mRNA_P-wetherbeei_contig12289.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12289.1.1
Unique NamemRNA_P-wetherbeei_contig12289.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A1U7XLC9_NICSY (uncharacterized protein LOC104235647 n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7XLC9_NICSY)

HSP 1 Score: 168 bits (425), Expect = 1.330e-43
Identity = 103/273 (37.73%), Postives = 152/273 (55.68%), Query Frame = 1
Query:    1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSASISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGP-LKLIDYSDSDWAGNTGTRRSPMGYV 816
            L++T+YM  P G+     K    V +L KS+YGLKQS   W +  DA+  +  F+ S  D C+Y +  S   +++++ LYVDD+LI A  +T+I+A K  +S  F MKDLG  K +LGMEI+  D    +SQK+YIE VL+  +M  C   +   AP  + L+ +  P    E   M +I Y  AVG ++Y  + TR D +  V  +SR+MSNP   H  AV+W ++ + G     L    F   G  + ++ Y DSD+AG+   RRS  GY+
Sbjct:  274 LEDTIYMDQPEGFLAEGKKD--HVCQLKKSLYGLKQSPRQWYKRFDAFMTTHEFSRSAFDSCVYHKKMSGNSMIYLL-LYVDDMLIAANNITEINALKKLLSKEFDMKDLGAAKKILGMEISREDDVVHLSQKRYIERVLERFNMQTCKPVSTPLAPHFK-LSESQMPQSEDEVEHMSKIPYASAVGSIMYAMVCTRPDIAQSVSVVSRYMSNPGKRHWEAVKWILRYLKGASGVGL---TFRKSGTGISILGYVDSDYAGDLDRRRSTTGYI 539          
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.180e-42
Identity = 102/274 (37.23%), Postives = 144/274 (52.55%), Query Frame = 1
Query:    1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITF--GDRSASISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816
            L+E VY+  P G+ +    G   V +L KS+YGLKQSG NW++ ID WF+   F PS ADPCLY +  S G+++ +V LYVDDL+IT+ +   +  FK +IS  F MKDL  L  +LGM I    G R   ISQ  YI+ +L    M  C        P   P+    + +  K+     E  Y   VG LLY  +VTR D +  V+ L +H+   +  H  A +  ++ + GT+   L        G   L+ Y+D+D+AG+   RRS  GY 
Sbjct:   95 LEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIV-LYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCK-------PVLTPMEGTLTKMDGKDVKPDNE--YMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTG-NSTGSFTLVGYADADYAGDKDNRRSTSGYA 357          
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A5E4FQD2_PRUDU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=5 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FQD2_PRUDU)

HSP 1 Score: 155 bits (392), Expect = 5.460e-42
Identity = 102/275 (37.09%), Postives = 145/275 (52.73%), Query Frame = 1
Query:    1 LDETVYMSPPTGWARPAVKGIRQ-VLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSASIS--QKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816
            L+E +YMS P G+    V G    V KL KS+YGLKQS   W +  D +   Q +T S  D C+Y R   DG  ++++ LYVDD+LI   +  +I+  K  +S  F MKDLG  + +LGMEI        IS  QK++++ VL+   M+  +     P      L+ + SP   +ES  M +I Y  AVG L+Y  + TR D S  V  +SR+M NP   H  AV+W ++ + GT    L        G   ++ Y DSD+AG+   RRS  G+V
Sbjct:   19 LEEEIYMSQPEGFK---VAGKENWVCKLQKSLYGLKQSPRQWYKRFDRFMIGQKYTRSHYDHCVYFRKLQDGTFIYLL-LYVDDMLIACKSKVEIERLKTQLSNEFEMKDLGEARKILGMEIERDRAKGKISLCQKQFLKKVLQRFGMNENSKPVSTPLAPHFKLSASMSPKTGEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQHDKVTGQC-VVGYVDSDYAGDLDKRRSTTGFV 288          
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.460e-41
Identity = 101/274 (36.86%), Postives = 147/274 (53.65%), Query Frame = 1
Query:    1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFG--DRSASISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816
            L+E VY+  P G+ +  + G   V +L KS+YGLKQSG NW++ ID WF+   F PS ADPCLY +  S G+++ +V LYVDDL+IT+ +   +D FK +IS  F MKDL  L  +LGM I      R   ISQ  YI+ VL    M  C        P   P+    + +  K+  A  + +Y   VG LLY  +VTR D +  V+ L +H+   +  H  A +  ++ + GT+   +        G   L+ ++D+D+AG+   RRS  GY 
Sbjct:  324 LEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLVIV-LYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCR-------PVLTPMEGTLTKMDGKD--AKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTG-NTTGSFTLVGFADADYAGDKDNRRSTSGYA 586          
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A1R3HSN7_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HSN7_COCAP)

HSP 1 Score: 160 bits (405), Expect = 6.820e-41
Identity = 108/275 (39.27%), Postives = 148/275 (53.82%), Query Frame = 1
Query:    1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSAS---ISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816
            L+E +YMS P G+     +    V  L K +YGLKQS   W +  D++  S  F  +  D C+Y +  SDG  ++++ LYVDD+LI A  L +I++ KA +S  F MKDLG  K +LGMEI + DR      +SQ+KYIE VL+   M      +  P  A   L  +  P    E   M  I Y  AVG L+Y  + TR D ++ V  +SR MSNP  TH  AV+W M+ + GTK   L    +  +G   LI Y DSD+AG+   RRS   Y+
Sbjct:  815 LEEQIYMSQPEGFIDSENED--HVCLLQKFLYGLKQSPRQWYKRFDSFMVSHDFARNQYDNCVYSKKLSDGSYIYLL-LYVDDMLIAAKDLAEINSLKALLSSEFEMKDLGAAKKILGMEI-WRDRKVGLLYVSQQKYIEKVLQSFQMDKAKPVST-PLAAHFKLDASALPSSNDEVNCMSIIPYSSAVGSLMYAMVCTRPDLAHAVSVISRFMSNPGKTHWEAVKWIMRYLNGTKNVCL---VYGSDGNSGLIGYVDSDYAGDFIKRRSLACYI 1081          
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A8J5YVE7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YVE7_9ROSI)

HSP 1 Score: 159 bits (403), Expect = 8.290e-41
Identity = 97/274 (35.40%), Postives = 150/274 (54.74%), Query Frame = 1
Query:    1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSASI--SQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816
            L+E +YM+ P G+      GI  V KLNKS+YGLKQS   W +  D++ + Q +T S  D C+Y +   D   ++++ LYVDD+LI + +  +ID  KA ++  F MKDLG +K +LGMEI+   +   +  +QK+Y++ VL+   ++  T     P  +   L    SP   +E   M ++ Y +AVG L+Y  + TR D S  V  +SR+M +P   H  AV+W ++ +  T    L        G   ++ Y DSD+AG+   RRS  GY+
Sbjct:  390 LEEEIYMTQPEGYEDAG--GINWVCKLNKSLYGLKQSPRQWYKRFDSFMRRQKYTRSKYDNCVYLQKLHDRSFIYLL-LYVDDMLIASKSQKEIDKLKAQLNEEFEMKDLGEVKKILGMEISRDRQKGKLCLNQKQYLKKVLQCFGVNENTKHVSTPLASHLKLNAQLSPKTEEEREYMAKVPYANAVGSLMYAMVCTRPDISQAVGVVSRYMHDPGKGHWQAVKWILRYLLKTVDVGLVFEQDEALGQF-VVGYVDSDFAGDLDKRRSTTGYL 659          
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A6A2XHJ4_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XHJ4_HIBSY)

HSP 1 Score: 159 bits (403), Expect = 1.280e-40
Identity = 98/275 (35.64%), Postives = 154/275 (56.00%), Query Frame = 1
Query:    1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSA---SISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816
            L+E +YM+ P G+     +  + V KLNK +YGLKQS   W +  D++ + Q +T S  D C+Y ++  DG  +F++ LYVDD+LI + +  +ID  KA ++  F MKDLG  K +LGMEI+  DR      ++QK+Y+  VL+   M+  T    +P  +   L+   SP   +E + M ++ Y +AVG L+Y  + TR D S  V  +S +M +P   H  AV+W ++ +  T    L    +   G   ++ Y+DSD+AG+   RRS  GY+
Sbjct:  941 LEEEIYMTHPEGYKDGGCE--KWVYKLNKLLYGLKQSPRQWYKRFDSFMRRQKYTRSKYDHCVYLQNLKDGSFIFLL-LYVDDMLIASKSQKEIDKLKAQLNQEFEMKDLGEAKKILGMEIS-RDRQRWKLFLTQKQYLRKVLQCFGMNENTKHVSIPLASHLKLSFQLSPKTNEERVYMAKVPYANAVGSLMYAMVCTRPDISQAVGVVSMYMHDPGEGHWQAVKWIIRYLQQTVDVGLVFKQYEELGQC-VVGYTDSDYAGDLDKRRSTTGYL 1210          
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A4Y1REK0_PRUDU (Transposable element protein n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REK0_PRUDU)

HSP 1 Score: 157 bits (396), Expect = 2.560e-40
Identity = 103/275 (37.45%), Postives = 145/275 (52.73%), Query Frame = 1
Query:    1 LDETVYMSPPTGWARPAVKGIRQ-VLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSASIS--QKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816
            L+E +YMS P G+    V G    V KL KS+YGLKQS   W +  D +   Q +T S  D C+Y R   DG  ++++ LYVDD+LI   +  +I+  K  +S  F MKDLG  + +LGMEI        IS  QK+Y++ VL+   M+  +     P      L+ + SP   +ES  M +I Y  AVG L+Y  + TR D S  V  +SR+M NP   H  AV+W ++ + GT    L        G   ++ Y DSD+AG+   RRS  G+V
Sbjct:  222 LEEEIYMSQPEGFK---VAGKENWVCKLQKSLYGLKQSPRQWYKRFDRFMIGQKYTRSHYDHCVYFRKLQDGTFIYLL-LYVDDMLIACKSKVEIERLKTQLSNEFEMKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFGMNENSKPVSTPLAPHFKLSASMSPKTGEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQHDKVTGQC-VVGYVDSDYAGDLDKRRSTTGFV 491          
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A6P8TCS2_GYMAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8TCS2_GYMAC)

HSP 1 Score: 150 bits (379), Expect = 3.030e-40
Identity = 97/266 (36.47%), Postives = 139/266 (52.26%), Query Frame = 1
Query:   19 MSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSASISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIK-YHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGY 813
            M  P G+ +   +G + V KL KSIYGLKQSG NWN  +       +FT + AD C+Y + S +GKV+  + + VDDL+I A     ++  K  +S  F MKDLG L   LGM+ +  D    +SQK+Y+E +L+  DM  C        P  Q L         +++  M ++K Y  AVG L+Y T  TR D   VV +LS++ + P+  H   V+  ++ + GT  K+L          L L  YSD+DWA +   RRS  GY
Sbjct:    1 MEQPEGYVK---EGEKLVCKLEKSIYGLKQSGRNWNTMLHECLTDDNFTQNPADHCVYSKESKEGKVI--IAIRVDDLIIAASNTKILEKVKNMLSTKFKMKDLGRLNHFLGMDFSQSDGCVKVSQKRYVEKILERFDMQECRVRD---TPCDQKLD--------EDAPKMVDVKKYREAVGSLIYLTTCTRPDLCFVVSKLSQYFAEPTDEHWVTVKHVLRYLRGTADKQLCFRK--SSEKLGLQAYSDADWAADKTDRRSMTGY 248          
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A5B7BYT4_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BYT4_DAVIN)

HSP 1 Score: 154 bits (390), Expect = 4.290e-40
Identity = 103/276 (37.32%), Postives = 145/276 (52.54%), Query Frame = 1
Query:    1 LDETVYMSPPTGWARPAVKGIRQ-VLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDR---SASISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816
            LDE +YM+ P G+    V G      KLNKS+YGLKQS   W +  D +   Q +  S  D  +Y R   DG  ++++ LYVDD+LI + +  +ID  K  ++  F MKDLG  K +LGMEI   DR   +  ++Q +Y++ VL+   M         P  A   L+   SP   +E   M +I Y +AVG L+Y  + TR D S+ V  +SR+M NP   H  AV+W ++ + GT    L        G   +I Y DSD+AG+   RRS  GYV
Sbjct:  104 LDEEIYMAQPDGFK---VTGKENWTCKLNKSLYGLKQSPRQWYKRFDRFMLDQKYIRSQFDHYVYFRKLRDGSFIYLL-LYVDDMLIASKSKVEIDRLKVQLNSEFDMKDLGEAKKILGMEIK-RDRVKGTVFLTQTQYLKNVLQRFGMDGTAKSVNTPLAAHFKLSALMSPRTEEERKHMTQIPYANAVGALMYAMVCTRPDISHAVSMVSRYMHNPGKGHWQAVKWILRYIQGTVDVGLKFQKDDSTGQ-HVIGYVDSDYAGDLDKRRSTTGYV 373          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1U7XLC9_NICSY1.330e-4337.73uncharacterized protein LOC104235647 n=1 Tax=Nicot... [more]
W7TCB8_9STRA5.180e-4237.23Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A5E4FQD2_PRUDU5.460e-4237.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TIM1_9STRA3.460e-4136.86Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A1R3HSN7_COCAP6.820e-4139.27Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A8J5YVE7_9ROSI8.290e-4135.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2XHJ4_HIBSY1.280e-4035.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1REK0_PRUDU2.560e-4037.45Transposable element protein n=2 Tax=Prunus dulcis... [more]
A0A6P8TCS2_GYMAC3.030e-4036.47uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A5B7BYT4_DAVIN4.290e-4037.32Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12289contigP-wetherbeei_contig12289:17..832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4081.Solyc04g011970.1.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve,zf-CCHC
Model size816
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.02e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,44UC5@71274|asterids
DescriptionMitochondrial protein
Cds size384
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185944.1443787-UTR-P-wetherbeei_contig12289:16..4481683185944.1443787-UTR-P-wetherbeei_contig12289:16..448Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12289 17..448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185944.15239-CDS-P-wetherbeei_contig12289:448..8321683185944.15239-CDS-P-wetherbeei_contig12289:448..832Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12289 449..832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12289.1.1prot_P-wetherbeei_contig12289.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12289 449..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12289.1.1

>prot_P-wetherbeei_contig12289.1.1 ID=prot_P-wetherbeei_contig12289.1.1|Name=mRNA_P-wetherbeei_contig12289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTM
VTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPC
EGPLKLIDYSDSDWAGNTGTRRSPMGYV
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mRNA from alignment at P-wetherbeei_contig12289:17..832+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12289.1.1 ID=mRNA_P-wetherbeei_contig12289.1.1|Name=mRNA_P-wetherbeei_contig12289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig12289:17..832+ (Phaeothamnion wetherbeei SAG_119_79)
CTAGACGAAACTGTCTATATGTCGCCACCGACAGGCTGGGCCCGTCCAGC CGTCAAAGGCATCCGCCAAGTCCTAAAGCTAAACAAAAGCATATATGGCC TCAAACAAAGTGGCAACAACTGGAACAGGCATATCGACGCCTGGTTCAAA TCCCAAAGCTTCACACCAAGTGATGCTGACCCGTGCCTGTACCGCCGACA CTCCTCCGATGGAAAAGTCGTCTTTGTAGTCTGCCTCTATGTCGATGACC TTCTCATAACCGCGCCCACACTCACGGACATCGATGCCTTCAAAGCAAGC ATCAGCGTCGCTTTCCTCATGAAAGATTTAGGTATCTTAAAATAGCTTCT AGGCATGGAAATCACCTTTGGTGATAGAAGTGCCTCCATCTCCCAAAAGA AATACATTGAAGGCGTGCTCAAAATATAAGATATGCATCACTGTACCCAC TTTACGGAGCTTCCGGCCCCAGCCGGCCAGCCGCTGACCATAGCCCCTTC CCCCCTACTACCCAAGGAATCCCTTGCCATGCGCGAAATCAAATACCACC ATGCTGTCGGTCATCTGCTGTACTTTACCATGGTGACCCGGTTCGACTTC TCAAACGTCGTCCGTGAACTTTCCAGACACATGTCTAATCCTAGTCTCAC CCACCGGGGCGCCGTCCGCTGGTGCATGAAGGTTGTCTGCGGCACCAAAG CCAAGAAATTACACCTTGTCGCCTTCCCCTGTGAAGGCCCACTAAAACTA ATTGACTACAGCGACTCCGACTGGGCTGGTAACACGGGCACCCGACGCTC TCCTATGGGCTACGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12289:17..832+

>mRNA_P-wetherbeei_contig12289.1.1 ID=mRNA_P-wetherbeei_contig12289.1.1|Name=mRNA_P-wetherbeei_contig12289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig12289:17..832+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCACTGTACCCACTTTACGGAGCTTCCGGCCCCAGCCGGCCAGCC
GCTGACCATAGCCCCTTCCCCCCTACTACCCAAGGAATCCCTTGCCATGC
GCGAAATCAAATACCACCATGCTGTCGGTCATCTGCTGTACTTTACCATG
GTGACCCGGTTCGACTTCTCAAACGTCGTCCGTGAACTTTCCAGACACAT
GTCTAATCCTAGTCTCACCCACCGGGGCGCCGTCCGCTGGTGCATGAAGG
TTGTCTGCGGCACCAAAGCCAAGAAATTACACCTTGTCGCCTTCCCCTGT
GAAGGCCCACTAAAACTAATTGACTACAGCGACTCCGACTGGGCTGGTAA
CACGGGCACCCGACGCTCTCCTATGGGCTACGTT
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