mRNA_P-wetherbeei_contig12463.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12463.1.1
Unique NamemRNA_P-wetherbeei_contig12463.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Match: D8LDD4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 7.040e-26
Identity = 71/157 (45.22%), Postives = 91/157 (57.96%), Query Frame = 1
Query:   22 IELPKPFGILLEEVSGG--GVRVEGLIDGGNAKKSGKITPGMRLLTIAGRDYSTSTFDEVMATLVKEEA--PVSLTFTASAKPLARALEEEARREPPVAGRTTAVLTVIAPGGGSPKDIKAVVGANLRRVLLDNKVQLYDFVGTVSNCNGAGQCGSC 480
            + LPKP GI LEEV  G  GVRV G+++GG AK+SG+I   M LL I G+D +++ FD VM TLV   A  P+ L F   +              P VA      LTV   GG +   +KA  G NLR+ LL  KV++YD VG ++NCNG GQCG+C
Sbjct:   61 VSLPKPLGIQLEEVVPGSPGVRVAGVVEGGTAKESGEIGADMILLEIGGKDVTSAMFDLVMDTLVAAPAGVPIDLVFRDPSAAAXXXXXXXXXXXPAVAMGVPCELTV---GGVT---LKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTC 211          
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Match: A0A836CP36_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP36_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.420e-22
Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   22 IELPKPFGILLEEVSGG---GVRVEGLIDGGNAKKSGKITPGMRLLTIAGRDYSTSTFDEVMATLV--KEEAPVSLTFTASAKPLARALEEEARREPPVAGRTTAVLTVIAPGGGSPKDIKAVVGANLRRVLLDNKVQLYDFVGTVSNCNGAGQCGSC 480
            + LPKP GI LEE+  G   GVRV+ + +GG+A KSG + PGM L+++ G D +T  FD +M  L+   +  P+ L+F+         LE +  + P         L V+ P G +   +KA  G NLR+VL+  KV +Y+ +  ++NCNGAGQCG+C
Sbjct:   43 VSLPKPLGIALEELQPGKPAGVRVQEVREGGSAIKSGDVLPGMVLVSLNGIDCTTKDFDTIMDMLIGATDSQPIQLSFS---------LEVDDEQIPQPIKTGPCELHVLLPKGETMV-LKARNGDNLRKVLMAGKVSIYEGLAVMTNCNGAGQCGTC 190          
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Match: A0A7S4BLD9_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BLD9_CHRCT)

HSP 1 Score: 94.0 bits (232), Expect = 8.640e-20
Identity = 65/168 (38.69%), Postives = 93/168 (55.36%), Query Frame = 1
Query:    1 MSTESIIIELPKPFGILLEEVSGG-GVRVEGLIDGGNAKKSGKITPGMRLLTIAGRDYSTSTFDEVMATLVKEEAPVSL------TFTA-SAKPLARALEEEARREPPVAGRTTAVLTVIAPGGGSPKDIKAVVGANLRRVLLDNKVQLYDFVGTVSNCNGAGQCGSC 480
            ++T S+ ++LPKP G+LLEE +GG G  V  LI+GG+A  S  +  G  +++I G+D S++ FDE+M  L      V L      T TA SA   A  + + A+ +   A         IA  GG    I+   G  LR+VL DNK +LY  +G ++NC G GQCG+C
Sbjct:  151 LTTTSVSVQLPKPLGVLLEERAGGAGAEVASLIEGGSALSSNLVFEGDVVVSIDGKDVSSTGFDEIMEMLGDAGEIVDLVLERQVTDTAESAAGAAETVTKSAQVDEEEAPEPMPATATIAIEGGQA--IEVPTGQLLRKVLQDNKQELYSLMGKMTNCGGVGQCGTC 316          
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Match: A0A7S3YA98_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA98_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 4.340e-19
Identity = 62/173 (35.84%), Postives = 92/173 (53.18%), Query Frame = 1
Query:    4 STESIIIELPKPFGILLEEVSGG---GVRVEGLIDGGNAKKSGKITPGMRLLTIAGRDYSTSTFDEVMATLVKEEAPVSLTFTASA-----------KPLARALEEEARREPPVAGRTTAVLTVIAPGGGSPKDIKAVVGANLRRVLLDNKVQLYDFVGTVSNCNGAGQCGSC 480
            S ++ +  L KP G++LEEV  G   GV +  +   G+A + G+I  GMRLL + G+D ++ TFDEVM  L+  +  V +T  +S+           +PL    E+    EPP  G       VI   G   + +    GANLR+ LL N V++Y  +  ++NCNG GQCG+C
Sbjct:   48 SQDAQVFSLAKPMGLVLEEVEEGKASGVSIVDINPDGSAGRIGEIQKGMRLLAVNGQDCTSCTFDEVMDKLIAADGEVQVTLQSSSPKQTLVVPDAIQPLEAPKEKV---EPPPEGP----FEVIVLNGEEKRVLTIQAGANLRKELLANGVEVYAGMAKLTNCNGGGQCGTC 213          
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Match: A0A7S2FMP7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FMP7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.120e-17
Identity = 64/160 (40.00%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   16 IIIELPKPFGILLEE-VSGGGVRVEGLIDGGNAKKSGKITPGMRLLTIAGRDYSTSTFDEVMATLVKEEAPVSLTF----TASAKPLARALEEEARREPPVAGRTTAVLTVIAPGGGSPKDIKAVVGANLRRVLLDNKVQLYDFVGTVSNCNGAGQCGSC 480
            I +E+PKP GI+ EE  SGGG+ V  L++G NA KS  I  G  L+ + G      +FDE M  L+      +LTF     +   P                   TA LTV+A G    K I    G  LR VLL+N V LY   G  SNCNGAGQCG+C
Sbjct:   51 IEVEIPKPMGIVFEENASGGGLYVFELVEG-NAAKSAVIEAGDNLVAVEGSSVVGLSFDEAMDKLMAAPPVAALTFFRGDLSDMAPPTXXXXXXXXXXXXXXXXXTAELTVLAEGSPEVK-ITTQAGTILRNVLLENGVSLYTLWGAASNCNGAGQCGTC 208          
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Match: A0A7S1XJK9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJK9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.460e-16
Identity = 62/173 (35.84%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   22 IELPKPFGILLEEV----SGGGVRVEGLIDGGNAKKSGKITPGMRLLTIAGRDYSTSTFDEVMATLVKEEAPVSLTFTASAKPLARALEEEARREPPVAGRTTAVLTVIAPGGGSPKDI--------------KAVV--GANLRRVLLDNKVQLYDFVGTVSNCNGAGQCGSC 480
            ++L KP G++LEE     +  GV V  L   G A + G++  GM LL +AG+D   +TFDE M  L+   + V L     A P   A + E   E P A        V AP     +D+              K  V  G  LR  L  +KV +YD +G V+NCNGAGQCG+C
Sbjct:   67 VQLEKPLGMVLEEAGEEGAAAGVVVVELAPDGAAARDGRVREGMALLEVAGQDVGAATFDEAMDALIGAPSVVELVLQGEA-PAPAAEQVEPEEEVPAA----VAEDVPAPAADDAEDVDDGRPASVVVDGSTKITVERGEILRNALRGSKVDVYDLMGKVTNCNGAGQCGTC 234          
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Match: A0A7S2BPU3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BPU3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.510e-15
Identity = 61/155 (39.35%), Postives = 74/155 (47.74%), Query Frame = 1
Query:   31 PKPFGILLEE-VSGGGVRVEGLIDGGNAKKSGKITPGMRLLTIAGRDYSTSTFDEVMATLVKEEAPVSLTF----TASAKPLARALEEEARREPPVAGRTTAVLTVIAPGGGSPKDIKAVVGANLRRVLLDNKVQLYDFVGTVSNCNGAGQCGSC 480
            PKP  I+ EE  SGGG+ V  L++G NA KS  I  G  L+ + G      +FDE M  L+      +LTF     +   P                   TA LTV+A G    K I    G  LR VLL+N V LY   G  SNCNGAGQCG+C
Sbjct:    1 PKPMCIVFEENASGGGLYVFELVEG-NAAKSAVIEAGDNLVAVEGSSVVGLSFDEAMDKLMAAPPVAALTFFRGDLSDMAPPTXXXXXXXXXXXXXXXXXTAELTVLAEGSPEVK-ITTQAGTILRNVLLENGVSLYTLWGAASNCNGAGQCGTC 153          
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Match: A0A8J5XJU3_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJU3_DIALT)

HSP 1 Score: 79.0 bits (193), Expect = 1.060e-14
Identity = 63/178 (35.39%), Postives = 84/178 (47.19%), Query Frame = 1
Query:   13 SIIIELPKPFGILLEEVSGGG----VRVEGLIDGGNAKKSGKITPGMRLLTIAGRDYSTSTFDEVMATLVKEEAPVSLTFT----------ASAKPLARALEEEARREPPVAG-------RTTAVLTVIAPGGGSPKD-IKAVVGANLRRVLLDNKVQLYDFVGTVSNCNGAGQCGSC 480
            ++ I LPKP G++LEEV+       V V  ++DGG+A  SG I  GMRLL++   D +T   +  M+ +V  E  V L  T          A A PL         R  P          R  A ++V     G P   +    GA LR  LL  KV +Y  VG ++NC GAGQCG+C
Sbjct:   49 TVAIALPKPLGLVLEEVADTAGAPFVLVAEVVDGGSAASSGAIRTGMRLLSV--NDVATLELEPAMSLIVAAEGDVRLVLTSDAPAARQTAAVAPPLTPPXXXXXXRAAPAXXXXXXXPPRGPATVSVTVQQSGKPDTRLPMPQGAILRTELLKAKVDVYTMVGKMTNCGGAGQCGTC 224          
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Match: B5Y5K8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y5K8_PHATC)

HSP 1 Score: 75.9 bits (185), Expect = 1.290e-13
Identity = 54/157 (34.39%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   22 IELPKPFGILLEEVSGG---GVRVEGLIDGGNAKKSGKITPGMRLLTIAGRDYSTSTFDEVMATLVKEEAPVSLTFTASAKPLARALEEEARREPPVAGRTTAVLTVIAPGGGSPKDIKAVVGANLRRVLLDNKVQLYDFVGT-VSNCNGAGQCGSC 480
            + L KP G++LEEV  G   GV V+ + + G++        G++L+T+AG D ++ TFDEVM  ++     V L   +  +  +   EE++    P     T+V   +   G    DI+  VG NLR+VLLDN V++Y  +   + NC G GQC  C
Sbjct:   60 LSLVKPLGMILEEVEEGAAKGVFVKEVAEEGSSVPYADEIVGLKLITVAGEDVTSLTFDEVMDKIINSPETVDLRLVSMNEIDSVDAEEDSA---PAFEIGTSVTIKLLQEGKDDLDIETKVGDNLRQVLLDNSVEVYQGMKQKLGNCGGGGQCTFC 213          
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Match: A0A7S2W1W1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W1W1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.640e-11
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    1 MSTESIIIELPKPFGILLEEVSGG---GVRVEGLIDGGNAKKSGKITP--GMRLLTIAGRDYSTSTFDEVMATLVKEEAPVSLTFTA--SAKPLARALEEEARREPPVAGRTTAVLTVIAPGGGSPKDIKAVVGANLRRVLLDNKVQLY-DFVGTVSNCNGAGQCGSC 480
            +S + + +EL KP G+LLEE       GV+VE L++ G+A  S       G+++  + G +     FD+VM  ++   +PV++ F    ++  L  + + E    P      T  + VI  G  + KDI A VG NLR+ LL+NKV++Y      + NC G+G C  C
Sbjct:   48 VSNKFLSLELEKPLGMLLEENEENEAKGVKVEELVETGSAYASEYKDQLVGLKIAKVNGENVLNIGFDDVMERIIDSPSPVAIDFELELASSDLEASGDSEDPSVPVYDIGQTVTIRVIQEGSET-KDIAAKVGNNLRKTLLENKVEVYRGLKKKLGNCGGSGTCAFC 214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12463.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDD4_ECTSI7.040e-2645.22PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CP36_9STRA6.420e-2239.242Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S4BLD9_CHRCT8.640e-2038.69Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S3YA98_HETAK4.340e-1935.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FMP7_9STRA1.120e-1740.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XJK9_9STRA2.460e-1635.84Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2BPU3_9STRA3.510e-1539.35Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J5XJU3_DIALT1.060e-1435.39Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
B5Y5K8_PHATC1.290e-1334.39Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2W1W1_9STRA1.640e-1132.74Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12463contigP-wetherbeei_contig12463:10..845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LDD4
Model size480
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.16e-26
EggNOG OGs2DJ3Z@1|root,2S5ZV@2759|Eukaryota
DescriptionDomain present in PSD-95, Dlg, and ZO-1/2.
Cds size480
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.614119-CDS-P-wetherbeei_contig12463:9..751683185949.614119-CDS-P-wetherbeei_contig12463:9..75Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12463 10..75 -
1683185949.62221-CDS-P-wetherbeei_contig12463:431..8451683185949.62221-CDS-P-wetherbeei_contig12463:431..845Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12463 432..845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12463.1.1prot_P-wetherbeei_contig12463.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12463 10..845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12463.1.1

>prot_P-wetherbeei_contig12463.1.1 ID=prot_P-wetherbeei_contig12463.1.1|Name=mRNA_P-wetherbeei_contig12463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MSTESIIIELPKPFGILLEEVSGGGVRVEGLIDGGNAKKSGKITPGMRLL
TIAGRDYSTSTFDEVMATLVKEEAPVSLTFTASAKPLARALEEEARREPP
VAGRTTAVLTVIAPGGGSPKDIKAVVGANLRRVLLDNKVQLYDFVGTVSN
CNGAGQCGSC
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mRNA from alignment at P-wetherbeei_contig12463:10..845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12463.1.1 ID=mRNA_P-wetherbeei_contig12463.1.1|Name=mRNA_P-wetherbeei_contig12463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=836bp|location=Sequence derived from alignment at P-wetherbeei_contig12463:10..845- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACTGAAAGCATCATCATCGAGCTGCCAAAGCCGTTTGGCATTTT GTTGGAGGAGGTTTCGGGAGGCGGAGTCAGAGTGGAGGGATTAATAGACG GCGGAAATGCAAAGAAGTCGGGCAAGATAACACCTGGCATGCGCCTCTTG ACCATTGCGGGGCGTGACTACTCTACGTCGACGTTCGATGAGGTAATGGC GACGCTTGTCAAGGAGGAGGCGCCGGTTTCTCTAACGTTCACGGCGTCTG CTAAACCACTGGCGCGCGCACTGGAAGAAGAGGCGCGTCGGGAGCCGCCT GTCGCCGGGCGCACAACTGCTGTTTTGACCGTCATTGCGCCTGGCGGCGG GTCTCCAAAGGATATCAAGGCGGTCGTCGGCGCAAACCTGCGCCGCGTAT TGCTGGACAACAAGGTGAGGCAATGAGGGAAGAAATAATGTTGACACGAC GCAACTATGGCCATCTTACGCATGTTTTTTTCGTTTTATGATTGATCGCC TGATCAGATGGTCCAGTGTTGATTATATTTTCTGGAGCCGTTTTGTCGCA AACCCGATCTAGACTACCCTCAGGCTCCTTTTTTCGCTGTCCGGAATACA GTACGCCTCGAACCGCTGGAAGACCATTTGTCCCTTCCGTGGTCAGGATC CATCTCTAATGCTAGCTGTGTGACTTGCCAGCCATCCCCTTCAACCCAAT GTGGTTGTGTGGACGGATAGACTTCTAACCTGTCCATCGCCCTCATGCCG TCTCAAAAATCCTTATTAAGGTCCAACTTTACGACTTCGTAGGCACGGTG TCTAACTGCAACGGCGCCGGCCAGTGTGGCAGCTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12463:10..845-

>mRNA_P-wetherbeei_contig12463.1.1 ID=mRNA_P-wetherbeei_contig12463.1.1|Name=mRNA_P-wetherbeei_contig12463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig12463:10..845- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACTGAAAGCATCATCATCGAGCTGCCAAAGCCGTTTGGCATTTT
GTTGGAGGAGGTTTCGGGAGGCGGAGTCAGAGTGGAGGGATTAATAGACG
GCGGAAATGCAAAGAAGTCGGGCAAGATAACACCTGGCATGCGCCTCTTG
ACCATTGCGGGGCGTGACTACTCTACGTCGACGTTCGATGAGGTAATGGC
GACGCTTGTCAAGGAGGAGGCGCCGGTTTCTCTAACGTTCACGGCGTCTG
CTAAACCACTGGCGCGCGCACTGGAAGAAGAGGCGCGTCGGGAGCCGCCT
GTCGCCGGGCGCACAACTGCTGTTTTGACCGTCATTGCGCCTGGCGGCGG
GTCTCCAAAGGATATCAAGGCGGTCGTCGGCGCAAACCTGCGCCGCGTAT
TGCTGGACAACAAGGTCCAACTTTACGACTTCGTAGGCACGGTGTCTAAC
TGCAACGGCGCCGGCCAGTGTGGCAGCTGT
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