mRNA_P-wetherbeei_contig12595.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12595.1.1
Unique NamemRNA_P-wetherbeei_contig12595.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Match: A0A127EYY1_9HYPH (Propionyl-CoA carboxylase n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EYY1_9HYPH)

HSP 1 Score: 378 bits (971), Expect = 1.010e-124
Identity = 195/261 (74.71%), Postives = 212/261 (81.23%), Query Frame = 1
Query:    1 ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPTGIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELLLDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQVRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMPGLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDSLAVDAVIMEFA 783
            ALDAFV+DGIRHNIPF+SALM H RWQ G+LSTGFIAEEYP+GFH   P G     I AVAAAIDHVLGERKR+ISGQM GR VTR+RRR V+ G   L LDVAREA GIAV  +D  G  G  RVLVS W PGD VW G V G+ VAVQVRP+ NGFAL+HRGVE KAYVYT  EA +A+LMP+K PPDTGK LLCPMPGLV SIAVA+GQE+KAGE LAVVEAMKM+NVLRAERD TVKTIK  PGDSLAVDAVIMEFA
Sbjct:  411 ALDAFVIDGIRHNIPFLSALMQHKRWQEGRLSTGFIAEEYPEGFHAVKPAGETVEVIGAVAAAIDHVLGERKRQISGQMNGRTVTRERRRAVQLGELWLTLDVAREAQGIAVQFVDAKGAAGLARVLVSDWMPGDAVWSGTVHGQPVAVQVRPILNGFALSHRGVETKAYVYTEREAASAKLMPIKLPPDTGKMLLCPMPGLVRSIAVAEGQEVKAGEALAVVEAMKMENVLRAERDATVKTIKVKPGDSLAVDAVIMEFA 671          
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Match: UPI000A4DAAA7 (biotin/lipoyl-binding protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=UPI000A4DAAA7)

HSP 1 Score: 341 bits (874), Expect = 2.300e-115
Identity = 176/261 (67.43%), Postives = 203/261 (77.78%), Query Frame = 1
Query:    1 ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPTGIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELLLDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQVRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMPGLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDSLAVDAVIMEFA 783
            ALDAF VDGIRHNIPF+SALM H RW+ G+LSTGFIAEE+P GF  + P G V   IAAV AAIDHVLGERKR+ISGQ+ GR V R+RRR V     E+LL+V RE   IAV  +DT+GK G   +L S WKPGDPVW+G +DG  +AVQ RP+ANG  LAH GVE   YV+T  EA +ARLMPV    DTGK LLCPMPGLV+SIAV +GQE+KAGETLAVVEAMKMQNVLRAERDGTVK + A+ G +LAVDA+I+EFA
Sbjct:   19 ALDAFYVDGIRHNIPFLSALMHHPRWREGRLSTGFIAEEFPKGFAVRVPEGEVARRIAAVGAAIDHVLGERKRQISGQLGGRVVQRERRRAVWLDRDEILLEVGREGDAIAVRFVDTEGKAGNAHLLQSPWKPGDPVWQGTIDGHFIAVQTRPIANGIRLAHHGVEVPVYVWTEAEATSARLMPVVSASDTGKKLLCPMPGLVVSIAVTEGQEVKAGETLAVVEAMKMQNVLRAERDGTVKKVHASAGATLAVDALILEFA 279          
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Match: A0A3A0F8H8_9PROT (Propionyl-CoA carboxylase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0F8H8_9PROT)

HSP 1 Score: 353 bits (907), Expect = 4.090e-115
Identity = 181/261 (69.35%), Postives = 210/261 (80.46%), Query Frame = 1
Query:    1 ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPTGIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELLLDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQVRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMPGLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDSLAVDAVIMEFA 783
            ALD F VDGIRHNIPF+SALM H RW+ G+LSTGFIAEE+P GF  +AP G +   IAAV AAIDHVLGERKR ISGQM GR+V R+RRR V  G +E+ L++AR+A GIAV  +  DG +G  R LVS+WKPG+PVW G VDG A+AVQVRP+ANGF L+HRG+E   YVYT  EA AARLMP +   DTGK LLCPMPGLVIS+ VA+GQE+KAGETLAV+EAMKMQNVLRAERDGTVK I A PG +LAVDA+I+EFA
Sbjct:  411 ALDDFYVDGIRHNIPFLSALMDHPRWREGRLSTGFIAEEFPKGFAVRAPEGDIARRIAAVGAAIDHVLGERKRLISGQMDGRQVARERRRAVWLGRSEIALEIARDAEGIAVRFVMPDGTLGPERHLVSAWKPGEPVWHGTVDGTAIAVQVRPIANGFRLSHRGIEVPVYVYTETEAAAARLMPEEAVSDTGKKLLCPMPGLVISVDVAEGQEVKAGETLAVIEAMKMQNVLRAERDGTVKAIHAKPGATLAVDALILEFA 671          
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Match: A0A4Q7G2G8_9BRAD (Propionyl-CoA carboxylase (Fragment) n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Q7G2G8_9BRAD)

HSP 1 Score: 344 bits (882), Expect = 6.410e-115
Identity = 180/261 (68.97%), Postives = 207/261 (79.31%), Query Frame = 1
Query:    1 ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPTGIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELLLDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQVRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMPGLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDSLAVDAVIMEFA 783
            ALDAF VDGIRHNIPF+SALM H RW+ G+LSTGFIAEEYP GF  + P G +   +AAVAAAIDHVLGERKR+ISGQM GR V R+RRR V     E+ LDVAREA GIAV  I +DG  G    LVSSW PG+PVW+G +DG+ VA+QVRP+ NGF LAH+G E   YV+T  EA +ARLMPV    DTGK LLCPMPGLV+SIAV++GQE+KAGETLAVVEAMKMQNVLRAERDGTVK + A PG +LAVDA+I+EFA
Sbjct:  133 ALDAFYVDGIRHNIPFLSALMNHPRWREGKLSTGFIAEEYPKGFAARPPEGEIARRLAAVAAAIDHVLGERKRQISGQMNGRLVQRERRRAVWLERDEIALDVAREADGIAVRFIGSDGLPGNPHNLVSSWVPGEPVWQGTIDGQFVAMQVRPINNGFRLAHQGFEVPIYVFTEAEATSARLMPVVSAADTGKKLLCPMPGLVVSIAVSEGQEVKAGETLAVVEAMKMQNVLRAERDGTVKKVHAAPGATLAVDALILEFA 393          
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Match: A0A345ZRU5_9HYPH (Propionyl-CoA carboxylase n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZRU5_9HYPH)

HSP 1 Score: 352 bits (903), Expect = 1.460e-114
Identity = 183/261 (70.11%), Postives = 209/261 (80.08%), Query Frame = 1
Query:    1 ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPTGIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELLLDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQVRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMPGLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDSLAVDAVIMEFA 783
            ALDAFV+DGIRHNIPF+SALMAH RWQ+G+LSTGFIAEE+P GFHP  P G     IAAVAAA+DHVLGERKR+ISGQ+ G+ VTR+ +R V  G  E+ L+V RE   IAV      G  GA R L S WKPGDP+W G +DG+AVAVQVRP+ NGF LA+RGVE KAYVYT  EA  ARLMPVK+  DTGK +LCPMPGLV+SIAV +GQE+KAGET+AVVEAMKM+NVLRAE DGTVK I A PGDSLAVDAVI+EFA
Sbjct:  411 ALDAFVIDGIRHNIPFLSALMAHPRWQSGKLSTGFIAEEFPQGFHPHPPEGERADVIAAVAAAVDHVLGERKRQISGQIAGKAVTRESQRAVWLGEHEVRLEVKRENGTIAVQL----GGQGAWRHLASDWKPGDPIWNGAIDGKAVAVQVRPIPNGFVLAYRGVETKAYVYTEREAAYARLMPVKQAADTGKLVLCPMPGLVVSIAVKEGQEVKAGETVAVVEAMKMENVLRAEIDGTVKKINAKPGDSLAVDAVILEFA 667          
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Match: A0A258JIV6_9BRAD (Propionyl-CoA carboxylase (Fragment) n=1 Tax=Bradyrhizobium sp. 35-63-5 TaxID=1970326 RepID=A0A258JIV6_9BRAD)

HSP 1 Score: 339 bits (869), Expect = 2.720e-114
Identity = 178/261 (68.20%), Postives = 204/261 (78.16%), Query Frame = 1
Query:    1 ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPTGIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELLLDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQVRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMPGLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDSLAVDAVIMEFA 783
            ALDAFV+DGIRHNIPF+SALMAH RW++G LSTGFIAEE+P+GFHPQAP G     +AAVAAAIDHVLGERKR ISGQMTGR V R+  R V  G TE  L+V RE   IAV     D      R L S WKPGD +W G ++   VAVQVR + NGFAL++RGVE+K YVYT  EA  ARLMP+K+ PD GKF+LCPMPGLV+S+AV +GQE+KAGET+AVVEAMKM+NVLRAE DGTVK I A PGDSLAVDAVI+EFA
Sbjct:   42 ALDAFVIDGIRHNIPFLSALMAHPRWKSGNLSTGFIAEEFPEGFHPQAPDGERAEVLAAVAAAIDHVLGERKRNISGQMTGRVVVREGNRAVWLGDTEYKLEVKRENGTIAVR--FPDRATSDVRHLASDWKPGDFLWSGTINSHPVAVQVRHLPNGFALSYRGVESKVYVYTEREAAYARLMPIKQAPDMGKFVLCPMPGLVVSVAVTEGQEVKAGETVAVVEAMKMENVLRAEVDGTVKKINAKPGDSLAVDAVIVEFA 300          
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Match: W3RGV6_9BRAD (Propionyl-CoA carboxylase n=1 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RGV6_9BRAD)

HSP 1 Score: 350 bits (897), Expect = 1.290e-113
Identity = 180/261 (68.97%), Postives = 209/261 (80.08%), Query Frame = 1
Query:    1 ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPTGIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELLLDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQVRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMPGLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDSLAVDAVIMEFA 783
            ALDAF +DGIRHN+PF+SA+M H RW+ G+LSTGFIAEE+P GF P+AP G V   IAAVAAAIDHV+GERKRRISGQM GR VTR+RRR V     E+ L+VAR+  GIAV  I+ +G+ G    LVSSWKPGDP W G + G+ VAVQVRP ANGF LAH+GVE  AYV+T  EA+AARLMP++   DTGK LLCPMPGLV+SI V++GQE+KAGETLAVVEAMKMQNVLRAERDG VKTI A  G +LAVDA I+EFA
Sbjct:  411 ALDAFYIDGIRHNVPFLSAVMQHPRWKEGRLSTGFIAEEFPGGFAPRAPEGEVARCIAAVAAAIDHVIGERKRRISGQMIGRPVTRERRRAVWLDRVEIPLEVARDGDGIAVRFIEANGEPGVGATLVSSWKPGDPTWHGTIGGQPVAVQVRPFANGFRLAHQGVEVAAYVFTEFEAQAARLMPLEVKADTGKKLLCPMPGLVVSIDVSEGQEVKAGETLAVVEAMKMQNVLRAERDGVVKTIHAKAGATLAVDAPILEFA 671          
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Match: UPI001CD74D8D (biotin/lipoyl-binding protein n=1 Tax=Bradyrhizobium sp. BRP20 TaxID=2793822 RepID=UPI001CD74D8D)

HSP 1 Score: 334 bits (857), Expect = 6.480e-113
Identity = 171/261 (65.52%), Postives = 203/261 (77.78%), Query Frame = 1
Query:    1 ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPTGIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELLLDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQVRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMPGLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDSLAVDAVIMEFA 783
            ALD+F VDGIRHNIPF+SALM H RW+ G+LSTGFIAEE+P GF  + P G V   IAAV AAIDHVLGERKR+ISGQ+ GR V R+RRR V     E+LL+VARE   I +  ID DGK+G   +L S+WKPGDPVW+G +D   VAVQVRP+ANG  LAH+GVE   YV+T  EA +ARLMPV    DTGK LLCPMPGL++SIAV +GQE+KAGE LAVVEAMKMQNVLRAE+DG VK I A+ G +LA+DA+I+EF+
Sbjct:   10 ALDSFYVDGIRHNIPFLSALMHHPRWREGRLSTGFIAEEFPKGFAVRVPEGEVARRIAAVGAAIDHVLGERKRQISGQLGGRIVQRERRRAVWLDRQEILLEVAREGEAITIRFIDADGKVGKAHLLQSAWKPGDPVWQGTIDDHLVAVQVRPIANGIRLAHQGVEVPVYVWTEAEATSARLMPVTTAADTGKKLLCPMPGLIVSIAVTEGQEVKAGEALAVVEAMKMQNVLRAEQDGAVKKIHASAGATLAIDALILEFS 270          
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Match: UPI000F7440C3 (biotin/lipoyl-binding protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=UPI000F7440C3)

HSP 1 Score: 333 bits (855), Expect = 3.290e-112
Identity = 178/261 (68.20%), Postives = 200/261 (76.63%), Query Frame = 1
Query:    1 ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPTGIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELLLDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQVRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMPGLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDSLAVDAVIMEFA 783
            ALDAF VDGIRHNIPF+SALM H RW+ G+LSTGFIAEE+P GF  +AP G +   +AAV AAIDHVLGERKR+ISGQM GR V R+RRR V     E+ LDVARE   IAV  I  DG  G    LVSSW PG+PVW+G +DG  VAVQVR + NGF LAH+G E   YV+T  EA +ARLMPV    DTGK LLCPMPGLV+SIAV +GQEIKAGETLAVVEAMKMQNVLRAERDGTVK I A  G +LAVDA+I+EFA
Sbjct:   37 ALDAFYVDGIRHNIPFLSALMNHPRWREGRLSTGFIAEEFPKGFSARAPEGEIARRLAAVGAAIDHVLGERKRQISGQMGGRVVLRERRRAVWLDRAEIALDVAREDDAIAVRFIGADGLPGNPHNLVSSWVPGEPVWQGTIDGNFVAVQVRAINNGFRLAHQGFEVPVYVFTETEATSARLMPVVSAADTGKKLLCPMPGLVVSIAVTEGQEIKAGETLAVVEAMKMQNVLRAERDGTVKKIHAAAGATLAVDALILEFA 297          
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Match: A0A6P1BM57_9BRAD (Propionyl-CoA carboxylase (Fragment) n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A6P1BM57_9BRAD)

HSP 1 Score: 331 bits (848), Expect = 1.110e-111
Identity = 175/261 (67.05%), Postives = 200/261 (76.63%), Query Frame = 1
Query:    1 ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPTGIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELLLDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQVRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMPGLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDSLAVDAVIMEFA 783
            ALDAF VDGIRHNIPF+SALM H RW+ G+LSTGFIAEE+P GF  +AP G +   +AAV AAIDHVLGERKR+ISGQM GR V R+RRR V     E+ LDVARE+  I V  I  DG  G    LVSSW PG+PVW+G +DG  VAVQVR + NGF LAH+G E   YV+T  EA +A+LMPV    DTGK LLCPMPGLV+SIAV +GQE+KAGETLAVVEAMKMQNVLRAERDGTVK I A  G +LAVDA+I+EFA
Sbjct:    1 ALDAFYVDGIRHNIPFLSALMNHPRWREGRLSTGFIAEEFPKGFSARAPEGEIARRLAAVGAAIDHVLGERKRQISGQMGGRVVLRERRRAVWLERAEIALDVARESDAITVRFIGADGLPGNPHNLVSSWVPGEPVWQGTIDGNFVAVQVRAINNGFRLAHQGFEVPVYVFTETEATSAQLMPVVSAADTGKKLLCPMPGLVVSIAVTEGQEVKAGETLAVVEAMKMQNVLRAERDGTVKKIHAAAGATLAVDALILEFA 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12595.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EYY1_9HYPH1.010e-12474.71Propionyl-CoA carboxylase n=1 Tax=Rhodoplanes sp. ... [more]
UPI000A4DAAA72.300e-11567.43biotin/lipoyl-binding protein n=4 Tax=Bradyrhizobi... [more]
A0A3A0F8H8_9PROT4.090e-11569.35Propionyl-CoA carboxylase n=1 Tax=Proteobacteria b... [more]
A0A4Q7G2G8_9BRAD6.410e-11568.97Propionyl-CoA carboxylase (Fragment) n=3 Tax=Brady... [more]
A0A345ZRU5_9HYPH1.460e-11470.11Propionyl-CoA carboxylase n=1 Tax=Pseudolabrys tai... [more]
A0A258JIV6_9BRAD2.720e-11468.20Propionyl-CoA carboxylase (Fragment) n=1 Tax=Brady... [more]
W3RGV6_9BRAD1.290e-11368.97Propionyl-CoA carboxylase n=1 Tax=Afipia sp. P52-1... [more]
UPI001CD74D8D6.480e-11365.52biotin/lipoyl-binding protein n=1 Tax=Bradyrhizobi... [more]
UPI000F7440C33.290e-11268.20biotin/lipoyl-binding protein n=4 Tax=Bradyrhizobi... [more]
A0A6P1BM57_9BRAD1.110e-11167.05Propionyl-CoA carboxylase (Fragment) n=2 Tax=Brady... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12595contigP-wetherbeei_contig12595:232..1017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1429916.X566_22670
Preferred namepccA
PFAMsBiotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2
Model size786
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00097,RC00609
KEGG koko:K01965
KEGG ReactionR01859
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00373,M00741
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004658,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009374,GO:0009987,GO:0016421,GO:0016874,GO:0016885,GO:0017144,GO:0019752,GO:0019842,GO:0019899,GO:0031406,GO:0031974,GO:0032787,GO:0033218,GO:0033293,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0070013,GO:0071704,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901681
Exons1
Evalue2.11e-114
EggNOG OGsCOG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,2TRC2@28211|Alphaproteobacteria,3JSG7@41294|Bradyrhizobiaceae
EC6.4.1.3
DescriptionBiotin carboxylase C-terminal domain
Cds size786
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.0253623-CDS-P-wetherbeei_contig12595:231..10171683185954.0253623-CDS-P-wetherbeei_contig12595:231..1017Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12595 232..1017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12595.1.1prot_P-wetherbeei_contig12595.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12595 232..1017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12595.1.1

>prot_P-wetherbeei_contig12595.1.1 ID=prot_P-wetherbeei_contig12595.1.1|Name=mRNA_P-wetherbeei_contig12595.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp
ALDAFVVDGIRHNIPFVSALMAHSRWQAGQLSTGFIAEEYPDGFHPQAPT
GIVGGTIAAVAAAIDHVLGERKRRISGQMTGREVTRDRRRVVRFGGTELL
LDVAREAHGIAVHPIDTDGKMGATRVLVSSWKPGDPVWEGFVDGEAVAVQ
VRPVANGFALAHRGVEAKAYVYTMLEAEAARLMPVKKPPDTGKFLLCPMP
GLVISIAVAQGQEIKAGETLAVVEAMKMQNVLRAERDGTVKTIKANPGDS
LAVDAVIMEFA*
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mRNA from alignment at P-wetherbeei_contig12595:232..1017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12595.1.1 ID=mRNA_P-wetherbeei_contig12595.1.1|Name=mRNA_P-wetherbeei_contig12595.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig12595:232..1017+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCGATGCCTTCGTGGTCGACGGCATCCGCCACAACATTCCGTTCGT ATCCGCCCTGATGGCGCATTCGCGCTGGCAGGCGGGCCAGTTGTCGACCG GCTTCATCGCCGAGGAATATCCCGACGGCTTCCATCCGCAGGCCCCGACC GGCATCGTCGGCGGGACGATCGCCGCGGTCGCGGCCGCCATCGACCACGT GCTGGGCGAGCGCAAGCGGCGGATATCGGGTCAGATGACCGGCCGTGAGG TGACGCGGGATCGCCGCCGCGTGGTGCGGTTCGGCGGCACGGAGCTTCTG CTCGATGTCGCCCGCGAAGCCCACGGCATCGCGGTGCATCCCATCGATAC CGACGGCAAGATGGGCGCCACGCGCGTGCTGGTCTCGTCCTGGAAGCCGG GCGATCCGGTCTGGGAGGGCTTTGTCGATGGCGAAGCGGTGGCGGTGCAG GTGCGCCCGGTCGCCAACGGCTTTGCGTTGGCGCATCGCGGTGTCGAGGC GAAGGCCTACGTTTACACCATGCTGGAGGCTGAGGCCGCGCGGTTGATGC CGGTGAAGAAGCCGCCGGATACAGGAAAATTCCTGCTCTGCCCGATGCCG GGGCTGGTGATCTCCATCGCGGTCGCACAAGGCCAGGAGATCAAGGCCGG CGAGACGCTCGCTGTGGTCGAGGCGATGAAGATGCAGAACGTTTTGCGTG CGGAACGCGACGGCACGGTGAAGACGATCAAGGCGAATCCGGGCGACAGC CTCGCGGTCGATGCCGTGATCATGGAGTTCGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12595:232..1017+

>mRNA_P-wetherbeei_contig12595.1.1 ID=mRNA_P-wetherbeei_contig12595.1.1|Name=mRNA_P-wetherbeei_contig12595.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig12595:232..1017+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCGATGCCTTCGTGGTCGACGGCATCCGCCACAACATTCCGTTCGT
ATCCGCCCTGATGGCGCATTCGCGCTGGCAGGCGGGCCAGTTGTCGACCG
GCTTCATCGCCGAGGAATATCCCGACGGCTTCCATCCGCAGGCCCCGACC
GGCATCGTCGGCGGGACGATCGCCGCGGTCGCGGCCGCCATCGACCACGT
GCTGGGCGAGCGCAAGCGGCGGATATCGGGTCAGATGACCGGCCGTGAGG
TGACGCGGGATCGCCGCCGCGTGGTGCGGTTCGGCGGCACGGAGCTTCTG
CTCGATGTCGCCCGCGAAGCCCACGGCATCGCGGTGCATCCCATCGATAC
CGACGGCAAGATGGGCGCCACGCGCGTGCTGGTCTCGTCCTGGAAGCCGG
GCGATCCGGTCTGGGAGGGCTTTGTCGATGGCGAAGCGGTGGCGGTGCAG
GTGCGCCCGGTCGCCAACGGCTTTGCGTTGGCGCATCGCGGTGTCGAGGC
GAAGGCCTACGTTTACACCATGCTGGAGGCTGAGGCCGCGCGGTTGATGC
CGGTGAAGAAGCCGCCGGATACAGGAAAATTCCTGCTCTGCCCGATGCCG
GGGCTGGTGATCTCCATCGCGGTCGCACAAGGCCAGGAGATCAAGGCCGG
CGAGACGCTCGCTGTGGTCGAGGCGATGAAGATGCAGAACGTTTTGCGTG
CGGAACGCGACGGCACGGTGAAGACGATCAAGGCGAATCCGGGCGACAGC
CTCGCGGTCGATGCCGTGATCATGGAGTTCGCCTGA
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