LF NT+SDLG        +E++KA +DAL E E+SRY Y+ +LM  LE L    DRK++R + R + E+    + +A    L E+D +++E   ++E++ EEG+VD AQ    Q EA  ++K    + AT +  +   VC++ G  M+S+DNE R R H  GKQYLGWKA REKL++L+KKL
Sbjct:   23 LLDELMGKERDVPLERRTGRARRFDDPDVCKHDLCGLCPYSLFKNTRSDLGVCKWEFHGDEEVKAEWDALEERERSRYPYEHELMGVLEQLTREMDRKIQRAKDRAEKESQPRPLSDADKVALDELDTKMKEALEKAEQLGEEGDVDGAQVFSQQAEAFAKQKESKHRQAT-QPERTMTVCDICGVFMNSTDNEARRRDHLSGKQYLGWKAIREKLDELQKKL 244          
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Match: D7G2B3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B3_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 6.180e-53
Identity = 105/236 (44.49%), Postives = 150/236 (63.56%), Query Frame = 1
Query:    1 ALLDQLMGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPNREEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVRVDAENADAGIDNAKVQQLVEIDKQIREKTA-----ESEKVAEEGEVDEAQQLLTQVEALRREKAMIEKSATSKSAKRNVVCEVSGNIM-------SSSDNEERIRCHFEGKQYLGWKACREKLEDLRKKL 672
            ALL+QLMGRER++P+ +RT R R   DDD+CK +L GLCPYV F NT+SDLG+HP  ++ + D+KA +D L E EK +Y Y+R+LM +L DLV  CDR+VE+N+ R+  E  D  + ++++ +L+++++ + EK                                    M EK+  SK   R++VCEVSGNIM       SS++NEERIRCHF+GKQYLGWKA R+KL++L++K 
Sbjct:    6 ALLEQLMGRERDIPVDKRTNRSRKIWDDDICKPYLCGLCPYVDFRNTRSDLGEHPPNQDHDPDVKAQWDKLSEDEKDKYGYERELMTYLMDLVVTCDRRVEKNKERLRLEQGDDNVKDSQIARLIDMERVMSEKMELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAEKNENSK---RDIVCEVSGNIMLVSGNILSSAENEERIRCHFQGKQYLGWKAVRDKLKELKEKF 238          
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Match: A0A7S1CQQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQQ5_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.400e-50
Identity = 100/225 (44.44%), Postives = 148/225 (65.78%), Query Frame = 1
Query:    4 LLDQLMGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPNREEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVRVDAENADAGIDNAKVQQLVEIDKQIREKTAESEKVAEEGEVDEAQQLLTQVEALRREKAMIEKSATSKSAKRNVVCEVSGNIMSSSDNEERIRCHFEGKQYLGWKACREK----LEDLRK 666
            LLD+LMG+ER+VP+  RT + RHF DDDVCK FL G+CP+ L  NTKSDLG H    +D    KA +D L  AE+ +Y YD +    L+ LV  CDR+V RN  R+  + A   + + + +++V+++ ++ E + ++E + EEG+VDEA+  L ++E L+R K  IE  A     K  +VC++SGN +SS+D+E+R+R HFEG+ Y+G+K  RE     LE+LRK
Sbjct:   53 LLDELMGKERDVPVHLRTNKKRHFYDDDVCKHFLVGICPFALLKNTKSDLGTHDLAHDDK--CKAEWDKLSPAEQQKYGYDIETARLLDQLVHDCDRRVARNEARIGEQGA-VRLTDEEAKRMVDMEVEMSELSKQAESLGEEGKVDEAEAALARIEELKRTKQAIE-MARGGGEKTMMVCKISGNYLSSTDSEDRLRAHFEGRLYIGFKTIRETHQKMLEELRK 273          
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Match: A0A061R874_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R874_9CHLO)

HSP 1 Score: 179 bits (454), Expect = 3.320e-50
Identity = 105/229 (45.85%), Postives = 147/229 (64.19%), Query Frame = 1
Query:    1 ALLDQLMGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPNREEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVRVDAENADAGIDNAKVQQLVEIDKQIREKTAESEKVAEEGEVDEAQQLLTQVEALRREKAMIEKSATSKSAKRNVVCEVSGNIMSSSDNEERIRCHFEGKQYLGWKACREKLEDLRKKLS-VPS 684
            ALLD+LMG+ER+VPL  RT + R F+D+D+CK+ L GLCPY LF NT+SDLG        +E +K  +  L E EK+RY Y+ +LM  LE LV   DRK+ R + R + E+A   +  A  + L ++D +++E   ++EK+ EEG+VD AQ    Q E+L ++K    +  T      +V CEV G  ++S+DNE R R H  GKQYLGWKA REKL +L+KKL+ VP+
Sbjct:   26 ALLDELMGKERDVPLDVRTNKARRFDDEDICKYDLCGLCPYSLFKNTRSDLGICKWEVHGDEQVKEQWSKLEEKEKARYPYEHELMTELEQLVREMDRKIARAKDRAEKESAPRPLSEADKKALDDLDAKMKEALEKAEKLGEEGDVDGAQVFSQQAESLAKQKETQYRQLTQPERTMSV-CEVCGVFINSTDNEARRRDHLAGKQYLGWKAIREKLAELQKKLAGVPA 253          
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Match: A0A061RUV9_9CHLO (Luc7-like protein 3-like (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RUV9_9CHLO)

HSP 1 Score: 171 bits (432), Expect = 2.650e-46
Identity = 99/219 (45.21%), Postives = 138/219 (63.01%), Query Frame = 1
Query:    1 ALLDQLMGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPNREEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVRVDAENADAGIDNAKVQQLVEIDKQIREKTAESEKVAEEGEVDEAQQLLTQVEALRREKAMIEKSATSKSAKRNVVCEVSGNIMSSSDNEERIRCHFEGKQYLGWKACREKLED 657
            ALLD+LMG+ER+VPL  RT + R F+D+D+CK+ L GLCPY LF NT+SDLG        +E +K  +  L E EK+RY Y+ +LM  LE LV   DRK+ R + R + E+A   +  A  + L ++D +++E   ++EK+ EEG+VD AQ    Q E+L ++K    +  T      +V CEV G  ++S+DNE R R H  GKQYLGWKA REKL +
Sbjct:   18 ALLDELMGKERDVPLDVRTNKARRFDDEDICKYDLCGLCPYSLFKNTRSDLGICKWEVHGDEQVKEQWSKLEEKEKARYPYEHELMTELEQLVREMDRKIARAKDRAEKESAPRPLSEADKKALDDLDAKMKEALEKAEKLGEEGDVDGAQVFSQQAESLAKQKETQYRQLTQPERTMSV-CEVCGVFINSTDNEARRRDHLAGKQYLGWKAIREKLAE 235          
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Match: A0A7S0DK89_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DK89_9EUKA)

HSP 1 Score: 168 bits (426), Expect = 3.790e-46
Identity = 98/228 (42.98%), Postives = 145/228 (63.60%), Query Frame = 1
Query:    1 ALLDQLMGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPNREEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVRVDAE----NADAGIDNAKVQQLVEIDKQIREKTAESEKVAEEGEVDEAQQLLTQVEALRREKAMIEKSATS--KSAKRNVVCEVSGNIMSSSDNEERIRCHFEGKQYLGWKACREKLEDLRK 666
            ALLDQLMG+ERN    +R    RHF DDDVCK+FL GLCPY LF NTKSDLG++    +     K+ YDALP+ EK +Y Y  DL   L+ L+  CDRK++RN+ R +A+    N    ++  + ++L +I  +I + + E+E+  EEG++++A+ L  +VE LR E   I K       + ++ +VCEVSG +MS++D+E R++  + GKQY GWK  R+   +L+K
Sbjct:   25 ALLDQLMGKERNASFEEREKMQRHFWDDDVCKYFLVGLCPYDLFKNTKSDLGEYDKVFDLR--AKSEYDALPQEEKDKYPYQWDLFDLLKRLIDECDRKIQRNKERCEADERLKNEPKKLNEEEAKRLGQIQDEISKLSKEAEEAGEEGKIEQAKILTMRVEGLRGEAEQIMKKPEDIRLNTRQLMVCEVSGVLMSTTDSESRLKSLYSGKQYQGWKKVRDFYAELQK 250          
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Match: A0A7S2D4R8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4R8_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.520e-45
Identity = 98/238 (41.18%), Postives = 151/238 (63.45%), Query Frame = 1
Query:    4 LLDQLMGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPNREEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVRV------DAENADAGIDNAKVQQLVEIDKQIREKTAESEKVAEEGEVDEAQQLLTQVEALRREKAMIEKSATSKSA-----KRNVVCEVSGNIMSSSDNEERIRCHFEGKQYLGWKACREKLEDLRKKLSVPS 684
            LLD+LMG+ERN+   ++  R RHF+D DVCK+++ GL PY LF NTKSDLG +    +D  D +  ++A+P+ EK +Y Y+ +LM  LE LVS CD KV+R+  R+      + E     +   ++++L  I+ +IR    E+E++ E G V+++   + + ++ RRE+  +E  A + S      K  +VC VSGN M+++DN +R+RCHFEGKQY GWK  R+KL +LR  ++ PS
Sbjct:   10 LLDELMGQERNMNEEEKLNRKRHFSDPDVCKYYICGLSPYNLFKNTKSDLGPYDKVFDD--DSRKQWEAMPQEEKFKYGYEYELMVLLERLVSQCDAKVKRHSERIRQEQQAELEAVQTVLSEDEMKRLAVIEDEIRGAEKEAEELGESGLVEKSIGAIQKADSARREQLGLEAKAATLSREEAGRKHMIVCVVSGNFMNATDNGDRLRCHFEGKQYQGWKRIRDKLAELRA-MNPPS 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12900.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZA45_9STRA1.750e-9164.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UYV8_HETAK7.590e-5846.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UBH9_9STRA4.140e-5747.14Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6U1IEU4_9CHLO1.370e-5347.53Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
D7G2B3_ECTSI6.180e-5344.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1CQQ5_9STRA1.400e-5044.44Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A061R874_9CHLO3.320e-5045.85Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A061RUV9_9CHLO2.650e-4645.21Luc7-like protein 3-like (Fragment) n=1 Tax=Tetras... [more]
A0A7S0DK89_9EUKA3.790e-4642.98Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S2D4R8_9STRA1.520e-4541.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12900contigP-wetherbeei_contig12900:2..1484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2B3
Preferred nameLUC7L3
PFAMsLUC7
Model size981
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons3
Evalue1.86e-51
EggNOG OGsCOG5200@1|root,KOG0796@2759|Eukaryota
Ec32 ortholog descriptionLuc7-related
Ec32 orthologEc-16_001790.1
DescriptionmRNA splice site selection
Cds size699
COG categoryA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185965.813728-UTR-P-wetherbeei_contig12900:1..2651683185965.813728-UTR-P-wetherbeei_contig12900:1..265Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12900 2..265 -
1683185965.84938-UTR-P-wetherbeei_contig12900:1466..14841683185965.84938-UTR-P-wetherbeei_contig12900:1466..1484Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12900 1467..1484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185965.823598-CDS-P-wetherbeei_contig12900:265..4331683185965.823598-CDS-P-wetherbeei_contig12900:265..433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12900 266..433 -
1683185965.8321476-CDS-P-wetherbeei_contig12900:735..8161683185965.8321476-CDS-P-wetherbeei_contig12900:735..816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12900 736..816 -
1683185965.8407235-CDS-P-wetherbeei_contig12900:1016..14661683185965.8407235-CDS-P-wetherbeei_contig12900:1016..1466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12900 1017..1466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12900.1.1prot_P-wetherbeei_contig12900.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12900 266..1466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12900.1.1

>prot_P-wetherbeei_contig12900.1.1 ID=prot_P-wetherbeei_contig12900.1.1|Name=mRNA_P-wetherbeei_contig12900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
MGRERNVPLSQRTGRGRHFNDDDVCKFFLAGLCPYVLFSNTKSDLGDHPN
REEDNEDLKAAYDALPEAEKSRYTYDRDLMAFLEDLVSGCDRKVERNRVR
VDAENADAGIDNAKVQQLVEIDKQIREKTAESEKVAEEGEVDEAQQLLTQ
VEALRREKAMIEKSATSKSAKRNVVCEVSGNIMSSSDNEERIRCHFEGKQ
YLGWKACREKLEDLRKKLSVPSASGGNSAAHR*
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mRNA from alignment at P-wetherbeei_contig12900:2..1484-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12900.1.1 ID=mRNA_P-wetherbeei_contig12900.1.1|Name=mRNA_P-wetherbeei_contig12900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1483bp|location=Sequence derived from alignment at P-wetherbeei_contig12900:2..1484- (Phaeothamnion wetherbeei SAG_119_79)
GCATTGCTCGACCAGCTGATGGGCAGGGAGCGCAACGTGCCGCTCAGCCA ACGAACAGGCCGAGGCAGGCACTTTAACGACGACGATGTTTGCAAGTTCT TCCTGGCGGGCCTCTGCCCGTACGTCCTCTTCAGCAATACGAAAAGCGAC CTTGGTGATCATCCAAACCGCGAGGAAGACAACGAAGATCTGAAGGCAGC GTACGACGCGCTGCCCGAGGCGGAGAAGAGCCGCTACACGTACGATCGCG ACCTGATGGCATTCCTCGAGGACCTCGTGAGCGGCTGCGACCGCAAGGTC GAGCGCAACCGGGTGCGCGTGGATGCGGAGAATGCCGACGCGGGCATCGA CAATGCGAAGGTGCAGCAGCTGGTGGAGATCGATAAGCAGATCCGCGAAA AGACCGCAGAGAGTGAGAAGGTCGCGGAGGAGGGCGAGGTCGACGAGGCG CAGCAGCTCTTGACGCAGGTAAGAAACGGCTCCTCTTCTATACATTTCTT GTTTCTCGTTCCGTATTCTTGACGCCTTTGCCGGCCTTTTTCTGCGTCAA AATTTTCGGCTTGGGTTGTGCTGCTGATTCTTGCGGATTGAAAAACGGAT TATTACATCTCTCTGATTTATTCTCTCGCCGCGCCCCGCTGTTCACCCGC GTTGCCGTCCTTGGTTAGGTGGAAGCTCTCCGGAGGGAAAAGGCCATGAT CGAGAAAAGCGCGACGTCAAAGTCCGCCAAGCGCAACGTCGTCTGCGAGG TGAAGCAACGCGTCCTGCTTTTTGATTGGTGACAGGCGCAAAGCGATCGC CAGATGCGGCAAGATCGCTTTGGGAACGAGGCTAGCAGTATTTGGAAAAG CTATGAGATTTTTCTGAGTTCCTCTTCACCAATTTCTGCGGGCGCACGAA CAGACATTCTCGCTCCGTTTTCTATCTTCTTCCTGCGGCCGGTCGGCACG TGGTGGCGCGTCTTCCCCTGAATTTAAGCCGTCGCCGCCGCCGCCGCCGC CGTTGCCCACCGCCGCCGCCGCCGTTGCCCGCCGCCGCCACCACATCGCA GGTGAGTGGGAACATAATGAGCTCAAGCGACAACGAGGAGCGCATCCGCT GCCACTTCGAGGGAAAGCAGTACCTGGGCTGGAAAGCGTGCCGCGAGAAG CTCGAGGACCTCCGGAAGAAGCTCAGTGTGCCGTCCGCCTCTGGCGGCAA CTCCGCCGCCCACAGGTGAGTTCGTTTTCCCGTTTCGTCCCTCAGTTAGT GCCCCGTCAATGTCCATCCCAGGCTCCAGTCCGTTTCATTTTTCGTCTGT TTGCACGTATGCGGGCCCTTTGAGCTCTTTCGAAAACCTCCCGGGATTAG CGATGTGTCTCGAGACGACGGAAACACCGATGGATGGCGCACGCATCGTG AGAAATCTTTCGAACCTGTTATTAAAACCCGTCCCCTCGGTTCCCTCCAT CCCACCACTTTTGGTCCGTTGCTCTTTCCTCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12900:2..1484-

>mRNA_P-wetherbeei_contig12900.1.1 ID=mRNA_P-wetherbeei_contig12900.1.1|Name=mRNA_P-wetherbeei_contig12900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig12900:2..1484- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAGGGAGCGCAACGTGCCGCTCAGCCAACGAACAGGCCGAGGCAG
GCACTTTAACGACGACGATGTTTGCAAGTTCTTCCTGGCGGGCCTCTGCC
CGTACGTCCTCTTCAGCAATACGAAAAGCGACCTTGGTGATCATCCAAAC
CGCGAGGAAGACAACGAAGATCTGAAGGCAGCGTACGACGCGCTGCCCGA
GGCGGAGAAGAGCCGCTACACGTACGATCGCGACCTGATGGCATTCCTCG
AGGACCTCGTGAGCGGCTGCGACCGCAAGGTCGAGCGCAACCGGGTGCGC
GTGGATGCGGAGAATGCCGACGCGGGCATCGACAATGCGAAGGTGCAGCA
GCTGGTGGAGATCGATAAGCAGATCCGCGAAAAGACCGCAGAGAGTGAGA
AGGTCGCGGAGGAGGGCGAGGTCGACGAGGCGCAGCAGCTCTTGACGCAG
GTGGAAGCTCTCCGGAGGGAAAAGGCCATGATCGAGAAAAGCGCGACGTC
AAAGTCCGCCAAGCGCAACGTCGTCTGCGAGGTGAGTGGGAACATAATGA
GCTCAAGCGACAACGAGGAGCGCATCCGCTGCCACTTCGAGGGAAAGCAG
TACCTGGGCTGGAAAGCGTGCCGCGAGAAGCTCGAGGACCTCCGGAAGAA
GCTCAGTGTGCCGTCCGCCTCTGGCGGCAACTCCGCCGCCCACAGGTGA
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