mRNA_P-wetherbeei_contig1275.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1275.1.1
Unique NamemRNA_P-wetherbeei_contig1275.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Match: A0A353LPC3_9PROT (Histidine kinase n=6 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LPC3_9PROT)

HSP 1 Score: 265 bits (676), Expect = 3.760e-80
Identity = 170/441 (38.55%), Postives = 252/441 (57.14%), Query Frame = 1
Query:    1 LTMLFAILAGIVEWNYLALQDVVSGVEWISLITIEIGLGAVLLILIVV---PAEYVDKL--ALAAFTGAIF-----YIFSMLLAAIFIDRDVARSLHAVLWFHPAFIAVSLTQPLKLAQ--SMCWLVVALLAGVILYCGMTLEDVLHTTAFINHVLILLSLCASASLLYALSRYRQEQGANRARIEVLNETAGLLRAEVAAKEKARSELEQANRIISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDSGQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKDVADGQGVLAARVGVKVIVDAPGKPT--LTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGADGACVITIKDEDAGIPQDELEQIFTPFRKGRHSEDKAIAGTGMGLAMAKMLVDLHDGLISIASREGEGTTVTLVFP 1281
            LT+  A L G+VEW YLA+    + +E+I+L   E+     + +  +      E  D+   AL   T  IF     YI  M+   +F +    R+LH  LW HPA IA++LTQ  + A    +  ++VA+L+ V     +  + + H T  ++ V + LS+CAS +LLY L+  R+E+GA RA + ++ ET   LR      ++A++  EQ N+ ++ FL+N+SHELRTPLN +IGFSE+IRDE+FGAH++ +YK+YA DI  SG HLLGLVN+LL++S+L+ G++T      D  +LL ++AD         G+ + VD    P   +  D   + ++L  L++N IKFS     I L     AD  C I + D   GI + E E I   FR+G  S+  A+ GTG+GLAM KMLVD+ DG+I   +    GTTV +  P
Sbjct:   35 LTLGCAALGGMVEWWYLAVTGQATFIEYIALAATELSFLTFITLGFLRFRNSRESFDQAINALQWMTFTIFWLAALYILVMVGGTLFSNGVPGRALHTALWIHPALIAMALTQSPQTAWRLGLVAVLVAVLSSVAFAFALDTDGMPHVTV-VSFVQLSLSVCASTALLYVLAALREERGATRAELALMEETQHELRRSAELAQEAQAAAEQMNKSMTAFLNNISHELRTPLNGIIGFSEIIRDEMFGAHASPQYKDYAGDIAGSGAHLLGLVNDLLFFSQLNAGRVTITPEPFDIYSLLNEIADSYATQTEDAGLTIKVDEAANPDYFINLDTVVIRQILRNLISNGIKFSHAGGVITLGYRMLADNHCEIWVSDTGIGISEKEQENILQLFRRGAESDRNAVPGTGLGLAMVKMLVDMQDGIIDFETGGKCGTTVRITLP 474          
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Match: A0A3C0TXM1_9PROT (Histidine kinase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXM1_9PROT)

HSP 1 Score: 255 bits (652), Expect = 1.460e-79
Identity = 133/245 (54.29%), Postives = 172/245 (70.20%), Query Frame = 1
Query:  547 LRAEVAAKEKARSELEQANRIISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDSGQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKDVADGQGVLAARVGVKVIVDAPGKPTLTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGADGACVITIKDEDAGIPQDELEQIFTPFRKGRHSEDKAIAGTGMGLAMAKMLVDLHDGLISIASREGEGTTVTLVFP 1281
            +R EV AKE+A  ELE+AN ++S FLDN+SHELRTPLNA+IGFSELI  EL G  +N+KYKEY+ DIL SGQH+L LVNNLLY+++LS G+I      + A  +L   A+     A    V+++V+  G+P L AD  GLLR+LH LL+NAIKFS P  E++L+A  G DGAC I I+D   GIPQ EL+ +  PFR+G  S  KA  GTG+GL++AK+ +D H G I I S E +GT VTL+FP
Sbjct:    1 MREEVEAKEQALRELERANMVVSDFLDNISHELRTPLNAIIGFSELIHGELLGGLANEKYKEYSGDILQSGQHMLELVNNLLYFTRLSAGRIELKRDNVVACEVLNSAAEASRRQANEADVRIVVEEDGQPLLHADMAGLLRILHNLLDNAIKFSWPGGEVLLKAVTGRDGACEICIRDNGVGIPQTELDTVLLPFRRGEGSARKATPGTGLGLSLAKVFMDQHGGSIFIDSAEDKGTLVTLLFP 245          
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Match: A0A3D4MGM2_9PROT (Histidine kinase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D4MGM2_9PROT)

HSP 1 Score: 187 bits (474), Expect = 3.160e-50
Identity = 105/242 (43.39%), Postives = 150/242 (61.98%), Query Frame = 1
Query:  574 KARSELEQANRIISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDSGQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKDVADGQGVL------AARVGVKVIVDAPGKPTLTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGADGACVITIKDEDAGIPQDELEQIFTPFRKGRHSEDKAIAGTGMGLAMAKMLVDLHDGLISIASREGEGTTVTLVFP 1281
            +A+ + + ANR  S FL NMSHELR PLNA+IGFSE+I++E FGA SN KY+EY  DI  S +HLL ++N++L  SK+  GK+      ++ E  + DV    G +      AA+VG++  + A   P +  D   L ++L  L++NA+KFS P  ++ + A    D + VI I D  AGIP+D+L  +  PF +          GTG+GL +AK +V+LHDG IS++SREG GTTVT+ FP
Sbjct:  269 RAKQDADVANRAKSSFLANMSHELRNPLNAIIGFSEMIKNETFGAISNPKYEEYIGDIHFSARHLLDIINDVLDMSKIEAGKVN----LMETEVAVDDVMRSVGRIMLPRAQAAQVGLRTDIPAD-LPFIKGDQRLLRQILINLVSNAVKFSPPGTDVAVSARISNDNSLVIEIADHGAGIPEDKLRYVMEPFGQVGDPRSYKGQGTGLGLPLAKAMVELHDGHISLSSREGMGTTVTMSFP 505          
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Match: A0A257WWG6_9CAUL (Histidine kinase (Fragment) n=2 Tax=unclassified Caulobacter TaxID=2648921 RepID=A0A257WWG6_9CAUL)

HSP 1 Score: 180 bits (456), Expect = 1.600e-48
Identity = 103/263 (39.16%), Postives = 158/263 (60.08%), Query Frame = 1
Query:  520 EVLNETAGLLRAEVAAKEKARS------ELEQANRIISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDSGQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKDVADGQGVLAARVGVKVIVDAPGKPTLTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGAD--GACV-ITIKDEDAGIPQDELEQIFTPFRKGRHSEDKAIAGTGMGLAMAKMLVDLHDGLISIASREGEGTTVTLVFP 1281
            ++ N  AGL R++    E AR       + E AN+  S FL NMSHELRTPLNA+ GFSE++ +E+FG   +Q+YK Y+ DI +SGQHLL L+N++L  SK+  GK+   F  L+ E + +D        A   G+K+++D P  P + AD+  + ++L  LL+NAIKF+     + ++A    D  G  V ++++D   GI +D+L ++  PF +      K   GTG+GLA+ K L+++HDG + + S  GEGTTV+ + P
Sbjct:  141 QLQNAVAGLERSQEQLAELARKYEMEKVKAEGANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGQLGDQRYKGYSQDIHNSGQHLLALINDILDMSKIEAGKMNLKFEPLNLEDVAEDAVRLVRNRAEAAGLKLVIDFPQLPEIEADYRAVKQVLLNLLSNAIKFTPRAGSVTIRAEVRRDPLGERVRVSVQDTGIGIAKDDLARLARPFEQVESQLSKTTQGTGLGLALTKSLIEMHDGSLEMTSTPGEGTTVSFILP 403          
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Match: A0A081B6T5_9HYPH (Histidine kinase n=2 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081B6T5_9HYPH)

HSP 1 Score: 182 bits (462), Expect = 1.910e-48
Identity = 132/390 (33.85%), Postives = 208/390 (53.33%), Query Frame = 1
Query:  151 EYVDKLALAAFTGAIFYIFSMLLAAIFIDRDVARSLHAVLWFHPAFIAVSLTQPLKLAQSMCWLVVALLAGV----ILYCGMTLEDVLHTTAFINHVLILLSLCASASLLYALSRYRQEQGANRARIEVLNETAGLL-----RAEVAAK--EKARSELEQANRIISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDSGQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKDVADGQGVLA-ARVGVKVIVDAPGKPTLTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGADGACVITIKDEDAGIPQDELEQIFTPF-RKGRHSEDKAIAGTGMGLAMAKMLVDLHDGLISIASREGEGTTVTLVFP 1281
            +++ ++    + G + YI +  L ++         +H   W   A++    TQP+K AQ MCW   A L  V    ++Y G  +     T  F++   I+ S  A+ ++LY LS +RQEQ A+R R +V    +  +     +A+ A +  E+ARS  E A R+   F+ N+SHELRTPLNA++GF+E+I  E +GAHS+ +Y EYA DI  SG+HLLGL+N +L +S++  G+I       DA  ++ +       LA A+  + V  +      LT D   L +++  L++NAIKF+      +    EG+D    +T+ D   G+ +D   ++FTPF R  R   D    GTG+GLA+ K LV+   G I + S+ G G+T  +  P
Sbjct:  112 QHIPRVIFWLYWGIMAYIGAGFLNSLSQGLGTDYGIHFAAWAVIAYLIAVATQPVKRAQIMCWSGFASLCAVSVFFLVYSGANILTDPQTVTFVS---IMGSQAAAIAVLYVLSVFRQEQLADRQRAKVWQHASEEMIRYAQQADRARRDAEEARSSAEAAMRMRDRFVANISHELRTPLNAILGFAEVIERETYGAHSDGRYGEYAGDIRRSGRHLLGLINQILDFSRMEAGEINLKLEQADAREVVSESLRLIAPLAEAKPDISVQFEPGPSIPLTTDTQALRQIVTNLVSNAIKFTDRGYVDVRLNEEGSD-MLTLTVTDTGCGLSEDARRRVFTPFYRVARQGSDAG--GTGLGLAIVKSLVEGLGGTIDVESQPGRGSTFQIRLP 495          
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Match: A0A0Q7SW26_9CAUL (Histidine kinase n=3 Tax=unclassified Brevundimonas TaxID=2622653 RepID=A0A0Q7SW26_9CAUL)

HSP 1 Score: 185 bits (469), Expect = 6.270e-48
Identity = 94/237 (39.66%), Postives = 145/237 (61.18%), Query Frame = 1
Query:  571 EKARSELEQANRIISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDSGQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKDVADGQGVLAARVGVKVIVDAPGKPTLTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGADGACVITIKDEDAGIPQDELEQIFTPFRKGRHSEDKAIAGTGMGLAMAKMLVDLHDGLISIASREGEGTTVTLVFP 1281
            E A +  E AN+  S FL NMSHELRTPLNA+ GFSE++  E+FG   + +YK YAADIL SGQHLL L+N++L  +K+  GK+T  +  +  + +++D            G+ ++VDAP  P + AD+ GL +++  L++NA+KF+    +I++  +   D    + + D   GI + +L+++  PF +      K   GTG+GLA+ K L++LH G+++IAS  G GTTV  V P
Sbjct:  552 EVAMTRAEAANQAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGDARYKGYAADILKSGQHLLSLINDILDMAKIEAGKLTLHYEKVSLKEVVEDATRLMRGKIQEAGLNLLVDAPEMPEIDADYRGLKQVVLNLISNAVKFTPEGGDIVVALSREDDDRVRVAVTDTGIGIAEKDLDRLARPFEQVEGQHSKTTQGTGLGLALTKSLIELHGGVLTIASEPGRGTTVGFVLP 788          
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Match: UPI001469EA5E (ATP-binding protein n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI001469EA5E)

HSP 1 Score: 177 bits (450), Expect = 7.760e-48
Identity = 99/238 (41.60%), Postives = 140/238 (58.82%), Query Frame = 1
Query:  571 EKARSELEQANRIISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDSGQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKDVADGQGVLAARVGVKVIVDAPGK-PTLTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGADGACVITIKDEDAGIPQDELEQIFTPFRKGRHSEDKAIAGTGMGLAMAKMLVDLHDGLISIASREGEGTTVTLVFP 1281
            E +    E A R+ S FL NMSHELRTPLNAVIGFSELI  + FG     +Y +Y  DIL+SG+HLL ++N++L  SK+  G+ T D   +D   +++ V    GVLA+R GV++  D P + P L  D   + ++L  L++N +K++     + L+     DG+  + I D   GIP++EL  I  PF +  ++      GTG+GLA+ K L DLHD  I + S  G GTTV L FP
Sbjct:  151 EISNERAEHAARVKSQFLANMSHELRTPLNAVIGFSELIVSKAFGEIEPPRYGQYVVDILESGRHLLSMINDILDMSKIEAGRYTVDERQIDLCHVIRTVCKMCGVLASRKGVQIQCDMPAEGPILIGDERAIKQMLLNLVSNGVKYTERGGAVTLRGHSQPDGSVSLEIIDTGIGIPEEELPGIMEPFVQAGNNRTSKDEGTGLGLAIVKALADLHDTRIDMKSAVGVGTTVILTFP 388          
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Match: UPI001A963E39 (ATP-binding protein n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A963E39)

HSP 1 Score: 182 bits (463), Expect = 1.980e-47
Identity = 102/244 (41.80%), Postives = 150/244 (61.48%), Query Frame = 1
Query:  574 KARSELEQANRIISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDSGQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKD--------VADGQGVLAARVGVKVIVDAPGKPTLTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGADGACVITIKDEDAGIPQDELEQIFTPFRKGRHSEDKAIAGTGMGLAMAKMLVDLHDGLISIASREGEGTTVTLVFP 1281
            +A+ + E ANR  S FL +MSHELRTPLNAVIGFSE+I+DELFG + N +Y+EYA DI DSG+HLL L+N +L  +K+  G +      ++ E +L+          A GQ VL   +G +     PG P L  D   L ++L  LL+NA+KF+ P  E+ L+A    DG  V+T+ D   G+ +++L+  F PFR+  ++ ++   GTG+GL ++K L +LH G ++I S  G+GT V +  P
Sbjct:  470 EAKEQAELANRTKSEFLAHMSHELRTPLNAVIGFSEIIKDELFGPNHNPRYQEYARDIHDSGRHLLTLINEILDLAKVEAGGVELREETIEVEKVLESCRRLVRERAAAGQIVL--NIGAE-----PGLPRLLVDVTRLKQILLNLLSNAVKFTTPGGEVRLEARRAQDGGVVLTVADTGIGMSEEQLDIAFQPFRQVENAFNRKYQGTGLGLPLSKALAELHGGSVTIESEPGKGTRVRVWLP 706          
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Match: A0A2A4RYR1_9HYPH (Histidine kinase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4RYR1_9HYPH)

HSP 1 Score: 180 bits (456), Expect = 8.960e-47
Identity = 103/242 (42.56%), Postives = 150/242 (61.98%), Query Frame = 1
Query:  571 EKARSELEQANRIISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDSGQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKD---VADGQGVLAARVGVKVIVDAPGKPTLTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGAD--GACVITIKDEDAGIPQDELEQIFTPFRKGRHSEDKAIAGTGMGLAMAKMLVDLHDGLISIASREGEGTTVTLVFP 1281
            EK R+E   ANR  S FL NMSHELRTPLNA+IGFSE++  E FG   N KYKEY+ DI DSGQHLL ++N++L  SK+  G++T + V L+ E+L ++   +  G+  +A   GV++       P L AD   + ++L  LL+NA+KF+    +I L+A    D  G   I +KD   GIP D L ++  PF +  +   K   GTG+GLA+++ L+++H+G++ I S EG GT V+ + P
Sbjct:  409 EKTRAET--ANRSKSEFLANMSHELRTPLNAIIGFSEMMNGEFFGPLGNAKYKEYSQDIHDSGQHLLDVINDILDMSKIEAGRLTLEPVNLELESLAEESLRLISGRAEVA---GVRINNQIKDFPLLLADKRAVKQVLINLLSNAVKFTPAGGDITLKAEPYNDHPGWARIIVKDSGIGIPADALPKLGRPFEQVENQHSKTYNGTGLGLALSRSLIEMHEGILIIESEEGIGTEVSFILP 645          
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Match: UPI001BBE5C17 (Ammonium transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=UPI001BBE5C17)

HSP 1 Score: 180 bits (457), Expect = 1.320e-46
Identity = 102/253 (40.32%), Postives = 148/253 (58.50%), Query Frame = 1
Query:  526 LNETAGLLRAEVAAKEKARSELEQANRIISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDSGQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKDVADGQGVLAARVGVKVIVDAPGK-PTLTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGADGACVITIKDEDAGIPQDELEQIFTPFRKGRHSEDKAIAGTGMGLAMAKMLVDLHDGLISIASREGEGTTVTLVFP 1281
            +N  A  LR  +   ++A+   E+A+   S FL NMSHELRTPLNAVIGFSE++ +ELFG   + +YKEYA+DIL SG+HLL LVN+LL ++++  G++  +   LD +  ++         AA   V +    P   P L AD     ++L  LL NA+KF+ P   + L A    DG   I + D   G+ ++E+ +   PF +  H  +K+  GTG+GL + + L+ LH G I+I S EG GTTVT+ FP
Sbjct:  447 VNRDADALRRAIEDLKRAKQAAEEASNAKSAFLANMSHELRTPLNAVIGFSEILTNELFGQLGDPRYKEYASDILASGRHLLSLVNDLLDHTRIEAGRMELNVAELDVQEQIEAAMRLMRERAATASVTLQASFPDLLPYLMADERAFRQMLLNLLGNAVKFTPPGGSVTLSADLEGDGRLAIQVSDTGIGMKREEVPRALEPFVQLHHHMNKSYGGTGLGLPLVQALMRLHGGSITIDSAEGNGTTVTIRFP 699          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1275.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353LPC3_9PROT3.760e-8038.55Histidine kinase n=6 Tax=Alphaproteobacteria bacte... [more]
A0A3C0TXM1_9PROT1.460e-7954.29Histidine kinase n=1 Tax=Alphaproteobacteria bacte... [more]
A0A3D4MGM2_9PROT3.160e-5043.39Histidine kinase n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A257WWG6_9CAUL1.600e-4839.16Histidine kinase (Fragment) n=2 Tax=unclassified C... [more]
A0A081B6T5_9HYPH1.910e-4833.85Histidine kinase n=2 Tax=Tepidicaulis marinus TaxI... [more]
A0A0Q7SW26_9CAUL6.270e-4839.66Histidine kinase n=3 Tax=unclassified Brevundimona... [more]
UPI001469EA5E7.760e-4841.60ATP-binding protein n=1 Tax=Sneathiella chinensis ... [more]
UPI001A963E391.980e-4741.80ATP-binding protein n=1 Tax=Arenibaculum pallidilu... [more]
A0A2A4RYR1_9HYPH8.960e-4742.56Histidine kinase n=1 Tax=Rhodobiaceae bacterium Ta... [more]
UPI001BBE5C171.320e-4640.32Ammonium transporter n=1 Tax=Alphaproteobacteria b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1275contigP-wetherbeei_contig1275:2272..3552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1333998.M2A_0252
PFAMsHATPase_c,HisKA,PAS_3
Model size1281
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.98e-49
EggNOG OGsCOG0642@1|root,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TRHH@28211|Alphaproteobacteria
DescriptionHistidine kinase
Cds size1275
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.6874824-CDS-P-wetherbeei_contig1275:2271..35461683185959.6874824-CDS-P-wetherbeei_contig1275:2271..3546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1275 2272..3546 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.7002144-UTR-P-wetherbeei_contig1275:3546..35521683185959.7002144-UTR-P-wetherbeei_contig1275:3546..3552Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1275 3547..3552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1275.1.1prot_P-wetherbeei_contig1275.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1275 2272..3546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1275.1.1

>prot_P-wetherbeei_contig1275.1.1 ID=prot_P-wetherbeei_contig1275.1.1|Name=mRNA_P-wetherbeei_contig1275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=425bp
MLFAILAGIVEWNYLALQDVVSGVEWISLITIEIGLGAVLLILIVVPAEY
VDKLALAAFTGAIFYIFSMLLAAIFIDRDVARSLHAVLWFHPAFIAVSLT
QPLKLAQSMCWLVVALLAGVILYCGMTLEDVLHTTAFINHVLILLSLCAS
ASLLYALSRYRQEQGANRARIEVLNETAGLLRAEVAAKEKARSELEQANR
IISGFLDNMSHELRTPLNAVIGFSELIRDELFGAHSNQKYKEYAADILDS
GQHLLGLVNNLLYYSKLSVGKITPDFVALDAEALLKDVADGQGVLAARVG
VKVIVDAPGKPTLTADHNGLLRLLHGLLNNAIKFSRPDDEIILQAAEGAD
GACVITIKDEDAGIPQDELEQIFTPFRKGRHSEDKAIAGTGMGLAMAKML
VDLHDGLISIASREGEGTTVTLVFP
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mRNA from alignment at P-wetherbeei_contig1275:2272..3552-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1275.1.1 ID=mRNA_P-wetherbeei_contig1275.1.1|Name=mRNA_P-wetherbeei_contig1275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1281bp|location=Sequence derived from alignment at P-wetherbeei_contig1275:2272..3552- (Phaeothamnion wetherbeei SAG_119_79)
CTGACCATGCTGTTCGCGATATTGGCGGGCATCGTTGAATGGAATTATCT GGCGTTGCAGGATGTTGTTTCAGGCGTTGAGTGGATTTCGCTCATTACGA TTGAAATTGGCTTGGGCGCGGTGCTGCTTATTCTGATTGTTGTGCCAGCT GAATATGTTGATAAACTTGCGCTGGCGGCTTTTACCGGCGCAATTTTCTA TATTTTTTCAATGCTGCTTGCTGCAATTTTTATTGATCGTGATGTTGCGC GCAGCCTGCACGCGGTATTGTGGTTTCACCCGGCCTTTATTGCCGTTTCC CTGACGCAGCCGCTTAAACTGGCGCAGTCCATGTGCTGGCTGGTTGTTGC GCTGCTGGCGGGCGTGATCCTTTATTGCGGTATGACCCTGGAGGATGTTC TCCACACCACGGCCTTTATAAACCATGTGCTGATTTTGCTGTCACTTTGC GCGTCGGCGTCCCTGCTTTATGCTCTGTCGCGCTACCGTCAGGAACAGGG CGCCAACCGGGCGCGCATTGAAGTGCTGAATGAAACAGCCGGCCTGCTGC GTGCAGAAGTGGCGGCCAAAGAAAAAGCCAGATCAGAGCTTGAGCAGGCC AACCGGATTATCAGCGGTTTCCTGGATAATATGAGCCATGAATTGCGTAC CCCGCTGAATGCGGTGATCGGGTTTTCTGAATTGATCCGCGACGAATTAT TTGGCGCGCACAGCAATCAGAAATACAAGGAATATGCCGCAGACATTCTG GATAGCGGCCAGCATTTGCTCGGTTTGGTGAATAATTTATTATATTATTC AAAACTCAGCGTTGGAAAAATCACCCCTGATTTTGTTGCACTGGATGCAG AAGCCTTGCTGAAAGATGTGGCCGATGGGCAGGGGGTTCTTGCTGCCCGG GTCGGGGTGAAGGTGATTGTTGATGCACCGGGAAAGCCAACCTTGACGGC GGATCACAACGGACTGCTGCGTCTTCTGCATGGTTTACTGAACAATGCGA TCAAGTTTTCCAGACCCGATGATGAGATTATTTTGCAGGCGGCGGAAGGC GCGGACGGGGCTTGTGTAATTACAATAAAAGATGAAGACGCCGGCATTCC GCAGGACGAACTGGAGCAAATTTTTACGCCCTTCCGCAAAGGCAGGCACA GCGAGGACAAAGCCATTGCAGGCACCGGCATGGGACTGGCCATGGCCAAA ATGCTGGTTGACTTGCATGACGGCTTAATCTCGATCGCCAGCAGAGAAGG CGAAGGAACAACCGTCACATTGGTTTTCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1275:2272..3552-

>mRNA_P-wetherbeei_contig1275.1.1 ID=mRNA_P-wetherbeei_contig1275.1.1|Name=mRNA_P-wetherbeei_contig1275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1275bp|location=Sequence derived from alignment at P-wetherbeei_contig1275:2272..3552- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTTCGCGATATTGGCGGGCATCGTTGAATGGAATTATCTGGCGTT
GCAGGATGTTGTTTCAGGCGTTGAGTGGATTTCGCTCATTACGATTGAAA
TTGGCTTGGGCGCGGTGCTGCTTATTCTGATTGTTGTGCCAGCTGAATAT
GTTGATAAACTTGCGCTGGCGGCTTTTACCGGCGCAATTTTCTATATTTT
TTCAATGCTGCTTGCTGCAATTTTTATTGATCGTGATGTTGCGCGCAGCC
TGCACGCGGTATTGTGGTTTCACCCGGCCTTTATTGCCGTTTCCCTGACG
CAGCCGCTTAAACTGGCGCAGTCCATGTGCTGGCTGGTTGTTGCGCTGCT
GGCGGGCGTGATCCTTTATTGCGGTATGACCCTGGAGGATGTTCTCCACA
CCACGGCCTTTATAAACCATGTGCTGATTTTGCTGTCACTTTGCGCGTCG
GCGTCCCTGCTTTATGCTCTGTCGCGCTACCGTCAGGAACAGGGCGCCAA
CCGGGCGCGCATTGAAGTGCTGAATGAAACAGCCGGCCTGCTGCGTGCAG
AAGTGGCGGCCAAAGAAAAAGCCAGATCAGAGCTTGAGCAGGCCAACCGG
ATTATCAGCGGTTTCCTGGATAATATGAGCCATGAATTGCGTACCCCGCT
GAATGCGGTGATCGGGTTTTCTGAATTGATCCGCGACGAATTATTTGGCG
CGCACAGCAATCAGAAATACAAGGAATATGCCGCAGACATTCTGGATAGC
GGCCAGCATTTGCTCGGTTTGGTGAATAATTTATTATATTATTCAAAACT
CAGCGTTGGAAAAATCACCCCTGATTTTGTTGCACTGGATGCAGAAGCCT
TGCTGAAAGATGTGGCCGATGGGCAGGGGGTTCTTGCTGCCCGGGTCGGG
GTGAAGGTGATTGTTGATGCACCGGGAAAGCCAACCTTGACGGCGGATCA
CAACGGACTGCTGCGTCTTCTGCATGGTTTACTGAACAATGCGATCAAGT
TTTCCAGACCCGATGATGAGATTATTTTGCAGGCGGCGGAAGGCGCGGAC
GGGGCTTGTGTAATTACAATAAAAGATGAAGACGCCGGCATTCCGCAGGA
CGAACTGGAGCAAATTTTTACGCCCTTCCGCAAAGGCAGGCACAGCGAGG
ACAAAGCCATTGCAGGCACCGGCATGGGACTGGCCATGGCCAAAATGCTG
GTTGACTTGCATGACGGCTTAATCTCGATCGCCAGCAGAGAAGGCGAAGG
AACAACCGTCACATTGGTTTTCCCG
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