mRNA_P-wetherbeei_contig12289.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A1U7XLC9_NICSY (uncharacterized protein LOC104235647 n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7XLC9_NICSY) HSP 1 Score: 168 bits (425), Expect = 1.330e-43 Identity = 103/273 (37.73%), Postives = 152/273 (55.68%), Query Frame = 1 Query: 1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSASISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGP-LKLIDYSDSDWAGNTGTRRSPMGYV 816 L++T+YM P G+ K V +L KS+YGLKQS W + DA+ + F+ S D C+Y + S +++++ LYVDD+LI A +T+I+A K +S F MKDLG K +LGMEI+ D +SQK+YIE VL+ +M C + AP + L+ + P E M +I Y AVG ++Y + TR D + V +SR+MSNP H AV+W ++ + G L F G + ++ Y DSD+AG+ RRS GY+ Sbjct: 274 LEDTIYMDQPEGFLAEGKKD--HVCQLKKSLYGLKQSPRQWYKRFDAFMTTHEFSRSAFDSCVYHKKMSGNSMIYLL-LYVDDMLIAANNITEINALKKLLSKEFDMKDLGAAKKILGMEISREDDVVHLSQKRYIERVLERFNMQTCKPVSTPLAPHFK-LSESQMPQSEDEVEHMSKIPYASAVGSIMYAMVCTRPDIAQSVSVVSRYMSNPGKRHWEAVKWILRYLKGASGVGL---TFRKSGTGISILGYVDSDYAGDLDRRRSTTGYI 539
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 159 bits (401), Expect = 5.180e-42 Identity = 102/274 (37.23%), Postives = 144/274 (52.55%), Query Frame = 1 Query: 1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITF--GDRSASISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816 L+E VY+ P G+ + G V +L KS+YGLKQSG NW++ ID WF+ F PS ADPCLY + S G+++ +V LYVDDL+IT+ + + FK +IS F MKDL L +LGM I G R ISQ YI+ +L M C P P+ + + K+ E Y VG LLY +VTR D + V+ L +H+ + H A + ++ + GT+ L G L+ Y+D+D+AG+ RRS GY Sbjct: 95 LEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIV-LYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCK-------PVLTPMEGTLTKMDGKDVKPDNE--YMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTG-NSTGSFTLVGYADADYAGDKDNRRSTSGYA 357
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A5E4FQD2_PRUDU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=5 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FQD2_PRUDU) HSP 1 Score: 155 bits (392), Expect = 5.460e-42 Identity = 102/275 (37.09%), Postives = 145/275 (52.73%), Query Frame = 1 Query: 1 LDETVYMSPPTGWARPAVKGIRQ-VLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSASIS--QKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816 L+E +YMS P G+ V G V KL KS+YGLKQS W + D + Q +T S D C+Y R DG ++++ LYVDD+LI + +I+ K +S F MKDLG + +LGMEI IS QK++++ VL+ M+ + P L+ + SP +ES M +I Y AVG L+Y + TR D S V +SR+M NP H AV+W ++ + GT L G ++ Y DSD+AG+ RRS G+V Sbjct: 19 LEEEIYMSQPEGFK---VAGKENWVCKLQKSLYGLKQSPRQWYKRFDRFMIGQKYTRSHYDHCVYFRKLQDGTFIYLL-LYVDDMLIACKSKVEIERLKTQLSNEFEMKDLGEARKILGMEIERDRAKGKISLCQKQFLKKVLQRFGMNENSKPVSTPLAPHFKLSASMSPKTGEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQHDKVTGQC-VVGYVDSDYAGDLDKRRSTTGFV 288
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 161 bits (407), Expect = 3.460e-41 Identity = 101/274 (36.86%), Postives = 147/274 (53.65%), Query Frame = 1 Query: 1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFG--DRSASISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816 L+E VY+ P G+ + + G V +L KS+YGLKQSG NW++ ID WF+ F PS ADPCLY + S G+++ +V LYVDDL+IT+ + +D FK +IS F MKDL L +LGM I R ISQ YI+ VL M C P P+ + + K+ A + +Y VG LLY +VTR D + V+ L +H+ + H A + ++ + GT+ + G L+ ++D+D+AG+ RRS GY Sbjct: 324 LEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLVIV-LYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCR-------PVLTPMEGTLTKMDGKD--AKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTG-NTTGSFTLVGFADADYAGDKDNRRSTSGYA 586
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A1R3HSN7_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HSN7_COCAP) HSP 1 Score: 160 bits (405), Expect = 6.820e-41 Identity = 108/275 (39.27%), Postives = 148/275 (53.82%), Query Frame = 1 Query: 1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSAS---ISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816 L+E +YMS P G+ + V L K +YGLKQS W + D++ S F + D C+Y + SDG ++++ LYVDD+LI A L +I++ KA +S F MKDLG K +LGMEI + DR +SQ+KYIE VL+ M + P A L + P E M I Y AVG L+Y + TR D ++ V +SR MSNP TH AV+W M+ + GTK L + +G LI Y DSD+AG+ RRS Y+ Sbjct: 815 LEEQIYMSQPEGFIDSENED--HVCLLQKFLYGLKQSPRQWYKRFDSFMVSHDFARNQYDNCVYSKKLSDGSYIYLL-LYVDDMLIAAKDLAEINSLKALLSSEFEMKDLGAAKKILGMEI-WRDRKVGLLYVSQQKYIEKVLQSFQMDKAKPVST-PLAAHFKLDASALPSSNDEVNCMSIIPYSSAVGSLMYAMVCTRPDLAHAVSVISRFMSNPGKTHWEAVKWIMRYLNGTKNVCL---VYGSDGNSGLIGYVDSDYAGDFIKRRSLACYI 1081
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A8J5YVE7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YVE7_9ROSI) HSP 1 Score: 159 bits (403), Expect = 8.290e-41 Identity = 97/274 (35.40%), Postives = 150/274 (54.74%), Query Frame = 1 Query: 1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSASI--SQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816 L+E +YM+ P G+ GI V KLNKS+YGLKQS W + D++ + Q +T S D C+Y + D ++++ LYVDD+LI + + +ID KA ++ F MKDLG +K +LGMEI+ + + +QK+Y++ VL+ ++ T P + L SP +E M ++ Y +AVG L+Y + TR D S V +SR+M +P H AV+W ++ + T L G ++ Y DSD+AG+ RRS GY+ Sbjct: 390 LEEEIYMTQPEGYEDAG--GINWVCKLNKSLYGLKQSPRQWYKRFDSFMRRQKYTRSKYDNCVYLQKLHDRSFIYLL-LYVDDMLIASKSQKEIDKLKAQLNEEFEMKDLGEVKKILGMEISRDRQKGKLCLNQKQYLKKVLQCFGVNENTKHVSTPLASHLKLNAQLSPKTEEEREYMAKVPYANAVGSLMYAMVCTRPDISQAVGVVSRYMHDPGKGHWQAVKWILRYLLKTVDVGLVFEQDEALGQF-VVGYVDSDFAGDLDKRRSTTGYL 659
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A6A2XHJ4_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XHJ4_HIBSY) HSP 1 Score: 159 bits (403), Expect = 1.280e-40 Identity = 98/275 (35.64%), Postives = 154/275 (56.00%), Query Frame = 1 Query: 1 LDETVYMSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSA---SISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816 L+E +YM+ P G+ + + V KLNK +YGLKQS W + D++ + Q +T S D C+Y ++ DG +F++ LYVDD+LI + + +ID KA ++ F MKDLG K +LGMEI+ DR ++QK+Y+ VL+ M+ T +P + L+ SP +E + M ++ Y +AVG L+Y + TR D S V +S +M +P H AV+W ++ + T L + G ++ Y+DSD+AG+ RRS GY+ Sbjct: 941 LEEEIYMTHPEGYKDGGCE--KWVYKLNKLLYGLKQSPRQWYKRFDSFMRRQKYTRSKYDHCVYLQNLKDGSFIFLL-LYVDDMLIASKSQKEIDKLKAQLNQEFEMKDLGEAKKILGMEIS-RDRQRWKLFLTQKQYLRKVLQCFGMNENTKHVSIPLASHLKLSFQLSPKTNEERVYMAKVPYANAVGSLMYAMVCTRPDISQAVGVVSMYMHDPGEGHWQAVKWIIRYLQQTVDVGLVFKQYEELGQC-VVGYTDSDYAGDLDKRRSTTGYL 1210
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A4Y1REK0_PRUDU (Transposable element protein n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REK0_PRUDU) HSP 1 Score: 157 bits (396), Expect = 2.560e-40 Identity = 103/275 (37.45%), Postives = 145/275 (52.73%), Query Frame = 1 Query: 1 LDETVYMSPPTGWARPAVKGIRQ-VLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSASIS--QKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816 L+E +YMS P G+ V G V KL KS+YGLKQS W + D + Q +T S D C+Y R DG ++++ LYVDD+LI + +I+ K +S F MKDLG + +LGMEI IS QK+Y++ VL+ M+ + P L+ + SP +ES M +I Y AVG L+Y + TR D S V +SR+M NP H AV+W ++ + GT L G ++ Y DSD+AG+ RRS G+V Sbjct: 222 LEEEIYMSQPEGFK---VAGKENWVCKLQKSLYGLKQSPRQWYKRFDRFMIGQKYTRSHYDHCVYFRKLQDGTFIYLL-LYVDDMLIACKSKVEIERLKTQLSNEFEMKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFGMNENSKPVSTPLAPHFKLSASMSPKTGEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQHDKVTGQC-VVGYVDSDYAGDLDKRRSTTGFV 491
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A6P8TCS2_GYMAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8TCS2_GYMAC) HSP 1 Score: 150 bits (379), Expect = 3.030e-40 Identity = 97/266 (36.47%), Postives = 139/266 (52.26%), Query Frame = 1 Query: 19 MSPPTGWARPAVKGIRQVLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDRSASISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIK-YHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGY 813 M P G+ + +G + V KL KSIYGLKQSG NWN + +FT + AD C+Y + S +GKV+ + + VDDL+I A ++ K +S F MKDLG L LGM+ + D +SQK+Y+E +L+ DM C P Q L +++ M ++K Y AVG L+Y T TR D VV +LS++ + P+ H V+ ++ + GT K+L L L YSD+DWA + RRS GY Sbjct: 1 MEQPEGYVK---EGEKLVCKLEKSIYGLKQSGRNWNTMLHECLTDDNFTQNPADHCVYSKESKEGKVI--IAIRVDDLIIAASNTKILEKVKNMLSTKFKMKDLGRLNHFLGMDFSQSDGCVKVSQKRYVEKILERFDMQECRVRD---TPCDQKLD--------EDAPKMVDVKKYREAVGSLIYLTTCTRPDLCFVVSKLSQYFAEPTDEHWVTVKHVLRYLRGTADKQLCFRK--SSEKLGLQAYSDADWAADKTDRRSMTGY 248
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Match: A0A5B7BYT4_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BYT4_DAVIN) HSP 1 Score: 154 bits (390), Expect = 4.290e-40 Identity = 103/276 (37.32%), Postives = 145/276 (52.54%), Query Frame = 1 Query: 1 LDETVYMSPPTGWARPAVKGIRQ-VLKLNKSIYGLKQSGNNWNRHIDAWFKSQSFTPSDADPCLYRRHSSDGKVVFVVCLYVDDLLITAPTLTDIDAFKASISVAFLMKDLGILK*LLGMEITFGDR---SASISQKKYIEGVLKI*DMHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMVTRFDFSNVVRELSRHMSNPSLTHRGAVRWCMKVVCGTKAKKLHLVAFPCEGPLKLIDYSDSDWAGNTGTRRSPMGYV 816 LDE +YM+ P G+ V G KLNKS+YGLKQS W + D + Q + S D +Y R DG ++++ LYVDD+LI + + +ID K ++ F MKDLG K +LGMEI DR + ++Q +Y++ VL+ M P A L+ SP +E M +I Y +AVG L+Y + TR D S+ V +SR+M NP H AV+W ++ + GT L G +I Y DSD+AG+ RRS GYV Sbjct: 104 LDEEIYMAQPDGFK---VTGKENWTCKLNKSLYGLKQSPRQWYKRFDRFMLDQKYIRSQFDHYVYFRKLRDGSFIYLL-LYVDDMLIASKSKVEIDRLKVQLNSEFDMKDLGEAKKILGMEIK-RDRVKGTVFLTQTQYLKNVLQRFGMDGTAKSVNTPLAAHFKLSALMSPRTEEERKHMTQIPYANAVGALMYAMVCTRPDISHAVSMVSRYMHNPGKGHWQAVKWILRYIQGTVDVGLKFQKDDSTGQ-HVIGYVDSDYAGDLDKRRSTTGYV 373 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12289.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12289.1.1 >prot_P-wetherbeei_contig12289.1.1 ID=prot_P-wetherbeei_contig12289.1.1|Name=mRNA_P-wetherbeei_contig12289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp MHHCTHFTELPAPAGQPLTIAPSPLLPKESLAMREIKYHHAVGHLLYFTMback to top mRNA from alignment at P-wetherbeei_contig12289:17..832+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12289.1.1 ID=mRNA_P-wetherbeei_contig12289.1.1|Name=mRNA_P-wetherbeei_contig12289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig12289:17..832+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12289:17..832+ >mRNA_P-wetherbeei_contig12289.1.1 ID=mRNA_P-wetherbeei_contig12289.1.1|Name=mRNA_P-wetherbeei_contig12289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig12289:17..832+ (Phaeothamnion wetherbeei SAG_119_79)back to top |