mRNA_P-wetherbeei_contig1220.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1220.3.1
Unique NamemRNA_P-wetherbeei_contig1220.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Match: D7FNF2_ECTSI (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF2_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.370e-39
Identity = 78/157 (49.68%), Postives = 101/157 (64.33%), Query Frame = 1
Query:    1 FSFVPPPGFVRFRKPLKTHLEEATFKSER-RGYQIGVAVDPIKIDALSRFGTPEEVGERVVAVERAKDGTLEVRLVSAAAGDAGXXXXXXXXXXXGGAVPAYTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEADLPEVAAEMAAAVGSFRLL 468
            F+   P GF  F KPLKTH  E  FKSE  +GY++GVA+DP++I++L  FGTPEEVG RV+ VE+AKDGTL+ +L+  +A   G              +  YTL+Y V+STRG   FVAKV ++   LY CT QAKE D P+V AE+   V SFR+L
Sbjct:  131 FALRYPVGFKGFSKPLKTHKVEVNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGD-------------LSLYTLDYFVESTRGFKHFVAKVTIKDNLLYACTAQAKEKDYPQVEAELKRVVESFRVL 274          
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Match: A0A6H5JQE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE7_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.450e-35
Identity = 76/156 (48.72%), Postives = 100/156 (64.10%), Query Frame = 1
Query:    1 FSFVPPPGFVRFRKPLKTHLEEATFKSER-RGYQIGVAVDPIKIDALSRFGTPEEVGERVVAVERAKDGTLEVRLVSAAAGDAGXXXXXXXXXXXGGAVPAYTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEADLPEVAAEMAAAVGSFRL 465
            F+   P GF  F KPLKTH  E  FKSE  +GY++GVA+DP++I++L  FGTPEEVG RV+ VE+AKDGTL+ +L+  +A   G              +  YTL+Y V++TRG   FVAKV ++   LY CT QAKE D P+V AE+   V SFR+
Sbjct: 1996 FALRYPVGFKGFSKPLKTHKVEVNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGD-------------LSLYTLDYFVENTRGFKHFVAKVTIKDNLLYACTAQAKEKDYPQVEAELKHIVESFRV 2138          
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Match: A0A836CB55_9STRA (PsbP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB55_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.700e-31
Identity = 68/154 (44.16%), Postives = 95/154 (61.69%), Query Frame = 1
Query:    1 FSFVPPPGFVRFRKPLKTHLEEATFKSER-RGYQIGVAVDPIKIDALSRFGTPEEVGERVVAVERAKDGTLEVRLVSAAAGDAGXXXXXXXXXXXGGAVPAYTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEADLPEVAAEMAAAVGSF 459
            FSF  P  F  + K LKTH +E  +KS   RGY+IGVAVDP++I++L +FG+ +EVG +VV VE  KDG LE +L+  ++   G              V AYT+EY V++T   ++FVAKV ++ GRL+VCTG+ K  D     + +  AVGSF
Sbjct:   13 FSFRYPGDFKAYSKLLKTHKQEVNYKSPTARGYEIGVAVDPVRINSLDQFGSAQEVGTKVVNVELGKDGCLEAKLLGTSSERMGD-------------VLAYTIEYYVENTHYTSQFVAKVIIKDGRLFVCTGKCKAKDFDTYGSALREAVGSF 153          
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Match: A0A7S2WW61_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW61_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.920e-31
Identity = 75/158 (47.47%), Postives = 89/158 (56.33%), Query Frame = 1
Query:    1 FSFVPPPGFVRFRKPLKTHLEEATFKSER-RGYQIGVAVDPIKIDALSRFGTPEEVGERVVAVERAKDGTLEVRLVSAA-AGDAGXXXXXXXXXXXGGAVPAYTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEADLPEVAAEMAAAVGSFRLL 468
            + F  P GF    KPLKTHL E   KSE  RGY  G+AVDPIKI +L  FG P  VG RVV VER KDG L   LV A  A DA               +  Y L+Y  +STRG NRF++++A+R G+L+V T Q K+AD   V AE      SF LL
Sbjct:   83 YEFSYPAGFAVTSKPLKTHLVEVNVKSEAVRGYSAGLAVDPIKIPSLEAFGDPTTVGNRVVGVERRKDGVLSADLVGAERAQDAR-------------GIVYYDLDYVAESTRGNNRFLSRIAIREGKLHVFTVQTKQADFGSVEAEARDMAQSFHLL 227          
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Match: A0A7S0QHT9_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHT9_9CRYP)

HSP 1 Score: 116 bits (290), Expect = 6.410e-30
Identity = 68/158 (43.04%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    1 FSFVPPPGFVRFRKPLKTHLEEATFKSER-RGYQIGVAVDPIKIDALSRFGTPEEVGERVVAVERAKDGTLEVRLVSAAAGDAGXXXXXXXXXXXGGAVPAYTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEADLPEVAAEMAAAVGSFRLLP 471
            FS   P  +   +KP+KTHLEE    S+  +G ++GV+VDP+KID ++ FGTP +VG+RVVA+ER+KDG L  +L++    D                VP YT+EYA +STRG  RF+AKVA+   RL+V T QAK        A + A + SF + P
Sbjct:   31 FSVDYPAAWRASQKPVKTHLEEVNLLSDTSKGTELGVSVDPVKIDTVTAFGTPLQVGKRVVALERSKDGVLSAKLIAVGQEDRD-------------GVPYYTIEYASESTRGNRRFLAKVAIVRRRLFVLTAQAKTDSFAADEAALRAGLASFAVDP 175          
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Match: A0A7S0LET4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LET4_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 6.880e-30
Identity = 72/162 (44.44%), Postives = 94/162 (58.02%), Query Frame = 1
Query:    1 FSFVPPPGFVRFRKPLKTHLEEATFKSERRGYQIGVAVDPIKIDALSRFGTPEEVGERVVAVERAKDGTLEVRLVSAAAGDAGXXXXXXXXXXXGGAVPAYTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEADLPEVAAE----MAAAVGSFRLLPP 474
            +S   P G+   +KP+KTHL EA   S R+G  +GV VDP+KID+L  FGTPEEV +RV+AVE  +DG L+V+L S AA DAG                 YT+EY V+STRGK  ++ K  +   RLYV   QAK  D    A++    + A V SFR+  P
Sbjct:   69 YSLSYPSGWNPTQKPVKTHLSEALLNSPRKGVSLGVTVDPVKIDSLEAFGTPEEVADRVLAVEEGRDGVLDVQLRSLAA-DAGKPSY-------------YTIEYFVESTRGKKVYLCKYCIAQKRLYVLQTQAKVVDYDSAASDVQQQLRAIVASFRVSVP 216          
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Match: A0A7R9WT23_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT23_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.510e-28
Identity = 68/155 (43.87%), Postives = 87/155 (56.13%), Query Frame = 1
Query:    1 FSFVPPPGFVRFRKPLKTHLEEATFKSER-RGYQIGVAVDPIKIDALSRFGTPEEVGERVVAVERAKDGTLEVRLVS-AAAGDAGXXXXXXXXXXXGGAVPAYTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEADLPEVAAEMAAAVGSF 459
            ++F PP  F   +KPL+THLEE  F S+  +GYQ G+ VDP++I++L +FGTPEEV  RVV  E  +DG  EV LVS   A D G                +Y LEY  D  RGK  FV K+ V   +LYV T QAKE D   V  E+   + +F
Sbjct:  150 YAFRPPTDFSNTKKPLQTHLEEVNFVSDTTKGYQYGITVDPVRIESLKQFGTPEEVAARVVTAEVNRDGVFEVTLVSDPIASDDG----------------SYVLEYLSDGKRGKKHFVTKIFVSKKKLYVLTAQAKEVDFASVKEELFGTLTTF 288          
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Match: K0RL95_THAOC (PsbP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RL95_THAOC)

HSP 1 Score: 111 bits (278), Expect = 4.580e-27
Identity = 59/138 (42.75%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    1 FSFVPPPGFVRFRKPLKTHLEEATFKSERRGYQIGVAVDPIKIDALSRFGTPEEVGERVVAVERAKDGTLEVRLVSAAAGDAGXXXXXXXXXXXGGAVPAYTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEAD 414
            ++  PP  F    KPLKTHL+E  F  + RGYQ+GV VDP++I ++  FG PE+V  RVV  E  +DG  +V+LV  AA DA               +  Y +EY  D  RG  RFV ++ V+ G LYV T Q+KEA+
Sbjct:  134 YTVTPPASFTSSNKPLKTHLDEINFSGDVRGYQVGVTVDPVRIKSIKEFGDPEQVAARVVTAEVNRDGVFDVKLVKDAAEDA--------------QLGCYDVEYISDGKRGTKRFVTRIYVKEGFLYVLTFQSKEAE 257          
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Match: A0A7S1Z306_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z306_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.060e-26
Identity = 64/157 (40.76%), Postives = 83/157 (52.87%), Query Frame = 1
Query:    1 FSFVPPPGFVRFRKPLKTHLEEATFKSER--RGYQIGVAVDPIKIDALSRFGTPEEVGERVVAVERAKDGTLEVRLVSAAAGDAGXXXXXXXXXXXGGAVPAYTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEADLPEVAAEMAAAVGSFRL 465
            + F+PP GF    KPLKTHL+E  F  E   RGYQ GV VDP++ID+L +FGTPEEV  RVV  E  +DG  +V LV     +                   Y ++Y  D  RGK  FV ++ ++   LYV T QAK  +  E+  EM   V +F L
Sbjct:  122 YEFLPPAGFKEGNKPLKTHLDEVNFAKEGAPRGYQYGVTVDPVRIDSLRQFGTPEEVAARVVTAEVNRDGIFQVTLVKDPVENPNNG--------------CYEIDYLSDGKRGKKNFVTRIFIQKNMLYVLTAQAKVENYEELEQEMLDCVKTFSL 264          
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Match: A0A0G4EN49_VITBC (PsbP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN49_VITBC)

HSP 1 Score: 101 bits (251), Expect = 1.550e-24
Identity = 58/139 (41.73%), Postives = 87/139 (62.59%), Query Frame = 1
Query:   61 EEATFKS-ERRGYQIGVAVDPIKIDALSRFGTPEEVGERVVAVERAKDGTLEVRLVSAAAGDAGXXXXXXXXXXXGGAVPAYTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEADLPEVAAEMAAAVGSFRLLPP 474
            EE  +KS E +GY +GVAVDP+KID+L+ FGTP+ VG+R+V VE+ KDG ++V+L+ A + ++G                 Y +EY  D+TRG N F+ +V V   RL+  T Q+K+ D  +V  +M A V +F ++PP
Sbjct:    5 EEINYKSPEIKGYTVGVAVDPVKIDSLAAFGTPDFVGQRIVDVEKKKDGVIDVQLLKAESLESGGQVF-------------YEVEYTSDTTRGFNHFITRVIVVNQRLFAFTAQSKQKDFDKVRDQMKAIVSTF-VVPP 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1220.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNF2_ECTSI1.370e-3949.68Similar to photosystem II oxygen evolving complex ... [more]
A0A6H5JQE7_9PHAE1.450e-3548.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CB55_9STRA1.700e-3144.16PsbP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2WW61_9STRA7.920e-3147.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0QHT9_9CRYP6.410e-3043.04Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S0LET4_9EUKA6.880e-3044.44Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7R9WT23_9STRA1.510e-2843.87Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
K0RL95_THAOC4.580e-2742.75PsbP domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S1Z306_9STRA1.060e-2640.76Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A0G4EN49_VITBC1.550e-2441.73PsbP domain-containing protein n=1 Tax=Vitrella br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1220contigP-wetherbeei_contig1220:5597..6346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FNF2
PFAMsPsbP
Model size480
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.24e-40
EggNOG OGs2E2MJ@1|root,2S9US@2759|Eukaryota
Ec32 ortholog descriptionSimilar to photosystem II oxygen evolving complex protein PsbP in Synechococcus
Ec32 orthologEc-01_005660.1
DescriptionPsbP
Cds size480
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185941.646139-CDS-P-wetherbeei_contig1220:5596..56951683185941.646139-CDS-P-wetherbeei_contig1220:5596..5695Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1220 5597..5695 +
1683185941.6643672-CDS-P-wetherbeei_contig1220:5965..63461683185941.6643672-CDS-P-wetherbeei_contig1220:5965..6346Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1220 5966..6346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1220.3.1prot_P-wetherbeei_contig1220.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1220 5597..6346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1220.3.1

>prot_P-wetherbeei_contig1220.3.1 ID=prot_P-wetherbeei_contig1220.3.1|Name=mRNA_P-wetherbeei_contig1220.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
FSFVPPPGFVRFRKPLKTHLEEATFKSERRGYQIGVAVDPIKIDALSRFG
TPEEVGERVVAVERAKDGTLEVRLVSAAAGDAGAAADGGGGGGDGGAVPA
YTLEYAVDSTRGKNRFVAKVAVRGGRLYVCTGQAKEADLPEVAAEMAAAV
GSFRLLPPP*
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mRNA from alignment at P-wetherbeei_contig1220:5597..6346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1220.3.1 ID=mRNA_P-wetherbeei_contig1220.3.1|Name=mRNA_P-wetherbeei_contig1220.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig1220:5597..6346+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTCCTTTGTTCCGCCGCCTGGCTTCGTTCGATTCCGAAAGCCCTTAAA AACGCATTTGGAGGAAGCCACCTTTAAATCGGAGCGACGCGGCTACCAGG TGCGCTGAGGGCAGGGCCAGAGTGCGTTCTTCAGACCACGGTGGCTACTT CTGATTCCAGCTCCTTCACGAAATGGCCGGGACTTGACTTGCTTCCAAAA AGCTCCCATTGCTCTATATGCATCACGCACAGCGTTTTCCTCCCTCATCC GTGTCGCCTCGTGGTAATGACGGTTCACCGGGATATGGCCTCTCTCGCGC TTTCTACGGCCGCCCGTTCGCCGCGTCTTTCGATTCGCGTGGGCTGCCTG CCGGTAAACGATCGCCCAGATCGGCGTGGCGGTGGACCCGATCAAGATTG ACGCCCTCTCCCGCTTCGGCACGCCGGAAGAGGTCGGCGAGCGCGTCGTC GCCGTCGAGCGCGCCAAGGACGGCACCCTCGAAGTCCGCCTCGTCTCCGC CGCCGCCGGCGACGCCGGAGCCGCCGCCGACGGTGGCGGCGGCGGCGGCG ACGGAGGGGCTGTCCCGGCGTACACGCTGGAGTACGCTGTGGACAGCACG CGTGGCAAGAACCGGTTCGTCGCTAAGGTGGCCGTGCGCGGCGGGCGGCT CTACGTGTGCACGGGGCAGGCAAAGGAGGCGGACCTGCCGGAGGTTGCCG CCGAGATGGCCGCCGCCGTCGGCAGCTTCCGGCTGCTGCCCCCGCCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1220:5597..6346+

>mRNA_P-wetherbeei_contig1220.3.1 ID=mRNA_P-wetherbeei_contig1220.3.1|Name=mRNA_P-wetherbeei_contig1220.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig1220:5597..6346+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTCCTTTGTTCCGCCGCCTGGCTTCGTTCGATTCCGAAAGCCCTTAAA
AACGCATTTGGAGGAAGCCACCTTTAAATCGGAGCGACGCGGCTACCAGA
TCGGCGTGGCGGTGGACCCGATCAAGATTGACGCCCTCTCCCGCTTCGGC
ACGCCGGAAGAGGTCGGCGAGCGCGTCGTCGCCGTCGAGCGCGCCAAGGA
CGGCACCCTCGAAGTCCGCCTCGTCTCCGCCGCCGCCGGCGACGCCGGAG
CCGCCGCCGACGGTGGCGGCGGCGGCGGCGACGGAGGGGCTGTCCCGGCG
TACACGCTGGAGTACGCTGTGGACAGCACGCGTGGCAAGAACCGGTTCGT
CGCTAAGGTGGCCGTGCGCGGCGGGCGGCTCTACGTGTGCACGGGGCAGG
CAAAGGAGGCGGACCTGCCGGAGGTTGCCGCCGAGATGGCCGCCGCCGTC
GGCAGCTTCCGGCTGCTGCCCCCGCCGTAA
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