mRNA_P-wetherbeei_contig12709.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12709.2.1
Unique NamemRNA_P-wetherbeei_contig12709.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Match: A0A3C2B6N5_9ACTN (Ribonuclease 3 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B6N5_9ACTN)

HSP 1 Score: 207 bits (526), Expect = 5.490e-65
Identity = 106/142 (74.65%), Postives = 125/142 (88.03%), Query Frame = 1
Query:    1 VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYLDGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYVITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAAAEQA 426
            VNASALAEVAVEI +G CLLLGKGE++AGGR KPSILSDA EAVLGA+YLDGG +AAA ++++LF +R+A A  RLDRLDYKT+LQE+TAR +DTAPVYVI+D+GPDH K FFATV+V GQ +G GEG+SKK AEQAAAEQA
Sbjct:   84 VNASALAEVAVEIGIGPCLLLGKGESAAGGRSKPSILSDAFEAVLGAVYLDGGAEAAATMVERLFAQRMASAALRLDRLDYKTVLQELTARRFDTAPVYVISDSGPDHEKRFFATVIVAGQTVGKGEGRSKKLAEQAAAEQA 225          
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Match: A0A7X9KJV6_9ACTN (Ribonuclease 3 n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KJV6_9ACTN)

HSP 1 Score: 202 bits (514), Expect = 5.430e-63
Identity = 105/142 (73.94%), Postives = 126/142 (88.73%), Query Frame = 1
Query:    1 VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYLDGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYVITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAAAEQA 426
            VNASALAEVA+EI LG C+LLGKGE +AGGR KPSILSDA EAVLGA+YLDGG  AA  ++++LFT+R+A A  RLDRLD+KT+LQE+TARL+DTAPVYV++D+GPDH K FFATV+V GQ++G GEG+SKKTAEQAAAEQA
Sbjct:   82 VNASALAEVALEIRLGDCILLGKGEDAAGGRSKPSILSDAFEAVLGAVYLDGGPPAAFGLVERLFTDRMATAALRLDRLDFKTVLQELTARLHDTAPVYVLSDSGPDHDKRFFATVIVAGQSVGYGEGRSKKTAEQAAAEQA 223          
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Match: A0A7K1B556_9ACTN (Ribonuclease 3 n=2 Tax=root TaxID=1 RepID=A0A7K1B556_9ACTN)

HSP 1 Score: 200 bits (509), Expect = 4.910e-62
Identity = 108/148 (72.97%), Postives = 128/148 (86.49%), Query Frame = 1
Query:    1 VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYLDGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYVITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAAAEQACDALAA 444
            VNASALAEVAV IDLG CLLLGKGE++AGGRMKPSILSDALEAV+GA+YLDGGV AAA +I+ LFTE L +A Q+LDRLD+KTLLQE+TAR++DTAPVYVI++TGPDH K F A V+VGG+++G G G+SKK AEQAAA  A   L+A
Sbjct:  114 VNASALAEVAVGIDLGPCLLLGKGESAAGGRMKPSILSDALEAVIGAVYLDGGVVAAARLIEHLFTEPLQRAAQQLDRLDHKTLLQELTARMFDTAPVYVISETGPDHQKTFTAGVVVGGRSVGQGTGRSKKLAEQAAALAAYTLLSA 261          
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Match: A0A6I3EVJ5_9ACTN (Ribonuclease 3 n=2 Tax=root TaxID=1 RepID=A0A6I3EVJ5_9ACTN)

HSP 1 Score: 194 bits (493), Expect = 8.520e-60
Identity = 101/146 (69.18%), Postives = 121/146 (82.88%), Query Frame = 1
Query:    1 VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYLDGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYVITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAAAEQACDAL 438
            VNAS LAE+A+EI +G CLLLGKGE +AGGR KPSILSDALEAVLGA+YLDGG  AA  ++++L   R+  A  RLDRLDYKT+LQE+TAR+YD+APVYV++++GPDH K FFATV+V G  LG GEG+SKK AEQAAAEQA  AL
Sbjct:   98 VNASTLAEIALEIGIGECLLLGKGEDAAGGRTKPSILSDALEAVLGAVYLDGGTAAAFALVERLVAHRMTSAALRLDRLDYKTVLQELTARVYDSAPVYVLSESGPDHQKQFFATVIVDGDTLGKGEGRSKKIAEQAAAEQAWMAL 243          
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Match: A0A6I3X516_9ACTN (Ribonuclease 3 n=2 Tax=root TaxID=1 RepID=A0A6I3X516_9ACTN)

HSP 1 Score: 190 bits (482), Expect = 3.500e-58
Identity = 98/148 (66.22%), Postives = 120/148 (81.08%), Query Frame = 1
Query:    1 VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYLDGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYVITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAAAEQACDALAA 444
            VNA+ALA+VA  +D+G+CLLLGKGE++AGGR KPSILSDA EAVLGAIYLD G  AA   ++++  ERL QAVQ+L RLDYKTLLQE+  R +D APVYV+ + GPDHAKHF+ATV++ G+  G+GEG SKK AEQ AA  ACD+LAA
Sbjct:   95 VNAAALADVAAGLDIGSCLLLGKGESAAGGRSKPSILSDAFEAVLGAIYLDAGTTAAYAFVERVIGERLRQAVQQLHRLDYKTLLQELAVREFDAAPVYVLREEGPDHAKHFYATVLIAGRPWGEGEGSSKKQAEQVAAMVACDSLAA 242          
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Match: A0A6I3CAT3_9ACTN (Ribonuclease 3 n=2 Tax=root TaxID=1 RepID=A0A6I3CAT3_9ACTN)

HSP 1 Score: 186 bits (471), Expect = 4.920e-57
Identity = 99/148 (66.89%), Postives = 119/148 (80.41%), Query Frame = 1
Query:    1 VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYLDGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYVITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAAAEQACDALAA 444
            VNA+ALA +AVE+D+G+CLLLGKGE+ AGGR KPSILSDALEAVLGAIYLD G  AA + ++++  ERL  AV++L RLDYKTLLQE+  R +D APVYVI + GPDHAK FFATVM+ GQ  G+G G SKK AEQ AA  ACD+L+A
Sbjct:   56 VNATALAAMAVELDIGSCLLLGKGESFAGGRAKPSILSDALEAVLGAIYLDAGSGAAYEFVERVLGERLLLAVKQLHRLDYKTLLQEIVVREFDAAPVYVIREEGPDHAKQFFATVMISGQQWGEGTGTSKKQAEQVAAMVACDSLSA 203          
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Match: A0A6L6CVM9_9ACTN (Ribonuclease III (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6L6CVM9_9ACTN)

HSP 1 Score: 162 bits (411), Expect = 1.280e-47
Identity = 87/146 (59.59%), Postives = 107/146 (73.29%), Query Frame = 1
Query:    1 VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYLDGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYVITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAAAEQACDAL 438
            VNA ALAE+AV++D+G+C++LGKGEA+AGG  K SILSDA EAV+GA+YLD G   A  V+  L   R+A AV  LDRLD KT LQE+ +RL D    Y + D GPDH K F+ATV++G + LG GEG+SKK AEQ AAE ACD L
Sbjct:   80 VNAIALAEMAVDLDIGSCIMLGKGEAAAGGNEKTSILSDAFEAVIGAVYLDAGPTVAHSVVSALMAPRIADAVGGLDRLDAKTRLQELASRLLDQHVHYRVEDEGPDHEKMFYATVIIGERELGSGEGRSKKAAEQIAAEIACDTL 225          
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Match: A0A2E8Y1G8_9ACTN (Ribonuclease 3 n=5 Tax=Actinobacteria TaxID=201174 RepID=A0A2E8Y1G8_9ACTN)

HSP 1 Score: 160 bits (406), Expect = 7.310e-47
Identity = 93/150 (62.00%), Postives = 108/150 (72.00%), Query Frame = 1
Query:    1 VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYLDGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYVITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAAAEQACDALAAAE 450
            VNASALAEVA +IDLGA LLLG GE +AGGR K SILSDALEAV GA+Y+D G Q A DV+  L   RLA A  RLDRLD K+ LQE+ A L   +P Y IT  GPDH K F ATV++ G+ LG G G+SKK AEQ AA +A DAL A++
Sbjct:   80 VNASALAEVARDIDLGAYLLLGNGEDAAGGRNKESILSDALEAVFGAVYIDAGSQQAFDVVRSLIAPRLAAAPSRLDRLDQKSTLQELLASLGRPSPSYTITSQGPDHDKEFTATVVIDGEVLGSGVGRSKKLAEQQAAGEAIDALHASD 229          
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Match: A0A6N2DJ17_9ACTN (Ribonuclease 3 n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DJ17_9ACTN)

HSP 1 Score: 160 bits (404), Expect = 3.710e-46
Identity = 90/139 (64.75%), Postives = 105/139 (75.54%), Query Frame = 1
Query:    1 VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYLDGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYVITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAAA 417
            VNA ALAEVAVE+DLG  LLLGKGE +AGGR K SILSDA EAVLGA+Y+DGG + A  V+++    RL +AV  LDRLD+K+ LQE+TARL   AP Y++T  GPDHAK F A V V    LG GEG+SKKTAEQAAA
Sbjct:   94 VNAGALAEVAVELDLGRHLLLGKGEDAAGGREKTSILSDAFEAVLGAVYVDGGTEVAYQVVERFIGPRLVEAVGTLDRLDFKSSLQELTARLGRGAPEYLLTSDGPDHAKRFRAEVWVDRGRLGIGEGRSKKTAEQAAA 232          
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Match: A0A7Y2EW04_9ACTN (Ribonuclease 3 n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y2EW04_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 9.090e-46
Identity = 84/138 (60.87%), Postives = 105/138 (76.09%), Query Frame = 1
Query:    1 VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYLDGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYVITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAA 414
            VNA  LAE+A EI LG  LLLGKGEA+A G  KPSILSDA EAVLGA+YLDGGV AA  ++D+    R+++++ R+D+LD+KT LQE+ AR+   AP YV+T TGPDHAK F A V V G+ +G+G G+SKK AEQAA
Sbjct:   86 VNAITLAEIAEEIGLGPYLLLGKGEAAADGAEKPSILSDAFEAVLGAVYLDGGVPAAHAMVDRWVAPRMSKSIDRIDQLDHKTQLQELCARVGREAPAYVVTSTGPDHAKSFVARVTVDGEPMGEGTGRSKKAAEQAA 223          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12709.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B6N5_9ACTN5.490e-6574.65Ribonuclease 3 n=1 Tax=Acidimicrobiaceae bacterium... [more]
A0A7X9KJV6_9ACTN5.430e-6373.94Ribonuclease 3 n=2 Tax=Actinobacteria TaxID=201174... [more]
A0A7K1B556_9ACTN4.910e-6272.97Ribonuclease 3 n=2 Tax=root TaxID=1 RepID=A0A7K1B5... [more]
A0A6I3EVJ5_9ACTN8.520e-6069.18Ribonuclease 3 n=2 Tax=root TaxID=1 RepID=A0A6I3EV... [more]
A0A6I3X516_9ACTN3.500e-5866.22Ribonuclease 3 n=2 Tax=root TaxID=1 RepID=A0A6I3X5... [more]
A0A6I3CAT3_9ACTN4.920e-5766.89Ribonuclease 3 n=2 Tax=root TaxID=1 RepID=A0A6I3CA... [more]
A0A6L6CVM9_9ACTN1.280e-4759.59Ribonuclease III (Fragment) n=1 Tax=Actinomycetia ... [more]
A0A2E8Y1G8_9ACTN7.310e-4762.00Ribonuclease 3 n=5 Tax=Actinobacteria TaxID=201174... [more]
A0A6N2DJ17_9ACTN3.710e-4664.75Ribonuclease 3 n=1 Tax=Ilumatobacter sp. TaxID=196... [more]
A0A7Y2EW04_9ACTN9.090e-4660.87Ribonuclease 3 n=1 Tax=Ilumatobacter sp. TaxID=196... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12709contigP-wetherbeei_contig12709:1493..1948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_18670
Preferred namernc
PFAMsRibonucleas_3_3,dsrm
Model size456
Max annot lvl84992|Acidimicrobiia
KEGG koko:K03685
KEGG Pathwayko03008,ko05205,map03008,map05205
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.74e-42
EggNOG OGsCOG0571@1|root,COG0571@2|Bacteria,2GKER@201174|Actinobacteria,4CN7Y@84992|Acidimicrobiia
EC3.1.26.3
DescriptionDigests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
Cds size456
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.0298736-CDS-P-wetherbeei_contig12709:1492..19481683185958.0298736-CDS-P-wetherbeei_contig12709:1492..1948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12709 1493..1948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12709.2.1prot_P-wetherbeei_contig12709.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12709 1493..1948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12709.2.1

>prot_P-wetherbeei_contig12709.2.1 ID=prot_P-wetherbeei_contig12709.2.1|Name=mRNA_P-wetherbeei_contig12709.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
VNASALAEVAVEIDLGACLLLGKGEASAGGRMKPSILSDALEAVLGAIYL
DGGVQAAADVIDQLFTERLAQAVQRLDRLDYKTLLQEMTARLYDTAPVYV
ITDTGPDHAKHFFATVMVGGQALGDGEGKSKKTAEQAAAEQACDALAAAE
A*
back to top

mRNA from alignment at P-wetherbeei_contig12709:1493..1948-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12709.2.1 ID=mRNA_P-wetherbeei_contig12709.2.1|Name=mRNA_P-wetherbeei_contig12709.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig12709:1493..1948- (Phaeothamnion wetherbeei SAG_119_79)
GTCAACGCGTCGGCGTTGGCCGAGGTGGCCGTTGAGATCGACCTCGGCGC CTGCCTGCTGCTCGGCAAGGGCGAGGCCTCGGCGGGCGGGCGGATGAAGC CGTCGATCCTGTCCGACGCGCTCGAGGCGGTGCTCGGGGCGATCTACCTC GACGGCGGCGTGCAGGCGGCCGCCGACGTGATCGACCAGCTGTTCACCGA GCGCCTCGCGCAGGCGGTGCAGCGCCTCGATCGGCTCGACTACAAGACGC TGCTGCAGGAGATGACGGCCCGCCTGTACGACACCGCGCCGGTGTACGTC ATCACCGACACCGGGCCCGACCACGCCAAGCACTTCTTCGCCACCGTGAT GGTCGGTGGCCAAGCATTGGGCGATGGTGAGGGCAAGTCGAAGAAGACCG CCGAGCAGGCTGCCGCCGAGCAGGCCTGCGACGCGCTCGCAGCCGCCGAG GCCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12709:1493..1948-

>mRNA_P-wetherbeei_contig12709.2.1 ID=mRNA_P-wetherbeei_contig12709.2.1|Name=mRNA_P-wetherbeei_contig12709.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig12709:1493..1948- (Phaeothamnion wetherbeei SAG_119_79)
GTCAACGCGTCGGCGTTGGCCGAGGTGGCCGTTGAGATCGACCTCGGCGC
CTGCCTGCTGCTCGGCAAGGGCGAGGCCTCGGCGGGCGGGCGGATGAAGC
CGTCGATCCTGTCCGACGCGCTCGAGGCGGTGCTCGGGGCGATCTACCTC
GACGGCGGCGTGCAGGCGGCCGCCGACGTGATCGACCAGCTGTTCACCGA
GCGCCTCGCGCAGGCGGTGCAGCGCCTCGATCGGCTCGACTACAAGACGC
TGCTGCAGGAGATGACGGCCCGCCTGTACGACACCGCGCCGGTGTACGTC
ATCACCGACACCGGGCCCGACCACGCCAAGCACTTCTTCGCCACCGTGAT
GGTCGGTGGCCAAGCATTGGGCGATGGTGAGGGCAAGTCGAAGAAGACCG
CCGAGCAGGCTGCCGCCGAGCAGGCCTGCGACGCGCTCGCAGCCGCCGAG
GCCTGA
back to top