mRNA_P-wetherbeei_contig1262.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1262.1.2
Unique NamemRNA_P-wetherbeei_contig1262.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1262.1.2 vs. uniprot
Match: D8LJJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ7_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.250e-21
Identity = 74/191 (38.74%), Postives = 97/191 (50.79%), Query Frame = 3 
Query:    3 YFLRLKDMDLRMMGLTKAEIAKAKDAIADLKREKEVTVTRPHPLLEQRNAATYGRLYLPGALSSYEYYLAVFGAPAPVAEGRLVFAEPLDGCSDYVTYFGGSRQPKVSWWRRLWRRWRWGDAGXXXXXXXXXXGALEDGRPTFVVVYRGKCSFADKARNVGAAETSTGAAAMVIVN---ADEELFRVAAVI 566
            Y   L DMDLR+MGL+ A+IA  K    +L+ E++VT  R HPLL++RN  TYGRL+L  + SS+E+YLA FG P PV E  L++AEP D C                                           L  G  T V+  RG+CSF DKA  V     S+ A A+V++N     E+LFRVAA +
Sbjct:  124 YIFTLNDMDLRLMGLSPADIATVKQHAEELRVERDVTEERLHPLLQRRNELTYGRLFLDRSASSFEFYLAGFGPPVPVDEASLIWAEPRDACGTLTN------------------------------------SELLPG--TIVLAERGRCSFVDKANTVA----SSNALALVVINNGPEGEDLFRVAATL 272
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1262.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJJ7_ECTSI1.250e-2138.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1262contigP-wetherbeei_contig1262:256..3748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1919
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionProtease-associated domain, PA
Ec32 orthologEc-17_002250.1
Cds size1710
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1262.1.2prot_P-wetherbeei_contig1262.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1262 279..3562 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.8822572-UTR-P-wetherbeei_contig1262:255..2781683185954.8822572-UTR-P-wetherbeei_contig1262:255..278Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1262 256..278 +
1683185954.9353166-UTR-P-wetherbeei_contig1262:3562..37481683185954.9353166-UTR-P-wetherbeei_contig1262:3562..3748Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1262 3563..3748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.8903518-CDS-P-wetherbeei_contig1262:278..3621683185954.8903518-CDS-P-wetherbeei_contig1262:278..362Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1262 279..362 +
1683185954.8978832-CDS-P-wetherbeei_contig1262:643..7361683185954.8978832-CDS-P-wetherbeei_contig1262:643..736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1262 644..736 +
1683185954.9053404-CDS-P-wetherbeei_contig1262:1360..16521683185954.9053404-CDS-P-wetherbeei_contig1262:1360..1652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1262 1361..1652 +
1683185954.9129596-CDS-P-wetherbeei_contig1262:1867..21781683185954.9129596-CDS-P-wetherbeei_contig1262:1867..2178Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1262 1868..2178 +
1683185954.9204035-CDS-P-wetherbeei_contig1262:2406..32881683185954.9204035-CDS-P-wetherbeei_contig1262:2406..3288Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1262 2407..3288 +
1683185954.927899-CDS-P-wetherbeei_contig1262:3514..35621683185954.927899-CDS-P-wetherbeei_contig1262:3514..3562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1262 3515..3562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1262.1.2

>prot_P-wetherbeei_contig1262.1.2 ID=prot_P-wetherbeei_contig1262.1.2|Name=mRNA_P-wetherbeei_contig1262.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=570bp
MDLRMMGLTKAEIAKAKDAIADLKREKEVTVTRPHPLLEQRNAATYGRLY
LPGALSSYEYYLAVFGAPAPVAEGRLVFAEPLDGCSDYVTYFGGSRQPKV
SWWRRLWRRWRWGDAGGGGGGGGDGGGALEDGRPTFVVVYRGKCSFADKA
RNVGAAETSTGAAAMVIVNADEELFRVAAVIAKSRAPAPAAAQDAAGALK
PATTEAVGAAAADAAAAAAAASAAGGVEAEAGVPEGLAVAMVRASAGPQL
AAAVAWGGGQVQARLVPLECESKIAECNPILPEESLMTLQVRGGNMAAAL
TADALAGRGADAADAAAAAAVIVEVDFVSARFGTTLPPQPVRLVWPERAD
GCPPMAAPVSEEGGGGGVGRAAERDLAAAEAVVVAALAAGEVAGVAGAAV
VVRRGGCSFGNKAAAAQASGARAVVIVDDGGEPLQPIGASDAQAKSLYIP
AVFVTREAGERLQAVAAAAAAAVADAAGGGGAGGGGERSSGGGGTVWVAF
QPDDAVAVAWEALTAAHVEGEAARQAAVEAALGSVGKSECQAAWARREAA
TLLQGAGSAGGVVDAKDEL*
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mRNA from alignment at P-wetherbeei_contig1262:256..3748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1262.1.2 ID=mRNA_P-wetherbeei_contig1262.1.2|Name=mRNA_P-wetherbeei_contig1262.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3493bp|location=Sequence derived from alignment at P-wetherbeei_contig1262:256..3748+ (Phaeothamnion wetherbeei SAG_119_79)
GTTACTTTCTTCGACTGAAGGATATGGATCTGCGAATGATGGGGCTCACC
AAGGCGGAGATTGCCAAGGCGAAGGATGCCATCGCCGACCTCAAGCGAGA
AAAGGAGGTGCGGACTCGGCGGGGCGGAAGACTCTCTGCCGCTGCCTGAA
ACTTTTTGATTGGCGTTACAAACCGCATTCGGCGTTTTTCTTGTTCAGTA
GCGCGGGCTTGTGTGTAACTTTGAATCTCCGACTGAAAGGAGCTACTTAC
TTCTATGCAGCAGCCGGGTGTCGGGCTTTCAATTCCCTGTCCTTTCTTCT
CACCGTTCTCTTACAAACTGACTGTTCATAAGAAATTGATGCCTGGCTTC
ATACCGTATCACTGTGCTTGACCGCGCGACCCGCGCAGGTGACGGTGACA
CGGCCGCACCCGCTTTTGGAGCAGCGCAACGCCGCGACATACGGCCGCCT
CTACCTCCCCGGGGCGCTCTCCAGCTACGAGGTGAGCTATTTTGTTTGTA
CCTCGCTTTCTCTTTCAACTATCCCCGTTTTTATTTCAAACTGGTCCCAA
CTTCTTGGGGGGCAAAGAAACAAATTTCCAGTCAGCGTCAAGACGGCTTA
CGATGGCACCGCGAGGATCCGGATAGTCCAGCTAGGCCGAAGCCGCCGCC
ACATCCGCAACAAAGGCTCGACTTCTGCTGTTAATAAGGGAAAATGGCTT
AGGGATAGGGTTTCTGTTCCGTTGGCGCGGTCCACGCCGTAGATTGGGCC
TTTCTTGCGGATTTGGCGGCGGCTTCGTCCGAGTTGGACTATCCGGATCC
TCGCGGTGCCATCGCAAGCCGTCTTGACGCCGACTGGAAATTTGTTTCTT
TGCCCCCCAAAAAGGTTGGGACAAGTTTGGAATGAAAACGGGGATATTTG
ACACATTTGCGTGCAGCCAGGCGCCATGCACGGCGTTCATTGCTCTCCCT
GCCTCTGTCAGCGAAGTATCAGCGTGGTATGCGTCCGTCTCCTTTCCTCT
TCTGCAATAGGTCACGCTTTTCCTCTCCCTCGGAATTTTCTCTGCCTTAG
GCAACTTTCTTGCTCTTTGCTACACTCCATCCACGCACTTATTTCTCGCT
TTTAGTACTACCTGGCCGTCTTCGGCGCCCCCGCCCCCGTTGCGGAGGGC
CGCCTCGTCTTCGCCGAGCCGCTCGACGGCTGTTCCGACTACGTCACCTA
CTTCGGCGGCAGCCGCCAGCCCAAAGTCAGCTGGTGGCGGCGGCTCTGGC
GGCGGTGGCGCTGGGGCGACGCCGGCGGCGGCGGCGGCGGCGGTGGCGAC
GGCGGCGGTGCTTTGGAGGATGGAAGGCCGACGTTCGTGGTGGTGTACCG
AGGGAAGTGCTCGTTCGCAGACAAGGCTCGGAACGTCGGCGCGGCAGGTG
AGGAATGCTTTTCGCATCTGCGTTTATTTGATGGTTCCAGCCCGCCATTC
TTTCCTTTACTCGGTGGAATTCTTGGAATGTCTATTTGAAACTTCCGTCT
TATCGGCCATTTTGTCGGCCATTTTTCGGTTCAACTTCACCCCACCTTCT
CGACCATTTACGAACGAAACTGCAAGTTCTAACTCACATATCTTTGTTCG
TCCTTTTAAAAGAAACGTCGACAGGCGCCGCGGCGATGGTAATCGTCAAC
GCCGATGAGGAGCTCTTCCGCGTCGCCGCGGTCATCGCCAAGTCGCGTGC
CCCGGCGCCAGCGGCGGCGCAGGACGCGGCGGGGGCGCTCAAGCCGGCCA
CCACCGAAGCCGTGGGGGCGGCAGCCGCCGACGCCGCGGCGGCGGCGGCG
GCGGCGTCCGCTGCGGGCGGCGTTGAGGCGGAGGCTGGTGTGCCGGAAGG
GCTGGCGGTGGCCATGGTTCGTGCGTCGGCGGGACCGCAATTGGCGGCGG
CGGTGGCGTGGGGCGGCGGGCAGGTGCATATGCTCCTTTGGAAAGGGAAT
GGTATCGCCCGCCATTCCGGGCTTTATGACGAGAGAAGTGGAGAGTTTCG
TCCCTTTGGTCTTGGTGTTGCCACTGTGCAGAGCGCCATTCTTCCTCCCG
TTGAAACACGCAGCAGCGAGCCATAAGTTCGACCAAAGCAAGACTGGCGA
TCTTTCTCTCCCCGCTTATTCCTCCTTCTTGTCCTCGCGTCATGGTCTCA
GGTGCAGGCCCGCCTCGTGCCCCTCGAGTGTGAATCCAAAATTGCTGAAT
GCAACCCCATCCTGCCGGAAGAGAGCCTCATGACCCTCCAGGTCCGGGGC
GGAAACATGGCGGCCGCGCTCACTGCCGACGCCTTGGCTGGTCGCGGTGC
CGACGCCGCCGACGCCGCCGCCGCCGCTGCCGTCATCGTCGAGGTAGATT
TTGTGTCGGCGCGCTTTGGGACCACACTCCCGCCGCAACCAGTCCGCCTC
GTGTGGCCGGAACGGGCCGACGGCTGCCCGCCGATGGCGGCGCCGGTATC
CGAAGAGGGCGGCGGTGGCGGTGTCGGCAGAGCGGCGGAGAGAGATCTGG
CGGCCGCGGAGGCGGTGGTGGTGGCGGCGCTGGCGGCGGGCGAAGTGGCG
GGGGTAGCCGGCGCGGCCGTGGTGGTGCGGCGGGGCGGGTGCTCCTTCGG
GAACAAGGCCGCCGCGGCGCAGGCGAGCGGCGCCCGCGCCGTCGTGATCG
TCGACGACGGTGGCGAGCCGCTGCAGCCGATCGGCGCCTCGGATGCGCAG
GCCAAGTCGCTCTACATTCCCGCGGTATTCGTGACGAGGGAAGCGGGAGA
ACGGCTGCAAGCCGTCGCTGCCGCCGCGGCGGCGGCAGTAGCTGATGCGG
CCGGCGGCGGCGGCGCTGGTGGTGGCGGAGAGAGGTCCAGCGGCGGCGGC
GGCACGGTCTGGGTTGCGTTTCAGCCCGACGACGCAGTGGCGGTGGCGTG
GGAGGCGCTGACGGCGGCGCACGTCGAGGGGGAGGCCGCTCGGCAGGCGG
CGGTCGAGGCGGCGCTGGGGTCGGTGGGGAAGAGCGAGTGCCAGGCCGCA
TGGGCAAGAAGGGAGGCGGCGACGCTGCTGCAGGTAAGAGATAGCCGATG
CTGCGACCAGCTGGGCTTCATTGGAAAAGGGCTGGATCGGCCACTTTCAC
TGCCGAGGCTGCCAGTCTGTTGCTGCCGCAGTGCGAGGTCAATCTTTGAG
TTCCTGCTGGGCAGCTATCGGAGAGGAGTTCTGCCTTCTTTCCAAGACTC
AAATACCCTTTCAACGTCTCATGCTGTCCTCTTCTCTATAAATTCCTTCT
TCCTCGCAGGGCGCCGGTTCAGCAGGAGGTGTGGTGGATGCCAAGGATGA
GTTGTGAAGCGGAGTCATGGCTACCACCAACTGTCTAGCTGCTCTAAAGG
CCACACGGGGGCAACTGCTCCAGGAACCGATCAAATCCCGGCCCAACTGC
ATGGTAGAGAGGAAACAGGCGGGAAACACAGATACCGTAGGAACAGCCCC
GGAAAGGACGAATGGGGTATGTATAAATTTATGAAACGTCTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1262:256..3748+

>mRNA_P-wetherbeei_contig1262.1.2 ID=mRNA_P-wetherbeei_contig1262.1.2|Name=mRNA_P-wetherbeei_contig1262.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1710bp|location=Sequence derived from alignment at P-wetherbeei_contig1262:256..3748+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCTGCGAATGATGGGGCTCACCAAGGCGGAGATTGCCAAGGCGAA
GGATGCCATCGCCGACCTCAAGCGAGAAAAGGAGGTGACGGTGACACGGC
CGCACCCGCTTTTGGAGCAGCGCAACGCCGCGACATACGGCCGCCTCTAC
CTCCCCGGGGCGCTCTCCAGCTACGAGTACTACCTGGCCGTCTTCGGCGC
CCCCGCCCCCGTTGCGGAGGGCCGCCTCGTCTTCGCCGAGCCGCTCGACG
GCTGTTCCGACTACGTCACCTACTTCGGCGGCAGCCGCCAGCCCAAAGTC
AGCTGGTGGCGGCGGCTCTGGCGGCGGTGGCGCTGGGGCGACGCCGGCGG
CGGCGGCGGCGGCGGTGGCGACGGCGGCGGTGCTTTGGAGGATGGAAGGC
CGACGTTCGTGGTGGTGTACCGAGGGAAGTGCTCGTTCGCAGACAAGGCT
CGGAACGTCGGCGCGGCAGAAACGTCGACAGGCGCCGCGGCGATGGTAAT
CGTCAACGCCGATGAGGAGCTCTTCCGCGTCGCCGCGGTCATCGCCAAGT
CGCGTGCCCCGGCGCCAGCGGCGGCGCAGGACGCGGCGGGGGCGCTCAAG
CCGGCCACCACCGAAGCCGTGGGGGCGGCAGCCGCCGACGCCGCGGCGGC
GGCGGCGGCGGCGTCCGCTGCGGGCGGCGTTGAGGCGGAGGCTGGTGTGC
CGGAAGGGCTGGCGGTGGCCATGGTTCGTGCGTCGGCGGGACCGCAATTG
GCGGCGGCGGTGGCGTGGGGCGGCGGGCAGGTGCAGGCCCGCCTCGTGCC
CCTCGAGTGTGAATCCAAAATTGCTGAATGCAACCCCATCCTGCCGGAAG
AGAGCCTCATGACCCTCCAGGTCCGGGGCGGAAACATGGCGGCCGCGCTC
ACTGCCGACGCCTTGGCTGGTCGCGGTGCCGACGCCGCCGACGCCGCCGC
CGCCGCTGCCGTCATCGTCGAGGTAGATTTTGTGTCGGCGCGCTTTGGGA
CCACACTCCCGCCGCAACCAGTCCGCCTCGTGTGGCCGGAACGGGCCGAC
GGCTGCCCGCCGATGGCGGCGCCGGTATCCGAAGAGGGCGGCGGTGGCGG
TGTCGGCAGAGCGGCGGAGAGAGATCTGGCGGCCGCGGAGGCGGTGGTGG
TGGCGGCGCTGGCGGCGGGCGAAGTGGCGGGGGTAGCCGGCGCGGCCGTG
GTGGTGCGGCGGGGCGGGTGCTCCTTCGGGAACAAGGCCGCCGCGGCGCA
GGCGAGCGGCGCCCGCGCCGTCGTGATCGTCGACGACGGTGGCGAGCCGC
TGCAGCCGATCGGCGCCTCGGATGCGCAGGCCAAGTCGCTCTACATTCCC
GCGGTATTCGTGACGAGGGAAGCGGGAGAACGGCTGCAAGCCGTCGCTGC
CGCCGCGGCGGCGGCAGTAGCTGATGCGGCCGGCGGCGGCGGCGCTGGTG
GTGGCGGAGAGAGGTCCAGCGGCGGCGGCGGCACGGTCTGGGTTGCGTTT
CAGCCCGACGACGCAGTGGCGGTGGCGTGGGAGGCGCTGACGGCGGCGCA
CGTCGAGGGGGAGGCCGCTCGGCAGGCGGCGGTCGAGGCGGCGCTGGGGT
CGGTGGGGAAGAGCGAGTGCCAGGCCGCATGGGCAAGAAGGGAGGCGGCG
ACGCTGCTGCAGGGCGCCGGTTCAGCAGGAGGTGTGGTGGATGCCAAGGA
TGAGTTGTGA
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