mRNA_P-wetherbeei_contig1269.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1269.3.1
Unique NamemRNA_P-wetherbeei_contig1269.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Match: A0A836C8Y8_9STRA (Putative GTPase activating protein for Arf-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Y8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.340e-39
Identity = 68/111 (61.26%), Postives = 85/111 (76.58%), Query Frame = 3
Query:    3 LPQSIIMNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEVTVVVNGGNDKVNALYMARHDPRHDLAEPDGNSVEKRREFIRTKYVDRRWYATPEDMARQREREQRTKEAR 335
            LP  I+++F TFVCT CSGIHREFSHR KS+ L+NFT+DEV  +  GGN   N L++A++DP  DL EPDG+SVEKRREFIR KY ++RWYAT ED+AR+ E + R   AR
Sbjct:   30 LPNYIVLDFKTFVCTACSGIHREFSHRIKSVSLANFTDDEVRAIRKGGNRASNDLWLAKYDPDRDLPEPDGSSVEKRREFIRMKYQEKRWYATTEDLAREAEEQARRASAR 140          
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Match: D8LD15_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD15_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.760e-38
Identity = 69/104 (66.35%), Postives = 79/104 (75.96%), Query Frame = 3
Query:    3 LPQSIIMNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEVTVVVNGGNDKVNALYMARHDPRHDLAEPDGNSVEKRREFIRTKYVDRRWYATPEDMARQRERE 314
            LPQ II +F TFVCT CSGIHREFSHR KSI L+ F+E+EV  V  GGN+  N LYMAR+ P HDL EP+G    K REFIRTKYVD+RWY TPED+A  R+RE
Sbjct:   39 LPQWIISDFNTFVCTACSGIHREFSHRVKSISLATFSEEEVAAVKAGGNETSNKLYMARYRPGHDLPEPEGGRAAKHREFIRTKYVDKRWYGTPEDLANDRQRE 142          
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Match: A0A6H5KW83_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW83_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.230e-36
Identity = 71/111 (63.96%), Postives = 84/111 (75.68%), Query Frame = 3
Query:    3 LPQSIIMNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEVTVVVNGGNDKVNALYMARHDPRHDLAEPDGNSVEKRREFIRTKYVDRRWYATPEDMARQREREQRTKEAR 335
            LPQ II +F TFVCT CSGIHREFSHR KSI L+ F+E+EV  V  GGN+  N LYMAR+ P HDL EP+G    K REFIRTKYVD+RWY TPED+A+ R+RE   +E+R
Sbjct:   39 LPQYIISDFNTFVCTACSGIHREFSHRVKSISLATFSEEEVAAVKAGGNEASNKLYMARYRPGHDLPEPEGGRAAKHREFIRTKYVDKRWYGTPEDLAQDRQREAEREESR 149          
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Match: A0A0M0K2F0_9EUKA (Arf gtpase activating protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K2F0_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 7.800e-23
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 3
Query:    9 QSIIMNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEVTVVVNGGNDKVNALYMARHDPRHDLAEPDGNSVEKRREFIRTKYVDRRWYA 278
            Q +++NF TFVCT CSGIHRE  H+ KS+G+S FT DE+  V  GGNDK   ++MA++D R D A P     EK R F++ KY ++RWY+
Sbjct:   36 QYVVLNFNTFVCTACSGIHREMQHKIKSVGMSTFTTDEIKAVDAGGNDKAQKMWMAKYDAR-DGAVPAEGETEKLRAFLKRKYQEKRWYS 124          
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Match: A0A7S2KRS9_9DINO (Hypothetical protein (Fragment) n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2KRS9_9DINO)

HSP 1 Score: 102 bits (253), Expect = 1.660e-22
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 3
Query:    6 PQSIIMNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEVTVVVNGGNDKVNALYMARHDPRHDLAEPDGNSVEKRREFIRTKYVDRRWYATPEDMARQRE 308
            P  + +++ TFVCT CSG+HREFSH+ K I +S +T +EV  +  GGN K    ++AR DPR D AEPD +   + REFIR KY+DRRW    +D  R R+
Sbjct:   34 PTYVCLSYYTFVCTTCSGLHREFSHKIKGISISKWTPEEVDEIEQGGNAKAAEKFLARWDPR-DFAEPDSSDPNRCREFIRMKYIDRRWTNRGDDSGRDRD 133          
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Match: A0A7S1APG6_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1APG6_NOCSC)

HSP 1 Score: 99.4 bits (246), Expect = 7.220e-22
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 3
Query:    6 PQSIIMNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEVTVVVNGGNDKVNALYMARHDPRHDLAEPDGNSVEKRREFIRTKYVDRRW 272
            P  + M FGTFVCT CSG+HREFSH+ K I +S F+ +EV  +  GGN K   ++MAR +PR D  EPD +   K REF+R KYVD++W
Sbjct:   34 PTYVCMTFGTFVCTTCSGLHREFSHKVKGISVSKFSVEEVEELERGGNAKAFDIWMARWEPR-DCPEPDNSEQGKVREFLRQKYVDKKW 121          
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Match: A0A4D9DD40_9STRA (Arf-GAP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD40_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.560e-21
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 3
Query:    3 LPQSIIMNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEVTVVVNGGNDKVNALYMARHDPRHDLAEPDGNSVEKRREFIRTKYVDRRWY 275
            LPQ + + F TF+CT CSGIHREFSHR KSI LS F+ +EV  + +GGN+   A+Y+AR +PR D AEP      + R++IR KYV+RRW+
Sbjct:   35 LPQYVNLTFNTFICTACSGIHREFSHRVKSISLSTFSLEEVKALKDGGNEACAAMYLARWEPR-DYAEPQAGDEHRIRDWIRHKYVERRWH 124          
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Match: A0A7S1LNS8_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LNS8_ALECA)

HSP 1 Score: 97.4 bits (241), Expect = 2.800e-21
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = 3
Query:    6 PQSIIMNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEVTVVVNGGNDKVNALYMARHDPRHDLAEPDGNSVEKRREFIRTKYVDRRW 272
            P  I ++F TFVCT CSG+HREFSH+ K I +S +T +EV  +  GGN +    ++AR DPR D  EPD +   K R+FIR KYVDRRW
Sbjct:   34 PTYICLSFTTFVCTTCSGLHREFSHKVKGISVSKWTPEEVEEIERGGNARAADKWLARWDPR-DYPEPDSSDQSKCRDFIRMKYVDRRW 121          
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Match: K3W7J5_GLOUD (Arf-GAP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7J5_GLOUD)

HSP 1 Score: 96.7 bits (239), Expect = 2.860e-21
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 3
Query:    3 LPQSIIMNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEV-TVVVNGGNDKVNALYMARHDPRHDLAEPDGNSVEKRREFIRTKYVDRRW-YATP 284
            +PQ I ++F TFVCT CSGIHREF+HR KSI +S FTE EV T++  GGND     + A+HDP        G   E+ R FIR  Y+DR+W Y +P
Sbjct:   38 MPQYICLDFNTFVCTSCSGIHREFAHRVKSISMSKFTESEVKTMIKLGGNDAAQKYWRAKHDPN--FRPQGGTDGERTRNFIRLTYIDRKWVYESP 131          
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Match: A0A0M0K1I0_9EUKA (Putative ADP-ribosylation factor gtpase-activating protein agd14-like protein n=2 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1I0_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 7.460e-21
Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 3
Query:    9 QSIIMNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEVTVVVNGGNDKVNALYMARHDPRHDLAEPDGNSVEKRREFIRTKYVDRR 269
            Q +++NF TFVCT CSGIHRE  H+ KS+G+S FT DE+  V  GGNDK   ++MA++D R D A P    VEK R F++ KY ++R
Sbjct:   36 QYVVLNFNTFVCTACSGIHREMQHKIKSVGMSTFTTDEIKAVDAGGNDKAQKMWMAKYDAR-DGAVPAEGEVEKLRAFLKRKYQEKR 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1269.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8Y8_9STRA4.340e-3961.26Putative GTPase activating protein for Arf-domain-... [more]
D8LD15_ECTSI1.760e-3866.35Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KW83_9PHAE2.230e-3663.96Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A0M0K2F0_9EUKA7.800e-2351.11Arf gtpase activating protein n=1 Tax=Chrysochromu... [more]
A0A7S2KRS9_9DINO1.660e-2248.51Hypothetical protein (Fragment) n=2 Tax=Brandtodin... [more]
A0A7S1APG6_NOCSC7.220e-2252.81Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A4D9DD40_9STRA1.560e-2153.85Arf-GAP domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S1LNS8_ALECA2.800e-2152.81Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
K3W7J5_GLOUD2.860e-2151.04Arf-GAP domain-containing protein n=1 Tax=Globispo... [more]
A0A0M0K1I0_9EUKA7.460e-2151.72Putative ADP-ribosylation factor gtpase-activating... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1269contigP-wetherbeei_contig1269:4115..5087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LD15
PFAMsArfGap
Model size824
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.47e-36
EggNOG OGsCOG5347@1|root,KOG0702@2759|Eukaryota
DescriptionGTPase activator activity
Cds size804
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.9589667-UTR-P-wetherbeei_contig1269:4114..41341683185956.9589667-UTR-P-wetherbeei_contig1269:4114..4134Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1269 4115..4134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.968549-CDS-P-wetherbeei_contig1269:4134..42361683185956.968549-CDS-P-wetherbeei_contig1269:4134..4236Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1269 4135..4236 +
1683185956.9771366-CDS-P-wetherbeei_contig1269:4385..50871683185956.9771366-CDS-P-wetherbeei_contig1269:4385..5087Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1269 4386..5087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1269.3.1prot_P-wetherbeei_contig1269.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1269 4135..5087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1269.3.1

>prot_P-wetherbeei_contig1269.3.1 ID=prot_P-wetherbeei_contig1269.3.1|Name=mRNA_P-wetherbeei_contig1269.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
MNFGTFVCTVCSGIHREFSHRQKSIGLSNFTEDEVTVVVNGGNDKVNALY
MARHDPRHDLAEPDGNSVEKRREFIRTKYVDRRWYATPEDMARQREREQR
TKEARPTGVVPVEPLRRRKSAARVVTGIDQPGGLAHKALPMPRGTSAAAA
AAGGDGAANGGGGGGDLLDLLSSPAPEPTPAVQAGPPPPLATGGGAQQGY
SVSQQPPVSPWNAFGGPAAPVSPWDAFGGSAGAPTPPAVTQHQPPQQQHQ
QQPPPQQYSAMGGGFGLV
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mRNA from alignment at P-wetherbeei_contig1269:4115..5087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1269.3.1 ID=mRNA_P-wetherbeei_contig1269.3.1|Name=mRNA_P-wetherbeei_contig1269.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=973bp|location=Sequence derived from alignment at P-wetherbeei_contig1269:4115..5087+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTGCCTCAAAGCATCATCATGAATTTTGGAACGTTCGTGTGCACGGTG TGCTCTGGCATTCATCGCGAGTTTTCTCACCGGCAAAAGTCCATCGGCCT CAGCAACTTCACCGAGGACGAGGTAAGCAGTTTGCACAGCCGGCCATTAA TAACAACCGCTTTCTAACCGCTGCTATTATCGGCGATTCGGGTTCCATCT CCGTTATCAATGTTGTCAATATCTGGATGTAATGGAACCGTGTCTTCCTC TCTCTCACATCCGTCCGCCAGGTGACAGTGGTCGTCAACGGCGGGAACGA CAAGGTGAACGCGCTCTACATGGCGCGGCACGACCCGCGGCACGATCTCG CGGAGCCGGACGGCAACAGCGTCGAAAAGCGCCGCGAGTTCATCCGCACA AAATACGTCGACCGCCGGTGGTACGCCACGCCTGAAGACATGGCGCGGCA ACGGGAGCGGGAGCAGCGCACGAAAGAGGCGCGGCCGACGGGCGTCGTGC CGGTGGAGCCGCTGCGGCGCCGGAAGAGCGCGGCGCGAGTGGTCACGGGG ATCGACCAGCCGGGGGGGCTGGCCCACAAGGCGCTGCCGATGCCGCGCGG CACCAGCGCGGCGGCTGCGGCGGCTGGCGGCGACGGTGCAGCCAACGGTG GCGGTGGTGGGGGTGATTTGCTGGACCTGCTTTCTTCTCCAGCACCTGAG CCAACGCCAGCGGTCCAGGCCGGGCCCCCGCCGCCGCTGGCAACCGGCGG CGGGGCTCAACAGGGCTATTCGGTCTCGCAACAGCCACCCGTCTCTCCAT GGAACGCGTTTGGCGGGCCGGCAGCGCCGGTTTCGCCGTGGGACGCGTTT GGTGGGAGCGCTGGGGCGCCGACACCGCCGGCAGTGACCCAGCACCAGCC GCCGCAGCAGCAGCACCAACAGCAGCCACCGCCGCAACAGTACAGTGCCA TGGGTGGCGGCTTCGGCCTTGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1269:4115..5087+

>mRNA_P-wetherbeei_contig1269.3.1 ID=mRNA_P-wetherbeei_contig1269.3.1|Name=mRNA_P-wetherbeei_contig1269.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig1269:4115..5087+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATTTTGGAACGTTCGTGTGCACGGTGTGCTCTGGCATTCATCGCGA
GTTTTCTCACCGGCAAAAGTCCATCGGCCTCAGCAACTTCACCGAGGACG
AGGTGACAGTGGTCGTCAACGGCGGGAACGACAAGGTGAACGCGCTCTAC
ATGGCGCGGCACGACCCGCGGCACGATCTCGCGGAGCCGGACGGCAACAG
CGTCGAAAAGCGCCGCGAGTTCATCCGCACAAAATACGTCGACCGCCGGT
GGTACGCCACGCCTGAAGACATGGCGCGGCAACGGGAGCGGGAGCAGCGC
ACGAAAGAGGCGCGGCCGACGGGCGTCGTGCCGGTGGAGCCGCTGCGGCG
CCGGAAGAGCGCGGCGCGAGTGGTCACGGGGATCGACCAGCCGGGGGGGC
TGGCCCACAAGGCGCTGCCGATGCCGCGCGGCACCAGCGCGGCGGCTGCG
GCGGCTGGCGGCGACGGTGCAGCCAACGGTGGCGGTGGTGGGGGTGATTT
GCTGGACCTGCTTTCTTCTCCAGCACCTGAGCCAACGCCAGCGGTCCAGG
CCGGGCCCCCGCCGCCGCTGGCAACCGGCGGCGGGGCTCAACAGGGCTAT
TCGGTCTCGCAACAGCCACCCGTCTCTCCATGGAACGCGTTTGGCGGGCC
GGCAGCGCCGGTTTCGCCGTGGGACGCGTTTGGTGGGAGCGCTGGGGCGC
CGACACCGCCGGCAGTGACCCAGCACCAGCCGCCGCAGCAGCAGCACCAA
CAGCAGCCACCGCCGCAACAGTACAGTGCCATGGGTGGCGGCTTCGGCCT
TGTT
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