mRNA_P-wetherbeei_contig12234.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12234.1.1
Unique NamemRNA_P-wetherbeei_contig12234.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Match: A0A1W1I166_9BACT (FeS cluster assembly protein n=1 Tax=Nitrospira japonica TaxID=1325564 RepID=A0A1W1I166_9BACT)

HSP 1 Score: 131 bits (329), Expect = 2.240e-37
Identity = 59/106 (55.66%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 MVNLTEKAQQEVSRLIKENELSDSVLRMGVRGGGCSGLSYTLGFDKEVGEYDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSCGCGSSF 318
            ++ LTE A +EV RLI    L++  LR+GV+GGGCSGLSYT+ FD+++G+YD V+++D G++V +D KS +YL+GT++D+ +DL+GG FKF NPNA K+CGCG SF
Sbjct:   11 VITLTEAALKEVKRLINVQGLTEGGLRLGVKGGGCSGLSYTINFDEKIGQYDQVYDFD-GVKVIVDAKSAIYLQGTQLDYQKDLMGGSFKFVNPNANKTCGCGESF 115          
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Match: A0A1W9G482_9BACT ([Fe-S]-binding protein n=2 Tax=unclassified Nitrospira TaxID=2652172 RepID=A0A1W9G482_9BACT)

HSP 1 Score: 130 bits (328), Expect = 3.370e-37
Identity = 61/106 (57.55%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 MVNLTEKAQQEVSRLIKENELSDSVLRMGVRGGGCSGLSYTLGFDKEVGEYDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSCGCGSSF 318
            +V L+E A +EV RLI    +    LR+GV+GGGCSGLSYT+ FD+++G+YD VF +D G+RV ID KS +YL+GT++D+ +DL+GG FKF NPNA K+CGCG SF
Sbjct:   13 VVTLSESALKEVKRLINVQGIESGGLRLGVKGGGCSGLSYTINFDEKIGQYDQVFEFD-GVRVIIDAKSAIYLQGTQLDYQKDLMGGNFKFVNPNANKTCGCGESF 117          
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Match: A0A2E5X2H1_9BACT (Iron-sulfur cluster assembly accessory protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X2H1_9BACT)

HSP 1 Score: 130 bits (327), Expect = 3.440e-37
Identity = 66/107 (61.68%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 MVNLTEKAQQEVSRLIKENEL-SDSVLRMGVRGGGCSGLSYTLGFDKEVGEYDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSCGCGSSF 318
            M+ LTE+A QE+ R+IKE  + + + LR+GV+GGGCSG SYTLGFD  VGE D VF  +D +RV  D KS LYL GTE+DF  DL+G GFKF NPNA K+CGCG SF
Sbjct:    1 MITLTERAGQELERIIKEQGMPTGTALRVGVKGGGCSGFSYTLGFDDAVGELDQVFEVND-VRVVCDPKSFLYLNGTEIDFEDDLMGRGFKFVNPNASKTCGCGESF 106          
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Match: A0A7T5RKQ7_9BACT (Iron-sulfur cluster assembly accessory protein n=1 Tax=Candidatus Niyogibacteria bacterium TaxID=2750078 RepID=A0A7T5RKQ7_9BACT)

HSP 1 Score: 129 bits (323), Expect = 1.440e-36
Identity = 60/108 (55.56%), Postives = 81/108 (75.00%), Query Frame = 1
Query:    1 MVNLTEKAQQEVSRLIKENELSDSVLRMGVRGGGCSGLSYTLGFDKEVGEYDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSCGCGSSFQP 324
            M+ LTE A +E+ RL +E  L + VLR+GV+GGGCSGLSYTLGFD E+ + D VF  + GI+V +D KS+LY+ GT + + Q ++GGGF+F NPNA ++CGCG SF P
Sbjct:    1 MIKLTESAIKEIKRLKEEKNLQNHVLRIGVQGGGCSGLSYTLGFDTEIKDKDKVFEIE-GIKVVVDQKSLLYIDGTTLTYEQSMMGGGFRFENPNASRTCGCGESFSP 107          
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Match: A0A679HIS1_9BACT (FeS cluster assembly protein n=1 Tax=Nitrospira sp. KM1 TaxID=1936990 RepID=A0A679HIS1_9BACT)

HSP 1 Score: 128 bits (322), Expect = 2.680e-36
Identity = 58/106 (54.72%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 MVNLTEKAQQEVSRLIKENELSDSVLRMGVRGGGCSGLSYTLGFDKEVGEYDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSCGCGSSF 318
            ++ LT+ A +EV RLI    L++  LR+GV+GGGCSGLSYT+ FD+++G +D VF++D G++V +D+KS +YL+GT++D+ +DL+GG FKF NPNA K+CGCG SF
Sbjct:   12 VITLTDAALKEVKRLINVQGLTEGGLRLGVKGGGCSGLSYTINFDEKIGPHDQVFDFD-GVKVIVDVKSAIYLQGTQLDYHKDLMGGNFKFVNPNANKTCGCGESF 116          
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Match: D8P863_9BACT (Iron-sulfur cluster assembly protein IscA n=17 Tax=Nitrospirae TaxID=40117 RepID=D8P863_9BACT)

HSP 1 Score: 128 bits (321), Expect = 3.910e-36
Identity = 57/106 (53.77%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 MVNLTEKAQQEVSRLIKENELSDSVLRMGVRGGGCSGLSYTLGFDKEVGEYDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSCGCGSSF 318
            ++ L++ A +EV RLI    + +  LR+GV+GGGCSGLSYT+ FD+++G+YD V+ +D G++V +D KS +YL+GT++DF +DL+GG FKF NPNA K+CGCG SF
Sbjct:   13 VITLSDAALKEVKRLINVQGIEEGGLRLGVKGGGCSGLSYTINFDEKIGQYDQVYEFD-GVKVIVDAKSAIYLQGTQLDFQKDLMGGNFKFVNPNANKTCGCGESF 117          
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Match: A0A533Z944_9BACT (Iron-sulfur cluster assembly accessory protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A533Z944_9BACT)

HSP 1 Score: 127 bits (319), Expect = 7.210e-36
Identity = 63/106 (59.43%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    1 MVNLTEKAQQEVSRLIKENELSDSVLRMGVRGGGCSGLSYTLGFDKEVGEYDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSCGCGSSF 318
            +V LTE A +EV RL K   L  + LR+GV+GGGCSGLSYT+ FD E G YD V+   D IRV +DMKS +YL+GT++D+ +D+L G FKF+NPNA KSCGCG SF
Sbjct:   10 IVTLTENAVKEVKRLQKVQGLEGTALRLGVKGGGCSGLSYTVNFDTEAGPYDQVYEVGD-IRVIVDMKSTIYLQGTQLDYQKDMLSGQFKFSNPNATKSCGCGESF 114          
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Match: A0A7V8W470_9BACT (Iron-sulfur cluster assembly accessory protein n=1 Tax=Nitrospirales bacterium TaxID=2358460 RepID=A0A7V8W470_9BACT)

HSP 1 Score: 127 bits (319), Expect = 7.430e-36
Identity = 59/106 (55.66%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 MVNLTEKAQQEVSRLIKENELSDSVLRMGVRGGGCSGLSYTLGFDKEVGEYDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSCGCGSSF 318
            +V L+E A +EV RLI    +++  LR+GV+GGGCSGLSYT+ FD+++G+YD V+  + GI+V +D KS +YL+GT++DF +DL+GG FKF NPNA+K+CGCG SF
Sbjct:   11 VVTLSESAVKEVKRLINVQGMTEGGLRLGVKGGGCSGLSYTINFDEKIGQYDTVYEIE-GIKVIVDTKSAIYLQGTQLDFQKDLMGGAFKFVNPNAQKTCGCGESF 115          
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Match: T0MHJ3_9BACT (Iron-sulfur cluster assembly protein IscA n=2 Tax=unclassified candidate division Zixibacteria TaxID=2751484 RepID=T0MHJ3_9BACT)

HSP 1 Score: 126 bits (317), Expect = 1.110e-35
Identity = 59/106 (55.66%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 MVNLTEKAQQEVSRLIKENELSDSVLRMGVRGGGCSGLSYTLGFDKEVGEYDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSCGCGSSF 318
            M+ L+E+A +E  RLI++    +  LR+GV  GGCSGL+Y + FD+++ E D V+++D G++VA+D++S+LYL GT +D+T DLLGGGFKF NPNAKKSCGCG SF
Sbjct:    1 MITLSERAIKEAKRLIEKQNAQNMYLRVGVEAGGCSGLNYLMSFDEKITEQDKVYDFD-GVKVAVDIRSLLYLMGTTLDYTGDLLGGGFKFVNPNAKKSCGCGHSF 105          
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Match: A0A518BQN2_9BACT (Iron-sulfur cluster insertion protein ErpA n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BQN2_9BACT)

HSP 1 Score: 126 bits (317), Expect = 1.140e-35
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 MVNLTEKAQQEVSRLIKENELSDS-VLRMGVRGGGCSGLSYTLGFDKEVGEYDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSCGCGSSF 318
            M+ +T++A  EV R++ E  L ++ VLR+GV+GGGCSG SYTLGFD + G  D +F   +G+RVA+D KS LYL GT++DF + L+G GFKF NPNA KSCGCG SF
Sbjct:    1 MITVTDRAVGEVRRIVSEQSLPETTVLRVGVKGGGCSGFSYTLGFDDKTGPADQIFE-SNGVRVAVDPKSFLYLSGTQIDFEESLMGRGFKFGNPNASKSCGCGESF 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12234.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W1I166_9BACT2.240e-3755.66FeS cluster assembly protein n=1 Tax=Nitrospira ja... [more]
A0A1W9G482_9BACT3.370e-3757.55[Fe-S]-binding protein n=2 Tax=unclassified Nitros... [more]
A0A2E5X2H1_9BACT3.440e-3761.68Iron-sulfur cluster assembly accessory protein n=2... [more]
A0A7T5RKQ7_9BACT1.440e-3655.56Iron-sulfur cluster assembly accessory protein n=1... [more]
A0A679HIS1_9BACT2.680e-3654.72FeS cluster assembly protein n=1 Tax=Nitrospira sp... [more]
D8P863_9BACT3.910e-3653.77Iron-sulfur cluster assembly protein IscA n=17 Tax... [more]
A0A533Z944_9BACT7.210e-3659.43Iron-sulfur cluster assembly accessory protein n=1... [more]
A0A7V8W470_9BACT7.430e-3655.66Iron-sulfur cluster assembly accessory protein n=1... [more]
T0MHJ3_9BACT1.110e-3555.66Iron-sulfur cluster assembly protein IscA n=2 Tax=... [more]
A0A518BQN2_9BACT1.140e-3557.01Iron-sulfur cluster insertion protein ErpA n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12234contigP-wetherbeei_contig12234:239..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog330214.NIDE4026
PFAMsFe-S_biosyn
Model size327
Max annot lvl40117|Nitrospirae
KEGG koko:K13628
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.42e-37
EggNOG OGsCOG0316@1|root,COG0316@2|Bacteria,3J17Y@40117|Nitrospirae
DescriptionIron-sulphur cluster biosynthesis
Cds size327
COG categoryS
BRITEko00000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185942.6594472-CDS-P-wetherbeei_contig12234:238..5651683185942.6594472-CDS-P-wetherbeei_contig12234:238..565Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12234 239..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12234.1.1prot_P-wetherbeei_contig12234.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12234 239..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12234.1.1

>prot_P-wetherbeei_contig12234.1.1 ID=prot_P-wetherbeei_contig12234.1.1|Name=mRNA_P-wetherbeei_contig12234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MVNLTEKAQQEVSRLIKENELSDSVLRMGVRGGGCSGLSYTLGFDKEVGE
YDHVFNYDDGIRVAIDMKSMLYLKGTEVDFTQDLLGGGFKFNNPNAKKSC
GCGSSFQP*
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mRNA from alignment at P-wetherbeei_contig12234:239..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12234.1.1 ID=mRNA_P-wetherbeei_contig12234.1.1|Name=mRNA_P-wetherbeei_contig12234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig12234:239..565+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTAACCTGACCGAAAAAGCTCAGCAAGAAGTATCGCGCCTGATCAA AGAAAATGAACTCTCCGACTCCGTCCTGCGGATGGGCGTGCGCGGCGGCG GCTGCTCGGGCCTATCTTACACGCTGGGGTTCGACAAAGAGGTCGGCGAA TACGATCACGTATTCAACTATGACGACGGTATCCGCGTCGCCATCGACAT GAAGAGCATGCTCTATCTCAAGGGCACGGAAGTCGACTTTACGCAAGACT TGCTTGGCGGCGGATTCAAGTTCAACAATCCCAACGCCAAGAAGAGCTGC GGCTGCGGCTCCTCGTTCCAGCCCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12234:239..565+

>mRNA_P-wetherbeei_contig12234.1.1 ID=mRNA_P-wetherbeei_contig12234.1.1|Name=mRNA_P-wetherbeei_contig12234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig12234:239..565+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTAACCTGACCGAAAAAGCTCAGCAAGAAGTATCGCGCCTGATCAA
AGAAAATGAACTCTCCGACTCCGTCCTGCGGATGGGCGTGCGCGGCGGCG
GCTGCTCGGGCCTATCTTACACGCTGGGGTTCGACAAAGAGGTCGGCGAA
TACGATCACGTATTCAACTATGACGACGGTATCCGCGTCGCCATCGACAT
GAAGAGCATGCTCTATCTCAAGGGCACGGAAGTCGACTTTACGCAAGACT
TGCTTGGCGGCGGATTCAAGTTCAACAATCCCAACGCCAAGAAGAGCTGC
GGCTGCGGCTCCTCGTTCCAGCCCTAG
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