mRNA_P-wetherbeei_contig12147.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12147.1.1
Unique NamemRNA_P-wetherbeei_contig12147.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 4.550e-55
Identity = 133/290 (45.86%), Postives = 168/290 (57.93%), Query Frame = 1
Query:    1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRL--------------------PEGAAAA-----TAASVADAVCTELVLPSVAQPIRQAGLELLRNLLAAPRLRAGLS---GTDMLPRLCEQMAGEKDPRCLVAGLQALRLAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGDD 786
            ++RER TLLLAELL+RL  LPLA AS  + A FFS+RL DYPSV PAL AL+ LL++H   L                    P  A AA     TA  +A  V  EL LP+++Q IRQA L +L  L+  P     LS   G   +  L   + GEKDPRCL+ GL ALR  QQ      +  ++EAVFDATACYFPVTFTPPP DPH I+   LR  L  V++G P MA HVLP+L+ KL S V+ A+  ++        A+G    GV  +L A+G A+ +E+VHG D
Sbjct:   70 KVRERATLLLAELLARLPTLPLAAASAARFAGFFSSRLGDYPSVVPALKALSDLLKNHSPALFGGEDASAAGGGVGSSRRSAPAVAVAAGGDGGTAGVIARGVFEELHLPALSQSIRQAALSVLLALVTHPGFTEALSSGMGKTFVDGLVGSLEGEKDPRCLIVGLSALRKTQQGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGV--HLRAIGGAMSEEAVHGSD 357          
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.640e-48
Identity = 135/340 (39.71%), Postives = 168/340 (49.41%), Query Frame = 1
Query:    1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEG----AAAA-----------------------------------------------------------------------TAASVADAVCTELVLPSVAQPIRQAGLELLRNLLAAPRLRAGLS---GTDMLPRLCEQMAGEKDPRCLVAGLQALRLAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGDD 786
            ++RER TLLLAELL RL  LPLA AS  + A FFS+RL DYPSV PAL AL+ LL++H   L  G    AAAA                                                                       TA  +A  V  EL LP+++Q IRQA L +L  L+  P     LS   G   +  L   + GEKDPRCL+ GL ALR  QQ      +  +AEAVFDATACYFPVTFTPPP DPH I+   LR  L  V++G P MA HVLP+L+ KL S V+ A+  ++        A+G    GV  +L A+G A+ +E+VHG D
Sbjct:   66 KVRERATLLLAELLVRLPTLPLAAASAARFAGFFSSRLGDYPSVVPALKALSGLLKNHSPALFGGEDASAAAAGEGEGSPRRLVPAPNVAAGVEGGAGRGGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDGGTAGIIARGVFEELHLPALSQSIRQAALCVLLALVTHPGSTEALSSGMGKAFVDGLVGSLEGEKDPRCLIVGLSALRKTQQGFDPAVLQETAEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGV--HLRAIGGAMSEEAVHGSD 403          
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: W7U6Q4_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Q4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.050e-31
Identity = 101/275 (36.73%), Postives = 139/275 (50.55%), Query Frame = 1
Query:    7 RERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLAA--------PRLRAGLSGT-----------DMLPRLCEQMAGEKDPRCLVAGLQALRLAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESV 774
            R R   LL E+L RL +LPL  A+V    EFFS+RL D+PSV  +L  + ALL+HH+    +      A  +A  +   L +PS+ Q IRQ   E++  ++ A            A  SG            + +  + E + GEKDPRCL+  L  +   Q   P    A   EA+FD TACYFP+TFTPPP DP+GIT   L  +L   +   PSMA  +LPLLV KL S+   A+ +A+          G R   +  NL ++  AL+ E V
Sbjct:  106 RTRSATLLGEVLYRLPSLPLTDAAVHHYVEFFSSRLEDFPSVAGSLLGIRALLQHHKEPAQK-----EAGIIARGLFKHLYVPSMTQTIRQRTFEVVFEMIGALNGAEDTEGECNATTSGAAVPASLLDMQDEFVTGVIECIEGEKDPRCLILCLNIISRVQVIFPAASDA-HIEALFDITACYFPITFTPPPNDPYGITPDVLSHALREALTRRPSMAEFLLPLLVDKLTSTHVPAKLEALLTLQVATRTIGMRA--MLGNLASVTGALFQEIV 372          
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A5D6XS49_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS49_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.100e-30
Identity = 101/276 (36.59%), Postives = 139/276 (50.36%), Query Frame = 1
Query:    7 RERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLAAPRLRAGL------------SGTDMLPRLCEQMAGEKDPRCLVAGLQALR-----LAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783
            R R T LLAE+LSRL  LPL P +V  L +FF+ RLAD+PS    L AL AL  +H  +LP G AA  A  +   +   L +P ++Q +R+   EL++  LA P + A L             G        + M GEKDPR L+  LQ  R     LA      D++    +  FD  +CYFP+TFTPPP DP+GIT+  L  SL         +A H +P L+ KL S+V  A+ DA+        A+      +  ++  +  ALY E V G+
Sbjct:   61 RARATQLLAEVLSRLPELPLTPNAVQLLLDFFADRLADFPSAAACLQALLALASNHARKLP-GPAAMLA--LVQKMVQALHVPQLSQALRKKCFELMQLALAQPSVVAALVAXXXXXXXXXXDGYAFAQAFLDAMEGEKDPRNLLLCLQIARELLATLAPVFARHDQL---LQHYFDVVSCYFPITFTPPPNDPYGITSEELIGSLRRAFAASDLLAKHAVPFLLEKLASTVVEAKLDALQTLVFCCEAYAVNA--LLLHMVPVANALYHEVVKGE 328          
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A8K1CHX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHX8_PYTOL)

HSP 1 Score: 126 bits (316), Expect = 3.570e-29
Identity = 97/269 (36.06%), Postives = 134/269 (49.81%), Query Frame = 1
Query:    1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLAAPRLRAGLSGTDMLPRLCEQ-----MAGEKDPRCLVAGLQALRLAQQHLP---DDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783
            ++R R TLLLAE+L+RL  L L+P++V  L  FF+ RLAD+PS    L AL ALL +H  ++P      T   +   +   L +P + Q +R+    L++  L  P +   L   D L     Q     M GEKDPR L+  LQ  R     L    +    A  +  FD  +CYFP+TFTPPP DP+GIT+  L  SL         +A HVLP L+ KL S+V  A+ D++        A+          L  +  ALY E V G+
Sbjct:   59 KVRTRATLLLAEVLTRLPELALSPSAVQLLLGFFTDRLADFPSASACLQALLALLLNHSKKIPSPL---TTVELIQKLVKALHVPQLGQAMRKQCYSLMQLALGEPSVVRLLVEQDELGLAFAQVFLNSMEGEKDPRNLLLCLQIARELMSTLASVFEKHDTAILQQYFDVVSCYFPITFTPPPNDPYGITSEDLITSLRKAFAASDLLARHVLPFLLEKLSSTVTEAKLDSIQTLVFCCEAYSINV--TLLYLHTIATALYHEVVKGE 322          
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A2P6V489_9CHLO (MMS19 nucleotide excision repair protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V489_9CHLO)

HSP 1 Score: 124 bits (311), Expect = 1.830e-28
Identity = 98/269 (36.43%), Postives = 137/269 (50.93%), Query Frame = 1
Query:    7 RERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAA---------------SVADAVCTELV--------LPSVAQPIRQAGLELLRNLLAA--PRLRAGLSGTDMLPRLCEQMAGEKDPRCLVAGLQALR--LAQQHLPDDE------VAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCR 714
            R R T +LAE+   +     +   V  LA+FF+ARLAD+P+VR AL    AL+      + +GA AATAA               +  D    ELV        + ++AQP R   L LL  + AA  P L A  +  D+L  L   + GEKDPRCL+   +A R  LA  H   +E      +  S+E +F+  AC FP+ FTPPP DP+ IT   L A L AV+   P  A H++PL++ KL SS+  A+ D++       A++G R
Sbjct:  756 RTRATSVLAEVAEAVPGCAASAGDVAHLAQFFTARLADWPAVRGALRGCLALVARAPAAVTDGAPAATAAGPEXXXXXAAAPALPAPTDEAAVELVRTLVGHVFVRALAQPDRALALRLLAAVAAAYGPALLA--ANLDLLEYLISSVDGEKDPRCLLLSFEATRSTLALYHAQPEESLCRGRLEESSEELFEVLACNFPIAFTPPPNDPNRITREQLAAGLEAVLAAEPRFAPHLVPLIMEKLSSSIRQAKLDSLSLLGACAASYGPR 1022          
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: K3WEQ0_GLOUD (MMS19 nucleotide excision repair protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEQ0_GLOUD)

HSP 1 Score: 124 bits (310), Expect = 2.250e-28
Identity = 97/273 (35.53%), Postives = 137/273 (50.18%), Query Frame = 1
Query:    1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRN----------LLAAPRLRAGLSGTDMLPRLCEQMAGEKDPRCLVAGLQALR--LAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783
            ++R R   LLAE+LSRL  LPL P +V  L +FF+ RLADYPS    L AL AL  +H  ++   A+      +   +   L +P + Q +R+   EL++           L+ AP   +   G          M GEKDPR L+  LQ  R  LA+  +  D   A  +  FD  +CYFP+TFTPPP DP+GIT+  L  SL         +A HVLP L+ KL S+V  A+ D++        A+    A    ++ ++  ALY E V G+
Sbjct:   59 KVRARAMQLLAEVLSRLPELPLTPNAVQLLVDFFADRLADYPSASACLQALLALESNHAKKI---ASPTVTIILIQKMVKVLHVPQLGQAMRKQCFELMQLALGQKVVVDVLVTAPESSSIDHGLLFAQAFLNAMEGEKDPRNLLLCLQIARELLAKLEVVFDRHDAVLQQYFDVVSCYFPITFTPPPNDPYGITSEELILSLRKAFAASDLLAKHVLPFLLEKLSSTVVEAKLDSLQTLVFCCEAYSINVA--LLHMLSIANALYHEVVKGE 326          
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A662XHF0_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHF0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 8.970e-27
Identity = 100/288 (34.72%), Postives = 142/288 (49.31%), Query Frame = 1
Query:    1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLA---------------APRLRAGLSGTDMLPRLCEQMA--------GEKDPRCLVAGLQALRLAQQHLPDDEVAASAEAV----FDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783
            ++R R TLLLAE+L+RL  L LAP++V  L  FF+ RLAD+PS    L AL AL  HH  ++   ++  T  ++   + + L +P + Q +R+   EL++  LA               A    A +   +    L  Q A        GEKDPR L+  +Q  R     L  D V A  +A+    FD  +CYFP+ FTPPP DP+GIT+ GL  SL         +A  VLP L+ KL S+V  A+ DA+         +      +   + AL  ALYDE + G+
Sbjct:   59 KVRARATLLLAEVLTRLPDLQLAPSAVQLLLTFFADRLADFPSASACLRALLALETHHAAQV---SSPRTTVALVLKLGSALHIPQLGQAMRKMCFELMQLALARSSVVELLLDSVPANADAQDASVDDAEQSEDLGRQFAQTFLGAMEGEKDPRNLLLCMQVARTLMAKL--DPVFARIDALLQQYFDVVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNA--LLLQMHALATALYDEVLDGE 339          
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A3R7JFL1_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JFL1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.790e-26
Identity = 97/286 (33.92%), Postives = 140/286 (48.95%), Query Frame = 1
Query:    1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLA---------------APRLRAGLSGTDMLPRLCEQMA--------GEKDPRCLVAGLQALR--LAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783
            ++R R TLLLAE+L+RL  L LAP++V  L  FF+ RLAD+PS    L AL AL  HH  ++   ++  T  ++   + T L +P + Q +R+   +L++  LA               A    A +   +    L  Q A        GEKDPR L+  +Q  R  LA+         A  +  FD  +CYFP+ FTPPP DP+GIT+ GL  SL         +A  VLP L+ KL S+V  A+ DA+         +      +   + A+  ALYDE + G+
Sbjct:  429 KVRSRATLLLAEVLTRLPELQLAPSAVQLLMTFFADRLADFPSASACLRALLALETHHAAQV---SSPRTTVALILKLGTTLHIPQLGQAMRKMCFDLIQLALAQNPVVELLLDSVPASADAQDASVDDAEQSEDLGRQFAQTFLSAMEGEKDPRNLLLCMQVARTLLAKLEPVFSRSDALLQQYFDVVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNA--LLLQMHAVATALYDEVLDGE 709          
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A421GLT5_9STRA (MMS19 nucleotide excision repair protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GLT5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.860e-26
Identity = 97/286 (33.92%), Postives = 140/286 (48.95%), Query Frame = 1
Query:    1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLA---------------APRLRAGLSGTDMLPRLCEQMA--------GEKDPRCLVAGLQALR--LAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783
            ++R R TLLLAE+L+RL  L LAP++V  L  FF+ RLAD+PS    L AL AL  HH  ++   ++  T  ++   + T L +P + Q +R+   +L++  LA               A    A +   +    L  Q A        GEKDPR L+  +Q  R  LA+         A  +  FD  +CYFP+ FTPPP DP+GIT+ GL  SL         +A  VLP L+ KL S+V  A+ DA+         +      +   + A+  ALYDE + G+
Sbjct:  430 KVRSRATLLLAEVLTRLPELQLAPSAVQLLMTFFADRLADFPSASACLRALLALETHHAAQV---SSPRTTVALILKLGTTLHIPQLGQAMRKMCFDLIQLALAQNSVVELLLDSVPASADAQDASVDDAEQSEDLGRQFAQTFLSAMEGEKDPRNLLLCMQVARTLLAKLEPVFSRSDALLQQYFDVVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNA--LLLQMHAVATALYDEVLDGE 710          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJJ0_ECTSI4.550e-5545.86MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
A0A6H5KCY0_9PHAE1.640e-4839.71MMS19 nucleotide excision repair protein (Fragment... [more]
W7U6Q4_9STRA2.050e-3136.73MMS19 nucleotide excision repair protein n=2 Tax=M... [more]
A0A5D6XS49_9STRA3.100e-3036.59MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
A0A8K1CHX8_PYTOL3.570e-2936.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P6V489_9CHLO1.830e-2836.43MMS19 nucleotide excision repair protein n=1 Tax=M... [more]
K3WEQ0_GLOUD2.250e-2835.53MMS19 nucleotide excision repair protein n=1 Tax=G... [more]
A0A662XHF0_9STRA8.970e-2734.72MMS19 nucleotide excision repair protein n=2 Tax=N... [more]
A0A3R7JFL1_9STRA5.790e-2633.92MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
A0A421GLT5_9STRA5.860e-2633.92MMS19 nucleotide excision repair protein n=3 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12147contigP-wetherbeei_contig12147:3..1346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJJ0
Preferred nameMMS19
PFAMsMMS19_C,MMS19_N
Model size786
Max annot lvl2759|Eukaryota
KEGG koko:K15075
Hectar predicted targeting categorysignal peptide
GOsGO:0000018,GO:0000160,GO:0000228,GO:0000428,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003712,GO:0003713,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006351,GO:0006355,GO:0006725,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0007059,GO:0007154,GO:0007165,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010569,GO:0010604,GO:0010628,GO:0015630,GO:0016043,GO:0016070,GO:0016226,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022607,GO:0023052,GO:0030159,GO:0030331,GO:0030674,GO:0030880,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031618,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032947,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035258,GO:0035556,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045739,GO:0045893,GO:0045911,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051186,GO:0051252,GO:0051254,GO:0051427,GO:0051604,GO:0051716,GO:0055029,GO:0060090,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071817,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090575,GO:0097361,GO:0097428,GO:0097659,GO:0098687,GO:0106035,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1905168,GO:1990234,GO:2000112,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001141
Exons3
Evalue7.46e-56
EggNOG OGsKOG1967@1|root,KOG1967@2759|Eukaryota
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-17_002170.1
Descriptionpositive regulation of double-strand break repair via homologous recombination
Cds size786
COG categoryS
BRITEko00000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185939.0949101-CDS-P-wetherbeei_contig12147:2..3631683185939.0949101-CDS-P-wetherbeei_contig12147:2..363Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12147 3..363 -
1683185939.103744-CDS-P-wetherbeei_contig12147:709..8551683185939.103744-CDS-P-wetherbeei_contig12147:709..855Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12147 710..855 -
1683185939.1107826-CDS-P-wetherbeei_contig12147:1067..13461683185939.1107826-CDS-P-wetherbeei_contig12147:1067..1346Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12147 1068..1346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12147.1.1prot_P-wetherbeei_contig12147.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12147 3..1346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12147.1.1

>prot_P-wetherbeei_contig12147.1.1 ID=prot_P-wetherbeei_contig12147.1.1|Name=mRNA_P-wetherbeei_contig12147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp
QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTA
LAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLR
NLLAAPRLRAGLSGTDMLPRLCEQMAGEKDPRCLVAGLQALRLAQQHLPD
DEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPS
MAGHVLPLLVGKLRSSVAAAQADAMATAAAAAAAWGCREAGVARNLEALG
EALYDESVHGDD
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mRNA from alignment at P-wetherbeei_contig12147:3..1346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12147.1.1 ID=mRNA_P-wetherbeei_contig12147.1.1|Name=mRNA_P-wetherbeei_contig12147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1344bp|location=Sequence derived from alignment at P-wetherbeei_contig12147:3..1346- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTCCGCGAGCGCGGCACGCTGCTACTGGCCGAGTTGCTCTCCCGTCT GACAGCGCTGCCGCTGGCGCCGGCATCCGTGCCGAAGCTTGCCGAGTTCT TTTCCGCCCGCCTCGCTGACTACCCGTCGGTGCGGCCGGCGCTGACGGCG CTGGCGGCGCTCCTGCGGCACCATGAGACGCGGCTGCCTGAGGGGGCGGC GGCGGCGACGGCGGCGTCGGTGGCGGACGCCGTCTGCACGGAGCTGGTGC TGCCCAGCGTCGCGCAGCCGATACGACAGGTATGTTGAAGGGGAGGGAGA AAGAAGTGGGCGGCAGAGGATCAGGAGTGGATCTAATAGGGCGCTGGACG TCGAGGCCTGGAGAGGCAGTCCACTTTTCATGTTATTTGGTGAGATTTCA GTCTCTGTTGCCATCTTTCATGGGCTCTGCTTGTTGCCATGTGCCGCCTC TGTCGATGAAAACAAGATCCCCTCCTTTTCTTTTCCGGCAGGCGGGGCTG GAGCTGCTGCGAAACCTGCTGGCGGCGCCGCGCCTCCGGGCCGGGCTATC GGGCACCGACATGCTCCCCCGCCTCTGCGAGCAGATGGCGGGTGAGAAGG ACCCGCGCTGCCTAGTCGCCGGCCTCCAGGCCCTCAGGTGGGGCTATCTG TCTGCTTTGTGGGGGCTATCTGTCTGCGTTGTGGGGGCGTGCGCGATGGC CATACCGGTCCCTGCAGCGGCTGCCACGGCGTGAGAATGGCGATATAATG ATAGTATACGTTTTGTCGGTGCAGCGTGCTGGCCGATGGAGCGGGTACCG CGACGGCTTTTTCCCTTGGTGCGAGCGAAATAGGCGCTTTCTTCGTTTTT CTCATCCTTTATCGTCCCCTCTTCCTTTTTCCCTTCCCTCCTCGTCCCCT GTTCTCTGCTCGTTTTTCCTTGATGCATTCTCTCCCTCTATCTCGGCACG TCCCATCCGCTGCTCTTCCTCTCGTTTCCGCAGGCTGGCGCAGCAACACC TGCCTGATGACGAGGTCGCCGCCTCCGCCGAGGCGGTCTTCGATGCCACC GCCTGCTACTTCCCCGTCACCTTCACCCCCCCGCCCGGCGACCCTCACGG CATCACCGCGGCGGGCCTTCGCGCCTCGCTCGCCGCCGTCATGCTCGGCC ACCCATCCATGGCGGGCCACGTGCTGCCGCTGCTGGTGGGGAAGCTGCGG TCGTCGGTAGCGGCCGCGCAGGCGGACGCGATGGCGACGGCGGCGGCGGC GGCAGCAGCGTGGGGCTGCCGGGAAGCGGGTGTGGCGCGGAACCTGGAGG CGCTCGGCGAGGCGCTGTACGACGAGAGCGTCCATGGGGACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12147:3..1346-

>mRNA_P-wetherbeei_contig12147.1.1 ID=mRNA_P-wetherbeei_contig12147.1.1|Name=mRNA_P-wetherbeei_contig12147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig12147:3..1346- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTCCGCGAGCGCGGCACGCTGCTACTGGCCGAGTTGCTCTCCCGTCT
GACAGCGCTGCCGCTGGCGCCGGCATCCGTGCCGAAGCTTGCCGAGTTCT
TTTCCGCCCGCCTCGCTGACTACCCGTCGGTGCGGCCGGCGCTGACGGCG
CTGGCGGCGCTCCTGCGGCACCATGAGACGCGGCTGCCTGAGGGGGCGGC
GGCGGCGACGGCGGCGTCGGTGGCGGACGCCGTCTGCACGGAGCTGGTGC
TGCCCAGCGTCGCGCAGCCGATACGACAGGCGGGGCTGGAGCTGCTGCGA
AACCTGCTGGCGGCGCCGCGCCTCCGGGCCGGGCTATCGGGCACCGACAT
GCTCCCCCGCCTCTGCGAGCAGATGGCGGGTGAGAAGGACCCGCGCTGCC
TAGTCGCCGGCCTCCAGGCCCTCAGGCTGGCGCAGCAACACCTGCCTGAT
GACGAGGTCGCCGCCTCCGCCGAGGCGGTCTTCGATGCCACCGCCTGCTA
CTTCCCCGTCACCTTCACCCCCCCGCCCGGCGACCCTCACGGCATCACCG
CGGCGGGCCTTCGCGCCTCGCTCGCCGCCGTCATGCTCGGCCACCCATCC
ATGGCGGGCCACGTGCTGCCGCTGCTGGTGGGGAAGCTGCGGTCGTCGGT
AGCGGCCGCGCAGGCGGACGCGATGGCGACGGCGGCGGCGGCGGCAGCAG
CGTGGGGCTGCCGGGAAGCGGGTGTGGCGCGGAACCTGGAGGCGCTCGGC
GAGGCGCTGTACGACGAGAGCGTCCATGGGGACGAC
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