mRNA_P-wetherbeei_contig12495.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12495.1.1
Unique NamemRNA_P-wetherbeei_contig12495.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12495.1.1 vs. uniprot
Match: A0A0G4GX11_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GX11_VITBC)

HSP 1 Score: 65.1 bits (157), Expect = 3.370e-10
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   31 AARGRRRLGLWSSVAWTTLTGHLLAGEERISVIW-----EGIPSDSDSGSRNGREAGGG-SGGEGSSSGGD-VWLDMYSVSAPAGVLGKLAWPFVRPMQKAFFQGIAENM 339
            AAR   R  ++++V ++T+ GHLLAGEER +V W     +G P     G R  R A    S G+G  S  D VW ++YS S P+GVLG+LA   VRP+Q+ F   +A  M
Sbjct:  149 AARPSGREVVYTAVGYSTVKGHLLAGEERFTVAWNQTPRKGGPVSRIFGLRKQRPANDSDSEGDGIESEKDGVWFEVYSYSRPSGVLGRLAAVAVRPLQRRFAADLAAKM 258          
BLAST of mRNA_P-wetherbeei_contig12495.1.1 vs. uniprot
Match: L1JWA7_GUITC (DUF1990 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JWA7_GUITC)

HSP 1 Score: 57.0 bits (136), Expect = 3.930e-8
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   91 GHLLAGEERISVIWEGI-PSDSDSGSRNGREAGGGSGGEGSSSGGDVWLDMYSVSAPAGVLGKLAWPFVRPMQKAFFQGIAENM 339
            GHL+ GEER++V+W+G  PS   S S  GR                V+  + SVSA +G++G L +PF+RPMQ  FF    ++M
Sbjct:   41 GHLIRGEERLAVLWDGYEPSKDPSSSELGR----------------VYFAIRSVSAGSGLVGSLLFPFMRPMQDRFFASQLDSM 108          
BLAST of mRNA_P-wetherbeei_contig12495.1.1 vs. uniprot
Match: W7TFL2_9STRA (DUF1990 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFL2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.910e-7
Identity = 37/98 (37.76%), Postives = 47/98 (47.96%), Query Frame = 1
Query:   46 RRLGLWSSVAWTTLTGHLLAGEERISVIWEGIPSDSDSGSRNGREAGGGSGGEGSSSGGDVWLDMYSVSAPAGVLGKLAWPFVRPMQKAFFQGIAENM 339
            +R G  ++VA +TL GHLL GEER  V +EG           GR+             GDVW D+ S S  A  LG+L  P VRP+Q  F   +   M
Sbjct:  298 KRGGAVAAVAVSTLRGHLLEGEERFCVWFEG-----------GRQ-------------GDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAM 371          
BLAST of mRNA_P-wetherbeei_contig12495.1.1 vs. uniprot
Match: A0A7S4N191_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N191_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-6
Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   55 GLWSSVAWTTLTGHLLAGEERISVIWEGIPSDSDSGSRNGREAGGGSGGEGS-----------SSGGDVWLDM----YSVSAPAGVLGKLAWPFVRPMQKAFFQ 321
            GL++S A+ TL GHLL+GEER++V +       + GS  GR +   +GG  +           + GG+ ++D+    YS +AP+ ++GKLAWP V  MQ  FF+
Sbjct:  379 GLYTSTAYATLRGHLLSGEERVTVAFR------NGGSVGGRSSLSDAGGSAAVAPLLRADGFGTGGGEGYVDVEILSYSRAAPS-IMGKLAWPLVGRMQDRFFR 475          
BLAST of mRNA_P-wetherbeei_contig12495.1.1 vs. uniprot
Match: A0A7S4NRR5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NRR5_GUITH)

HSP 1 Score: 54.3 bits (129), Expect = 1.510e-6
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   64 SSVAWTTLTGHLLAGEERISVIWEGI-PSDSDSGSRNGREAGGGSGGEGSSSGGDVWLDMYSVSAPAGVLGKLAWPFVR 297
            S VA++TL GHL+ GEER++V+W+G  PS   S S  GR                V+  + SVSA +G++G L +PF+R
Sbjct:  130 SQVAYSTLQGHLIRGEERLAVLWDGYEPSKDPSSSELGR----------------VYFAIRSVSAGSGLVGSLLFPFMR 192          
BLAST of mRNA_P-wetherbeei_contig12495.1.1 vs. uniprot
Match: A0A7S2Q3S0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3S0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.060e-5
Identity = 33/92 (35.87%), Postives = 46/92 (50.00%), Query Frame = 1
Query:   64 SSVAWTTLTGHLLAGEERISVIWEGIPSDSDSGSRNGREAGGGSGGEGSSSGGDVWLDMYSVSAPAGVLGKLAWPFVRPMQKAFFQGIAENM 339
            SS ++ TL GHLLAGEER+SVI  G  +                         DV +  +S SAP+ + G++ WPF+  MQK FF    E++
Sbjct:  219 SSASYATLDGHLLAGEERVSVILRGNDAV------------------------DVEIVSFSRSAPS-INGRIVWPFIGRMQKQFFLKEMEHL 285          
BLAST of mRNA_P-wetherbeei_contig12495.1.1 vs. uniprot
Match: A0A6V2FB26_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2FB26_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.820e-5
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   61 WSSVAWTTLTGHLLAGEERISVIWEGIPSDSDSGSRNGREAGGGSGGEGSSSGGDVWLDMYSVSAPAGVLGKLAWPFVRPMQKAFFQ 321
            ++S A+ TL GHLL+GEER++V+     S+SD+   +  E   GSGG       DV +  +S +AP+  LGKL WP +  MQ  FF+
Sbjct:  214 YTSTAYATLRGHLLSGEERVTVVLRDKKSNSDN---DVLEDDDGSGGGYV----DVEIISFSRAAPS-PLGKLVWPLIGKMQDKFFR 292          
BLAST of mRNA_P-wetherbeei_contig12495.1.1 vs. uniprot
Match: W7TBY2_9STRA (DUF1990 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBY2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.910e-5
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   58 LWSSVAWTTLTGHLLAGEERISVIWEGIPSDSDSGSRNGREAGGGSGGEGSSSGGDVWLDMYSVSAPAGVLGKLAWPFVRPMQKAFFQ 321
            +WS+VA+TT+  HL+AGEER+ VIW   P         GR         G     +VW ++ SV+   G +G+L +P  + MQ+ FFQ
Sbjct:  247 VWSAVAYTTVGRHLIAGEERMRVIW--YPR--------GRXXXXXXXXXGED---EVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQ 321          
BLAST of mRNA_P-wetherbeei_contig12495.1.1 vs. uniprot
Match: A0A4D9CTF5_9STRA (DUF1990 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTF5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.050e-5
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   49 RLGLWSSVAWTTLTGHLLAGEERISVIWEGIPSDSDSGSRNGREAGGGSGGEGSSSGGDVWLDMYSVSAPAGVLGKLAWPFVRPMQKAFFQ 321
            R  +WS+VA+TT+  HL+AGEER+ VIW   P         GR         G     +VW ++ SV+   G +G+L +P  + MQ+ FFQ
Sbjct:  318 RARVWSAVAYTTVGRHLIAGEERMRVIW--YPR--------GRGXXXXXXXXGED---EVWFEIVSVARGNGWVGRLLFPSTQRMQRHFFQ 395          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12495.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A0G4GX11_VITBC3.370e-1042.73Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
L1JWA7_GUITC3.930e-839.29DUF1990 domain-containing protein n=1 Tax=Guillard... [more]
W7TFL2_9STRA9.910e-737.76DUF1990 domain-containing protein n=3 Tax=Monodops... [more]
A0A7S4N191_9STRA1.410e-637.50Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4NRR5_GUITH1.510e-640.51Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S2Q3S0_9STRA1.060e-535.87Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A6V2FB26_9STRA2.820e-541.38Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
W7TBY2_9STRA2.910e-537.50DUF1990 domain-containing protein (Fragment) n=1 T... [more]
A0A4D9CTF5_9STRA3.050e-537.36DUF1990 domain-containing protein n=1 Tax=Nannochl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12495contigP-wetherbeei_contig12495:111..449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQ57
PFAMsDUF1990
Model size339
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.65e-09
EggNOG OGs2E8GY@1|root,2SEZ2@2759|Eukaryota
Ec32 ortholog descriptionDomain of unknown function DUF1990
Ec32 orthologEc-26_006060.1
DescriptionDomain of unknown function (DUF1990)
Cds size339
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185950.3578308-CDS-P-wetherbeei_contig12495:110..4491683185950.3578308-CDS-P-wetherbeei_contig12495:110..449Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12495 111..449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12495.1.1prot_P-wetherbeei_contig12495.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12495 111..449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12495.1.1

>prot_P-wetherbeei_contig12495.1.1 ID=prot_P-wetherbeei_contig12495.1.1|Name=mRNA_P-wetherbeei_contig12495.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
RGGNGDGGGGAARGRRRLGLWSSVAWTTLTGHLLAGEERISVIWEGIPSD
SDSGSRNGREAGGGSGGEGSSSGGDVWLDMYSVSAPAGVLGKLAWPFVRP
MQKAFFQGIAENM
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mRNA from alignment at P-wetherbeei_contig12495:111..449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12495.1.1 ID=mRNA_P-wetherbeei_contig12495.1.1|Name=mRNA_P-wetherbeei_contig12495.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig12495:111..449+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGGCGGGAATGGGGACGGCGGCGGCGGCGCTGCGCGGGGGCGGCGGCG GCTGGGACTCTGGTCGAGCGTGGCGTGGACGACACTGACGGGCCACCTGC TGGCGGGCGAGGAACGCATCAGCGTCATCTGGGAAGGCATCCCGTCCGAC AGCGATAGCGGCAGCAGGAACGGAAGAGAGGCCGGCGGCGGCAGCGGCGG CGAGGGCAGTAGCAGCGGCGGGGACGTCTGGTTGGACATGTACTCCGTGT CTGCGCCCGCAGGCGTGCTGGGAAAGCTGGCGTGGCCGTTTGTGCGGCCC ATGCAGAAAGCTTTCTTTCAAGGCATCGCGGAGAACATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12495:111..449+

>mRNA_P-wetherbeei_contig12495.1.1 ID=mRNA_P-wetherbeei_contig12495.1.1|Name=mRNA_P-wetherbeei_contig12495.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig12495:111..449+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGGCGGGAATGGGGACGGCGGCGGCGGCGCTGCGCGGGGGCGGCGGCG
GCTGGGACTCTGGTCGAGCGTGGCGTGGACGACACTGACGGGCCACCTGC
TGGCGGGCGAGGAACGCATCAGCGTCATCTGGGAAGGCATCCCGTCCGAC
AGCGATAGCGGCAGCAGGAACGGAAGAGAGGCCGGCGGCGGCAGCGGCGG
CGAGGGCAGTAGCAGCGGCGGGGACGTCTGGTTGGACATGTACTCCGTGT
CTGCGCCCGCAGGCGTGCTGGGAAAGCTGGCGTGGCCGTTTGTGCGGCCC
ATGCAGAAAGCTTTCTTTCAAGGCATCGCGGAGAACATG
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