mRNA_P-wetherbeei_contig12384.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12384.1.1
Unique NamemRNA_P-wetherbeei_contig12384.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Match: A0A836CM67_9STRA (Tctex-1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM67_9STRA)

HSP 1 Score: 181 bits (458), Expect = 7.300e-57
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQELNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQVSWPTEKMREQQGSRMKCIITAFGLSL 345
            SEQ AF+PEQVE +LM A++ VLKNEVY E+K   WVDSICD+ M  L  LNKPFKY+V+ A++QK GAG HA HSA+WDI  DN+CQVSWPT+KMREQQGSR+KCI+TAFGLSL
Sbjct:    6 SEQTAFLPEQVEGILMAAIDAVLKNEVYVEAKAQHWVDSICDKCMAGLHSLNKPFKYIVTAAVIQKNGAGVHAGHSAFWDIGSDNLCQVSWPTDKMREQQGSRIKCIVTAFGLSL 120          
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Match: D8LG53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG53_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 5.640e-42
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQELNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQV 267
            SEQLAFIPEQVES+LM  V+G+L+ EVY E KVS WV++ICDRSM +L +L+KPFKYVVSC IVQK GAGFH  HSAYWDIS DN+CQV
Sbjct:    6 SEQLAFIPEQVESILMTVVDGILRTEVYLEEKVSHWVNTICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNICQV 94          
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Match: A0A7S2XX11_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX11_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.350e-41
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQELNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQVSWPTEKMREQQGSRMKCIITAFG 336
            SE+LAFIPEQVE LL +A++ VLK EVYD+SKV QW+D+IC+  + +L  L KPFKYVV+C I+QK GAG +   +A+WD+  DNM    WP    REQQ SRM C++TAFG
Sbjct:    7 SEELAFIPEQVEPLLYQAIDQVLKTEVYDQSKVPQWIDTICETCVAELTALKKPFKYVVNCLIMQKNGAGLNMGQAAHWDLGNDNMASAKWPP---REQQSSRMVCVVTAFG 115          
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Match: A0A8J2SFI7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFI7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.930e-38
Identity = 59/115 (51.30%), Postives = 81/115 (70.43%), Query Frame = 1
Query:    1 SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQELNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQVSWPTEKMREQQGSRMKCIITAFGLSL 345
            SE  AF PE+VE LL   V  VL NEVYDESKV+ WVD ICD+SM +L ++NKPFKYVV+C ++QK GAG H   S +WD++ DN  ++++P    ++    RM C++T FG+S+
Sbjct:    8 SEDTAFQPEEVEPLLNDVVAKVLANEVYDESKVATWVDRICDQSMQKLTQMNKPFKYVVTCILMQKNGAGVHTGQSCFWDVANDNCARIAYPLASKKQAYDPRMYCVVTCFGVSM 122          
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Match: A0A7S1XIN6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XIN6_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.430e-36
Identity = 57/115 (49.57%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQELNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQVSWPTEKMREQQGSRMKCIITAFGLSL 345
            SE+LAF PEQVES+L + +  V+   VYD++KV+QWVD I DR M  L EL KPFKY V+  I+Q+ GAG H++HS +WD++ DN+ Q +WP +K R+Q  +RM  ++T F  ++
Sbjct:    7 SEELAFTPEQVESMLYQVITQVIGQSVYDDAKVAQWVDEINDRCMEMLVELTKPFKYTVTTFIMQRKGAGLHSSHSCFWDMATDNIAQANWPNDKHRDQHNNRMYVVVTVFAAAM 121          
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Match: A0A2R5G4I6_9STRA (Dynein light chain Tctex-type n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4I6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.810e-33
Identity = 53/113 (46.90%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQELNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQVSWPTEKMREQQGSRMKCIITAFGL 339
            +E+ AFI E+VE ++  ++E  LK++ +DE+KV++W+DSIC+  M  L +L KPFKYV++CAI+QK GAG H A+S+YWD   D    V WP +K +EQ  + + CI++ +GL
Sbjct:    7 AEESAFIAEEVERIVESSIETHLKDQAHDETKVARWIDSICETCMQDLADLGKPFKYVITCAIMQKNGAGLHTANSSYWDTVSDGCVTVKWPGDKSKEQNKT-LYCIVSVYGL 118          
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Match: K3WSZ8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSZ8_GLOUD)

HSP 1 Score: 120 bits (301), Expect = 5.980e-33
Identity = 56/114 (49.12%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    1 SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQELNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQVSWPTEKMREQQGSRMKCIITAFGLS 342
            SE+LAF+ E+V+ +++ +++  LK+E+YDE KV+ WVD+ICD  + QL EL KP KY+VSC I+QK GAG HA+ S +WD   D    V WP++K ++   S M CI+T  GLS
Sbjct:    8 SEELAFVAEEVDRIIVVSIDACLKDEMYDERKVAHWVDAICDAILKQLSELRKPLKYIVSCMIMQKNGAGVHASVSCHWDTVTDGAHVVKWPSDKHKDHNRS-MYCIVTVGGLS 120          
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Match: D0MVI0_PHYIT (Dynein light chain-like protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MVI0_PHYIT)

HSP 1 Score: 119 bits (298), Expect = 1.710e-32
Identity = 59/114 (51.75%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    1 SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQELNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQVSWPTEKMREQQGSRMKCIITAFGLS 342
            SE+LAF+ E+V+ +++ ++E  LK+EVYDE KVSQWVD IC+  M  L EL KP KY+VSC I+QK GAG HA+ S +WD   D    V WP +K ++   S M CI T  GLS
Sbjct:    8 SEELAFVAEEVDRIILTSIESCLKDEVYDELKVSQWVDYICESIMKGLGELRKPLKYIVSCLIMQKNGAGVHASVSCHWDTVTDGAHVVKWPGDKHKDHNRS-MYCITTVSGLS 120          
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Match: A0A6A4AER1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4AER1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.860e-31
Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQELNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQVSWPTEKMREQQGSRMKCIITAFGLS 342
            SE+LAF+ E+V+ +++ ++E  LK+EVYDE KVSQWVD IC+  M  L EL KP KY+VSC I+QK GAG HA+ S +WD   D    V WP +K ++   S M C+IT  GLS
Sbjct:  214 SEELAFVAEEVDRIILTSIESCLKDEVYDEQKVSQWVDYICESIMKGLSELRKPLKYIVSCLIMQKNGAGVHASVSCHWDTVTDGAHVVKWPGDKHKDHNRS-MYCVITVSGLS 326          
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Match: T0QB04_SAPDV (Uncharacterized protein n=6 Tax=Saprolegniaceae TaxID=4764 RepID=T0QB04_SAPDV)

HSP 1 Score: 116 bits (290), Expect = 2.810e-31
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQELNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQVSWPTEKMREQQGSRMKCIITAFGL 339
            SE+LAF+ E+V+ +++++VE  LK+  Y+E++VS WVDSICD  M  L EL KP KY+VSC I+QK GAG H+A S +WD + D    V WP++K +E   + M CI+T  GL
Sbjct:    8 SEELAFVAEEVDRIILQSVEHFLKDRSYEETEVSHWVDSICDGIMKGLCELRKPLKYIVSCVIMQKNGAGVHSAVSCHWDTAIDGAHVVKWPSDKHKEHNRT-MYCIVTVGGL 119          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12384.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM67_9STRA7.300e-5770.43Tctex-1 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
D8LG53_ECTSI5.640e-4274.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XX11_9STRA3.350e-4158.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2SFI7_9STRA5.930e-3851.30Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1XIN6_9STRA1.430e-3649.57Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A2R5G4I6_9STRA5.810e-3346.90Dynein light chain Tctex-type n=1 Tax=Hondaea ferm... [more]
K3WSZ8_GLOUD5.980e-3349.12Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0MVI0_PHYIT1.710e-3251.75Dynein light chain-like protein n=11 Tax=Phytophth... [more]
A0A6A4AER1_9STRA1.860e-3151.75Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
T0QB04_SAPDV2.810e-3149.56Uncharacterized protein n=6 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12384contigP-wetherbeei_contig12384:1239..1586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LG53
PFAMsTctex-1
Model size348
Max annot lvl2759|Eukaryota
KEGG koko:K05039,ko:K10420
KEGG TC2.A.22.3
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.25e-43
EggNOG OGsKOG4081@1|root,KOG4081@2759|Eukaryota
Ec32 ortholog descriptionTctex-1
Ec32 orthologEc-11_001910.1
Descriptionintracellular transport of viral protein in host cell
Cds size348
COG categoryS
BRITEko00000,ko02000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.2904208-CDS-P-wetherbeei_contig12384:1238..15861683185947.2904208-CDS-P-wetherbeei_contig12384:1238..1586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12384 1239..1586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12384.1.1prot_P-wetherbeei_contig12384.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12384 1239..1586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12384.1.1

>prot_P-wetherbeei_contig12384.1.1 ID=prot_P-wetherbeei_contig12384.1.1|Name=mRNA_P-wetherbeei_contig12384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
SEQLAFIPEQVESLLMRAVEGVLKNEVYDESKVSQWVDSICDRSMLQLQE
LNKPFKYVVSCAIVQKCGAGFHAAHSAYWDISGDNMCQVSWPTEKMREQQ
GSRMKCIITAFGLSL*
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mRNA from alignment at P-wetherbeei_contig12384:1239..1586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12384.1.1 ID=mRNA_P-wetherbeei_contig12384.1.1|Name=mRNA_P-wetherbeei_contig12384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig12384:1239..1586- (Phaeothamnion wetherbeei SAG_119_79)
AGCGAGCAGCTCGCCTTCATCCCGGAGCAGGTGGAGAGCCTCCTGATGCG AGCCGTCGAGGGCGTGCTCAAGAACGAGGTGTACGACGAGAGCAAGGTTT CGCAGTGGGTGGACAGCATCTGTGACAGGTCCATGCTGCAGCTGCAGGAG CTCAACAAGCCGTTCAAGTACGTTGTCAGCTGCGCTATCGTCCAAAAATG CGGCGCCGGGTTCCACGCGGCGCACAGCGCCTACTGGGATATCAGCGGCG ACAACATGTGCCAGGTCAGCTGGCCGACGGAGAAGATGCGCGAGCAGCAG GGCAGCCGGATGAAGTGCATCATAACAGCTTTCGGGCTGTCATTATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12384:1239..1586-

>mRNA_P-wetherbeei_contig12384.1.1 ID=mRNA_P-wetherbeei_contig12384.1.1|Name=mRNA_P-wetherbeei_contig12384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig12384:1239..1586- (Phaeothamnion wetherbeei SAG_119_79)
AGCGAGCAGCTCGCCTTCATCCCGGAGCAGGTGGAGAGCCTCCTGATGCG
AGCCGTCGAGGGCGTGCTCAAGAACGAGGTGTACGACGAGAGCAAGGTTT
CGCAGTGGGTGGACAGCATCTGTGACAGGTCCATGCTGCAGCTGCAGGAG
CTCAACAAGCCGTTCAAGTACGTTGTCAGCTGCGCTATCGTCCAAAAATG
CGGCGCCGGGTTCCACGCGGCGCACAGCGCCTACTGGGATATCAGCGGCG
ACAACATGTGCCAGGTCAGCTGGCCGACGGAGAAGATGCGCGAGCAGCAG
GGCAGCCGGATGAAGTGCATCATAACAGCTTTCGGGCTGTCATTATAG
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