mRNA_P-wetherbeei_contig1226.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1226.2.1
Unique NamemRNA_P-wetherbeei_contig1226.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1226.2.1 vs. uniprot
Match: D8LRV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRV6_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 7.150e-9
Identity = 27/54 (50.00%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:   38 ASFATMDADYLKRTVGDPLSEALARMVVAQPTDAVGYIGDYLLNYVAQRKMEIR 199
            A+ + MDA++LKRTVG+PLS+AL  +VVAQP D + +IG+ LL+++ +R+ E +
Sbjct:    7 AADSAMDAEFLKRTVGEPLSDALTALVVAQPADPIEFIGEALLDFIKRREAEAK 60
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BLAST of mRNA_P-wetherbeei_contig1226.2.1 vs. uniprot
Match: A0A1V9YYG1_9STRA (Flagella associated protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYG1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.040e-6
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:   56 DADYLKRTVGDPLSEALARMVVAQPTDAVGYIGDYLLNYVAQRK 187
            D  YLK TVG+PLSEALA++ + QP D + Y+G YLL YVA  K
Sbjct:   10 DFVYLKTTVGNPLSEALAQLALDQPEDPIEYVGKYLLKYVANEK 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1226.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRV6_ECTSI7.150e-950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9YYG1_9STRA1.040e-659.09Flagella associated protein n=1 Tax=Achlya hypogyn... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1226contigP-wetherbeei_contig1226:2770..3565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRV6
PFAMsDpy-30
Model size371
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.69e-09
EggNOG OGs2BXEW@1|root,2SAR6@2759|Eukaryota
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185943.1645405-UTR-P-wetherbeei_contig1226:2769..28061683185943.1645405-UTR-P-wetherbeei_contig1226:2769..2806Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1226 2770..2806 +
1683185943.1756282-UTR-P-wetherbeei_contig1226:2924..29391683185943.1756282-UTR-P-wetherbeei_contig1226:2924..2939Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1226 2925..2939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185943.183037-CDS-P-wetherbeei_contig1226:2939..30861683185943.183037-CDS-P-wetherbeei_contig1226:2939..3086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1226 2940..3086 +
1683185943.1899552-CDS-P-wetherbeei_contig1226:3228..33571683185943.1899552-CDS-P-wetherbeei_contig1226:3228..3357Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1226 3229..3357 +
1683185943.1969757-CDS-P-wetherbeei_contig1226:3523..35651683185943.1969757-CDS-P-wetherbeei_contig1226:3523..3565Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1226 3524..3565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1226.2.1prot_P-wetherbeei_contig1226.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1226 2940..3565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1226.2.1

>prot_P-wetherbeei_contig1226.2.1 ID=prot_P-wetherbeei_contig1226.2.1|Name=mRNA_P-wetherbeei_contig1226.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MDADYLKRTVGDPLSEALARMVVAQPTDAVGYIGDYLLNYVAQRKMEIRL
KARAMAAIAAAEAAQKAAEAAAAEEDARAQTAKADTEKEDREAESALKAG
TDIEQT
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mRNA from alignment at P-wetherbeei_contig1226:2770..3565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1226.2.1 ID=mRNA_P-wetherbeei_contig1226.2.1|Name=mRNA_P-wetherbeei_contig1226.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=796bp|location=Sequence derived from alignment at P-wetherbeei_contig1226:2770..3565+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGAGAGCCTGTCGTTGCAAGAGGTAAAATTTTGAGGTAAAGACCATTT
GGCGTTCATATTTTTTGTCCATCTCTCAGTTCAGCGTCTTCTCCACGCAA
TTCATTTCCCTCGAACCGAGATTTGATGCACATCGTAAACCCGCCTTTCG
CGCAGGCAAGCTTCGCAACGATGGACGCCGACTACTTGAAGCGAACCGTC
GGGGACCCCTTGTCCGAGGCCCTGGCCCGGATGGTCGTGGCGCAGCCGAC
CGACGCCGTGGGCTACATCGGCGACTACCTCCTCAACTACGTCGCGCAGC
GCAAAATGGAAATCCGGGTCAGTCGCTCTTTTACCTCCTGCCTTGCCATC
TTTCTTTCCGAAGAGCGTTTACAACAACCACAAACACGCACAAACACAGA
GGTTGGTCTAACACTTTCTCGGAGTCTTCTATCCTGACATTCTACTCCTT
CCGGTCCAGCTCAAGGCTCGTGCCATGGCCGCCATCGCGGCTGCCGAGGC
GGCGCAGAAGGCGGCGGAGGCCGCCGCGGCAGAGGAGGATGCACGTGCCC
AGACCGCCAAGGCCGACACAGAGAAAGAGGATCGTGAGGCGCGTCGTAAA
AAGAAAAAGATACGCATTGTTTTAACGAAGGCGAAACGCAGCTTCCCATG
CTCCCAGAATTTGCTGTGCTTAGTTGAAGTCGGCGCTGTTTCTGCTGACG
GCGCTTCTGGACCTCACTGCATCCACGGGTCTCTTTCCTGGTTTACTGAC
CCAGGCGGAGAGCGCACTGAAGGCGGGCACGGACATTGAGCAGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1226:2770..3565+

>mRNA_P-wetherbeei_contig1226.2.1 ID=mRNA_P-wetherbeei_contig1226.2.1|Name=mRNA_P-wetherbeei_contig1226.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig1226:2770..3565+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCCGACTACTTGAAGCGAACCGTCGGGGACCCCTTGTCCGAGGC
CCTGGCCCGGATGGTCGTGGCGCAGCCGACCGACGCCGTGGGCTACATCG
GCGACTACCTCCTCAACTACGTCGCGCAGCGCAAAATGGAAATCCGGCTC
AAGGCTCGTGCCATGGCCGCCATCGCGGCTGCCGAGGCGGCGCAGAAGGC
GGCGGAGGCCGCCGCGGCAGAGGAGGATGCACGTGCCCAGACCGCCAAGG
CCGACACAGAGAAAGAGGATCGTGAGGCGGAGAGCGCACTGAAGGCGGGC
ACGGACATTGAGCAGACG
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