mRNA_P-wetherbeei_contig12234.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12234.3.1
Unique NamemRNA_P-wetherbeei_contig12234.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12234.3.1 vs. uniprot
Match: A0A7X9AGD2_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AGD2_9BURK)

HSP 1 Score: 121 bits (304), Expect = 3.480e-34
Identity = 49/72 (68.06%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    7 LKQKALEPHLRHCQILDKEVSILIEYPDYKNPNYKGPEGAIYCENIINCYQNNIKCRYSGISPLYPDPFLPK 222
            L+QKALEP ++HC +L  +V++L+EYPDYK P++KGPEGAIYCENI+ CYQ + +CRYSGISPL+PDPFLP+
Sbjct:   23 LRQKALEPQVKHCYLLGIDVTVLVEYPDYKGPHHKGPEGAIYCENIVPCYQVDRRCRYSGISPLFPDPFLPR 94
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BLAST of mRNA_P-wetherbeei_contig12234.3.1 vs. uniprot
Match: A0A355TUT7_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TUT7_9BACT)

HSP 1 Score: 104 bits (260), Expect = 1.340e-27
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 PALKQKALEPHLRHCQILDKEVSILIEYPDYKNPNYKGPEGAIYCENIINCYQNNIKCRYSGISPLYPDPFLPK 222
            P  ++ A+EP  R+C IL+KE+++ I YPDY +   KGPEG IYCENII CY+  +KCR+SGIS LYPDPF+P+
Sbjct:   27 PMARRCAIEPARRYCYILNKEITVCINYPDYIDSRRKGPEGEIYCENIIECYRKGVKCRHSGISQLYPDPFVPQ 100
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BLAST of mRNA_P-wetherbeei_contig12234.3.1 vs. uniprot
Match: A0A7C5RIE0_9FIRM (Uncharacterized protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C5RIE0_9FIRM)

HSP 1 Score: 90.1 bits (222), Expect = 9.780e-22
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   10 KQKALEPHLRHCQILDKEVSILIEYPDYKNPNYKGPEGAIYCENIINCYQNNIKCRYSGISPLYPDPF 213
            KQKALEP    C+IL K+V+IL+EY DYK   +    G I+C N++ CYQN IKC+YSGIS  +PDPF
Sbjct:   17 KQKALEPKQLLCKILQKKVTILVEYLDYKGKYHPSEIGEIFCSNMLQCYQNKIKCKYSGISKFFPDPF 84
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BLAST of mRNA_P-wetherbeei_contig12234.3.1 vs. uniprot
Match: A0A7C6DS12_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C6DS12_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 4.180e-21
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   10 KQKALEPHLRHCQILDKEVSILIEYPDYKNPNYKGPEGAIYCENIINCYQNNIKCRYSGISPLYPDPF 213
            KQ+ALEP    C+IL K+V ++IE+ DYK   +   +G I+C N++ CYQNNIKC+YSGIS  +PDPF
Sbjct:   17 KQRALEPQELFCKILQKKVIVVIEHLDYKGVYHPSVKGEIFCSNMLECYQNNIKCKYSGISKFFPDPF 84
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BLAST of mRNA_P-wetherbeei_contig12234.3.1 vs. uniprot
Match: A0A7C2MUI4_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C2MUI4_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 3.240e-18
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:   10 KQKALEPHLRHCQILDKEVSILIEYPDYKNPNYKGPEGAIYCENIINCYQNNIKCRYSGISPLYPDP 210
            K KALEP    C+IL+K+++I+IE+ DYK    K   G I+C N++ CY  NIKC+YSGIS  YPDP
Sbjct:   18 KYKALEPKEVFCKILNKKITIVIEHIDYKGTYTKSDIGEIFCGNMLECYYENIKCKYSGISKFYPDP 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12234.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7X9AGD2_9BURK3.480e-3468.06Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A355TUT7_9BACT1.340e-2758.11Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
A0A7C5RIE0_9FIRM9.780e-2257.35Uncharacterized protein n=1 Tax=Firmicutes bacteri... [more]
A0A7C6DS12_9BACT4.180e-2154.41Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A7C2MUI4_9BACT3.240e-1853.73Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12234contigP-wetherbeei_contig12234:1120..1341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size222
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185942.7209496-CDS-P-wetherbeei_contig12234:1119..13411683185942.7209496-CDS-P-wetherbeei_contig12234:1119..1341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12234 1120..1341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12234.3.1prot_P-wetherbeei_contig12234.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12234 1120..1341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12234.3.1

>prot_P-wetherbeei_contig12234.3.1 ID=prot_P-wetherbeei_contig12234.3.1|Name=mRNA_P-wetherbeei_contig12234.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
PALKQKALEPHLRHCQILDKEVSILIEYPDYKNPNYKGPEGAIYCENIIN
CYQNNIKCRYSGISPLYPDPFLPK
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mRNA from alignment at P-wetherbeei_contig12234:1120..1341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12234.3.1 ID=mRNA_P-wetherbeei_contig12234.3.1|Name=mRNA_P-wetherbeei_contig12234.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig12234:1120..1341+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGCTCTCAAGCAAAAGGCTTTGGAGCCCCATCTTCGCCATTGCCAGAT
TCTCGACAAAGAAGTCAGTATTCTCATCGAGTACCCCGATTACAAAAACC
CCAACTACAAAGGCCCCGAAGGCGCGATTTACTGCGAGAACATCATCAAC
TGCTACCAGAACAACATCAAGTGCAGGTACAGCGGAATCTCGCCTCTCTA
TCCCGATCCGTTCCTCCCGAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12234:1120..1341+

>mRNA_P-wetherbeei_contig12234.3.1 ID=mRNA_P-wetherbeei_contig12234.3.1|Name=mRNA_P-wetherbeei_contig12234.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig12234:1120..1341+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGCTCTCAAGCAAAAGGCTTTGGAGCCCCATCTTCGCCATTGCCAGAT
TCTCGACAAAGAAGTCAGTATTCTCATCGAGTACCCCGATTACAAAAACC
CCAACTACAAAGGCCCCGAAGGCGCGATTTACTGCGAGAACATCATCAAC
TGCTACCAGAACAACATCAAGTGCAGGTACAGCGGAATCTCGCCTCTCTA
TCCCGATCCGTTCCTCCCGAAA
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