mRNA_P-wetherbeei_contig1256.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1256.2.1
Unique NamemRNA_P-wetherbeei_contig1256.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Match: A0A2V0P648_9CHLO (Ig-like domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P648_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 2.060e-12
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   25 PPLLFSVEAAGTYERRRVHGYGHLALPRVPGAYDLLVQTWRPVGTVRQRLQDWHIGGARRLADPSYAGAWPSNSAATATPAGP--AAAGDAATGRGTFLSKLGFRTEPAGNVRIRLYVVEQ 381
            P L   V +   ++R    GYG   L   PG+    VQTW+P+GT R R Q++ IGG+  LADPSY      + AA   P G      G    G    ++K GF+T  +G V++RL+ ++Q
Sbjct:  431 PVLTLQVCSYDNWDRYTCEGYGWTQLDASPGSAARCVQTWKPLGTRRDRQQEFFIGGSLELADPSYVALKAPSEAAGGAPLGAILGGGGRGRAGGAPGVNKYGFQTVSSGRVKLRLHCLQQ 551          
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Match: A0A1Y1I4J4_KLENI (B9 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I4J4_KLENI)

HSP 1 Score: 72.0 bits (175), Expect = 3.450e-12
Identity = 44/114 (38.60%), Postives = 58/114 (50.88%), Query Frame = 1
Query:   25 PPLLFSVEAAGTYERRRVHGYGHLALP-RVPGAYDLLVQTWRPVGTVRQRLQDWHIGGARRLADPSYAGAWPSNSAATATPAGPAAAGDAATGRGTFLSKLGFRTEPAGNVRIR 363
            P L F V +   ++R R  GYG+LAL    PG  + +V TWRPVG+VRQ+L  + +GG  +L D +Y                           G  LSK GFRT+PAG V+IR
Sbjct:  300 PILYFHVASYDRWDRCRPEGYGYLALAGHCPGTREHVVDTWRPVGSVRQQLHSFFVGGGPQLRDVTYVR-------------------QPVDWAGPVLSKYGFRTQPAGQVKIR 394          
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Match: A0A8J2WX94_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX94_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.340e-10
Identity = 46/119 (38.66%), Postives = 57/119 (47.90%), Query Frame = 1
Query:   25 PPLLFSVEAAGTYERRRVHGYGHLALPRVPGAYDL-LVQTWRPVGTVRQRLQDWHIGGARRLADPSYAGAWPSNSAATATPAGPAAAGDAATGRGTFLSKLGFRTEPAGNVRIRLYVVE 378
            P    +V A   +ER  V GYGH  LP  P       +QTW PVG +R +LQD+ +GGA RL D  YA A P +         P  +G        FL K GF T  AG + +R   VE
Sbjct:  502 PRCYVAVFARRRFERHTVEGYGHFRLPAKPQPLSRERLQTWAPVGRIRDQLQDFFLGGAHRLKDLRYA-AHPPDEWGAHPDRPPKDSG--------FLCKFGFMTRAAGCIDVRCGAVE 611          
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Match: A0A836BAV3_9CHLO (Ig-like domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BAV3_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 1.040e-9
Identity = 45/131 (34.35%), Postives = 61/131 (46.56%), Query Frame = 1
Query:   19 GGPP--------LLFSVEAAGTYERRRVHGYGHLALPR--VPGAYDLLVQTWRPVGTVRQRLQDWHIGGARRLADPSYAGAWPSNSAATATPAGPAAAGDAATGRGTFLSKLGFRTEPAGNVRIRLYVVEQ 381
            GGPP        + F V       R    GYG LAL    VPGA    + TWRP+GT+R +  ++ +GG+  LAD +Y            TP+G           G  L+K GF+TE  G +++RL  V Q
Sbjct:  938 GGPPPAANKLPVMFFQVCTLDKLNRYTSQGYGWLALADAGVPGAATHRIATWRPLGTIRDKRDEFFVGGSAELADLAY----------LTTPSG---------FNGRILNKYGFKTESVGALKVRLNTVAQ 1049          
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Match: A0A7S3H9I5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9I5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.490e-9
Identity = 35/117 (29.91%), Postives = 58/117 (49.57%), Query Frame = 1
Query:   25 PPLLFSVEAAGTYERRRVHGYGHLALPRVPGAYDLLVQTWRPVGTVRQRLQDWHIGGARRLADPSYAGAWPSNSAATATPAGPAAAGDAATGRGTFLSKLGFRTEPAGNVRIRLYVV 375
            P ++F V +     R ++ GYG   L   PG++DL ++TWRPVG +R ++QD+ +G A  L D  +                     D+     + L++ G  T  +G+VRIR++ V
Sbjct:  400 PTMVFQVFSTDWLGRHKLEGYGFHHLSDQPGSHDLEIRTWRPVGRIRDQMQDFFLGNAAYLKDEHFV--------------------DSVNKTASALNRFGVLTHSSGSVRIRVHTV 496          
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Match: A0A2K3D211_CHLRE (Ig-like domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D211_CHLRE)

HSP 1 Score: 63.9 bits (154), Expect = 2.640e-9
Identity = 45/131 (34.35%), Postives = 61/131 (46.56%), Query Frame = 1
Query:   19 GGPP--------LLFSVEAAGTYERRRVHGYGHLALPR--VPGAYDLLVQTWRPVGTVRQRLQDWHIGGARRLADPSYAGAWPSNSAATATPAGPAAAGDAATGRGTFLSKLGFRTEPAGNVRIRLYVVEQ 381
            GGPP        + F V       R    GYG LAL    VPGA    V+TWRP+GT+R +  ++ +GG+  L D +Y            TP+G           G  L+K GF+TE  G +++RL  V Q
Sbjct:  886 GGPPPAANKLPAMFFQVCTLDKLNRYTSQGYGWLALADAGVPGAATHRVKTWRPLGTIRDKRNEFFVGGSAELNDLAY----------LTTPSG---------FNGRILNKYGFKTESVGALKVRLNTVAQ 997          
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Match: A8JDM5_CHLRE (Centriole proteome protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JDM5_CHLRE)

HSP 1 Score: 63.9 bits (154), Expect = 2.670e-9
Identity = 45/131 (34.35%), Postives = 61/131 (46.56%), Query Frame = 1
Query:   19 GGPP--------LLFSVEAAGTYERRRVHGYGHLALPR--VPGAYDLLVQTWRPVGTVRQRLQDWHIGGARRLADPSYAGAWPSNSAATATPAGPAAAGDAATGRGTFLSKLGFRTEPAGNVRIRLYVVEQ 381
            GGPP        + F V       R    GYG LAL    VPGA    V+TWRP+GT+R +  ++ +GG+  L D +Y            TP+G           G  L+K GF+TE  G +++RL  V Q
Sbjct:  946 GGPPPAANKLPAMFFQVCTLDKLNRYTSQGYGWLALADAGVPGAATHRVKTWRPLGTIRDKRNEFFVGGSAELNDLAY----------LTTPSG---------FNGRILNKYGFKTESVGALKVRLNTVAQ 1057          
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Match: A0A061RT25_9CHLO (Meckel syndrome type 1 protein n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RT25_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 1.450e-7
Identity = 39/121 (32.23%), Postives = 59/121 (48.76%), Query Frame = 1
Query:   25 PPLLFSVEAAGTYERRRVHGYGHLALPRVP--GAYDLLVQTWRPVGTVRQRLQDWHIGGARRLADPSYAGAWPSNSAATATPAGPAAAGDAATGRGTFLSKLGFRTEPAGNVRIRLYVVEQ 381
            P + F V     + R  V GY  L+L  V   G     + TWRP+G+V+ RL  + +GG+  L D +YAG  P +                   +G FLSK GF++E +G +++R Y + Q
Sbjct:  457 PVIYFQVNTYDAWGRYTVQGYTWLSLHCVGRGGCSAHSLATWRPLGSVQDRLHGFFVGGSAELKDMTYAGV-PRDF------------------QGGFLSKFGFKSETSGTLKVRAYAMRQ 558          
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Match: UPI000719C6F7 (B9 domain-containing protein 2-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C6F7)

HSP 1 Score: 56.6 bits (135), Expect = 2.470e-7
Identity = 24/66 (36.36%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   19 GGPPLLFSVEAAGTYERRRVHGYGHLALPRVPGAYDLLVQTWRPVGTVRQRLQDWHIGGARRLADP 216
            G P   F V    T+ R  ++GYG   +P  PG ++L   TWRPVG++R+++  + +GG  +L +P
Sbjct:   72 GWPKFHFQVWHQDTFGRNELYGYGFCHVPTSPGIHELECATWRPVGSLREQISQYFLGGGLQLRNP 137          
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Match: UPI001E2779E5 (B9 domain-containing protein 2 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2779E5)

HSP 1 Score: 56.6 bits (135), Expect = 2.510e-7
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1
Query:   13 VTGGPPLLFSVEAAGTYERRRVHGYGHLALPRVPGAYDLLVQTWRPVGTVRQRLQDWHIGGARRLADP 216
            + G P L   V       R  + GYG L +P +PG +DL   TWRPVGT++++L  + +GG  +L +P
Sbjct:   70 IQGWPKLYLQVYHLDWLGRSHLFGYGLLTIPTLPGQHDLDCYTWRPVGTLQEKLVQFFLGGGPQLKNP 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1256.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A2V0P648_9CHLO2.060e-1236.36Ig-like domain-containing protein n=1 Tax=Raphidoc... [more]
A0A1Y1I4J4_KLENI3.450e-1238.60B9 domain-containing protein n=1 Tax=Klebsormidium... [more]
A0A8J2WX94_9STRA7.340e-1038.66Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A836BAV3_9CHLO1.040e-934.35Ig-like domain-containing protein n=1 Tax=Chlamydo... [more]
A0A7S3H9I5_9STRA2.490e-929.91Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2K3D211_CHLRE2.640e-934.35Ig-like domain-containing protein n=1 Tax=Chlamydo... [more]
A8JDM5_CHLRE2.670e-934.35Centriole proteome protein n=1 Tax=Chlamydomonas r... [more]
A0A061RT25_9CHLO1.450e-732.23Meckel syndrome type 1 protein n=3 Tax=Tetraselmis... [more]
UPI000719C6F72.470e-736.36B9 domain-containing protein 2-like n=1 Tax=Priapu... [more]
UPI001E2779E52.510e-738.24B9 domain-containing protein 2 n=1 Tax=Harmonia ax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1256contigP-wetherbeei_contig1256:6965..7345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHG4
Preferred nameMKS1
PFAMsB9-C2
Model size381
Max annot lvl2759|Eukaryota
KEGG koko:K03030,ko:K19332
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001501,GO:0001578,GO:0001763,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0002009,GO:0003007,GO:0003156,GO:0003205,GO:0003206,GO:0003264,GO:0003266,GO:0003271,GO:0003279,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007568,GO:0007610,GO:0008150,GO:0008340,GO:0008589,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010259,GO:0010646,GO:0010669,GO:0014020,GO:0015630,GO:0016020,GO:0016043,GO:0016331,GO:0021915,GO:0022008,GO:0022406,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030111,GO:0030154,GO:0030182,GO:0030326,GO:0030537,GO:0031175,GO:0032501,GO:0032502,GO:0032991,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035148,GO:0035177,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036064,GO:0042127,GO:0042490,GO:0042592,GO:0042733,GO:0042995,GO:0043009,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043583,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045995,GO:0048468,GO:0048513,GO:0048568,GO:0048583,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048706,GO:0048729,GO:0048731,GO:0048736,GO:0048754,GO:0048839,GO:0048856,GO:0048869,GO:0048871,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051239,GO:0051640,GO:0051641,GO:0051716,GO:0051960,GO:0060113,GO:0060119,GO:0060122,GO:0060173,GO:0060249,GO:0060271,GO:0060322,GO:0060411,GO:0060429,GO:0060562,GO:0060606,GO:0060756,GO:0060828,GO:0061008,GO:0061009,GO:0061138,GO:0061311,GO:0061822,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0090175,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901620,GO:1905330,GO:1905349,GO:1905515,GO:1990403,GO:2000026,GO:2000027,GO:2000050,GO:2000095,GO:2000136,GO:2000826
Exons1
Evalue1.68e-22
EggNOG OGsKOG4446@1|root,KOG4446@2759|Eukaryota
Ec32 ortholog descriptionB9 domain
Ec32 orthologEc-11_004170.1
Descriptionsmoothened signaling pathway involved in regulation of secondary heart field cardioblast proliferation
Cds size381
COG categoryS
BRITEko00000,ko00001,ko00002,ko01002,ko03036,ko03051,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185952.9134543-CDS-P-wetherbeei_contig1256:6964..73451683185952.9134543-CDS-P-wetherbeei_contig1256:6964..7345Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1256 6965..7345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1256.2.1prot_P-wetherbeei_contig1256.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1256 6965..7345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1256.2.1

>prot_P-wetherbeei_contig1256.2.1 ID=prot_P-wetherbeei_contig1256.2.1|Name=mRNA_P-wetherbeei_contig1256.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MASLVTGGPPLLFSVEAAGTYERRRVHGYGHLALPRVPGAYDLLVQTWRP
VGTVRQRLQDWHIGGARRLADPSYAGAWPSNSAATATPAGPAAAGDAATG
RGTFLSKLGFRTEPAGNVRIRLYVVEQ
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mRNA from alignment at P-wetherbeei_contig1256:6965..7345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1256.2.1 ID=mRNA_P-wetherbeei_contig1256.2.1|Name=mRNA_P-wetherbeei_contig1256.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig1256:6965..7345+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTCACTCGTCACTGGCGGGCCTCCGCTGCTCTTCTCGGTGGAGGC GGCCGGTACGTACGAGCGTCGCCGGGTGCATGGCTACGGGCACCTCGCTT TGCCCCGGGTCCCGGGCGCGTATGACCTGCTCGTGCAGACTTGGAGGCCC GTCGGCACAGTGCGGCAGCGGCTGCAGGATTGGCACATTGGCGGGGCACG GCGACTGGCGGATCCGAGCTACGCCGGAGCCTGGCCCAGTAATAGCGCTG CGACAGCCACTCCCGCCGGACCCGCGGCTGCCGGCGATGCTGCCACCGGC CGCGGAACCTTCCTGAGCAAGCTGGGGTTCCGCACAGAGCCAGCTGGGAA CGTCCGCATCCGGCTCTACGTGGTGGAGCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1256:6965..7345+

>mRNA_P-wetherbeei_contig1256.2.1 ID=mRNA_P-wetherbeei_contig1256.2.1|Name=mRNA_P-wetherbeei_contig1256.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig1256:6965..7345+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTCACTCGTCACTGGCGGGCCTCCGCTGCTCTTCTCGGTGGAGGC
GGCCGGTACGTACGAGCGTCGCCGGGTGCATGGCTACGGGCACCTCGCTT
TGCCCCGGGTCCCGGGCGCGTATGACCTGCTCGTGCAGACTTGGAGGCCC
GTCGGCACAGTGCGGCAGCGGCTGCAGGATTGGCACATTGGCGGGGCACG
GCGACTGGCGGATCCGAGCTACGCCGGAGCCTGGCCCAGTAATAGCGCTG
CGACAGCCACTCCCGCCGGACCCGCGGCTGCCGGCGATGCTGCCACCGGC
CGCGGAACCTTCCTGAGCAAGCTGGGGTTCCGCACAGAGCCAGCTGGGAA
CGTCCGCATCCGGCTCTACGTGGTGGAGCAA
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