mRNA_P-wetherbeei_contig12147.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI) HSP 1 Score: 201 bits (510), Expect = 4.550e-55 Identity = 133/290 (45.86%), Postives = 168/290 (57.93%), Query Frame = 1 Query: 1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRL--------------------PEGAAAA-----TAASVADAVCTELVLPSVAQPIRQAGLELLRNLLAAPRLRAGLS---GTDMLPRLCEQMAGEKDPRCLVAGLQALRLAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGDD 786 ++RER TLLLAELL+RL LPLA AS + A FFS+RL DYPSV PAL AL+ LL++H L P A AA TA +A V EL LP+++Q IRQA L +L L+ P LS G + L + GEKDPRCL+ GL ALR QQ + ++EAVFDATACYFPVTFTPPP DPH I+ LR L V++G P MA HVLP+L+ KL S V+ A+ ++ A+G GV +L A+G A+ +E+VHG D Sbjct: 70 KVRERATLLLAELLARLPTLPLAAASAARFAGFFSSRLGDYPSVVPALKALSDLLKNHSPALFGGEDASAAGGGVGSSRRSAPAVAVAAGGDGGTAGVIARGVFEELHLPALSQSIRQAALSVLLALVTHPGFTEALSSGMGKTFVDGLVGSLEGEKDPRCLIVGLSALRKTQQGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGV--HLRAIGGAMSEEAVHGSD 357
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE) HSP 1 Score: 180 bits (456), Expect = 1.640e-48 Identity = 135/340 (39.71%), Postives = 168/340 (49.41%), Query Frame = 1 Query: 1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEG----AAAA-----------------------------------------------------------------------TAASVADAVCTELVLPSVAQPIRQAGLELLRNLLAAPRLRAGLS---GTDMLPRLCEQMAGEKDPRCLVAGLQALRLAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGDD 786 ++RER TLLLAELL RL LPLA AS + A FFS+RL DYPSV PAL AL+ LL++H L G AAAA TA +A V EL LP+++Q IRQA L +L L+ P LS G + L + GEKDPRCL+ GL ALR QQ + +AEAVFDATACYFPVTFTPPP DPH I+ LR L V++G P MA HVLP+L+ KL S V+ A+ ++ A+G GV +L A+G A+ +E+VHG D Sbjct: 66 KVRERATLLLAELLVRLPTLPLAAASAARFAGFFSSRLGDYPSVVPALKALSGLLKNHSPALFGGEDASAAAAGEGEGSPRRLVPAPNVAAGVEGGAGRGGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDGGTAGIIARGVFEELHLPALSQSIRQAALCVLLALVTHPGSTEALSSGMGKAFVDGLVGSLEGEKDPRCLIVGLSALRKTQQGFDPAVLQETAEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGV--HLRAIGGAMSEEAVHGSD 403
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: W7U6Q4_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Q4_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.050e-31 Identity = 101/275 (36.73%), Postives = 139/275 (50.55%), Query Frame = 1 Query: 7 RERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLAA--------PRLRAGLSGT-----------DMLPRLCEQMAGEKDPRCLVAGLQALRLAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESV 774 R R LL E+L RL +LPL A+V EFFS+RL D+PSV +L + ALL+HH+ + A +A + L +PS+ Q IRQ E++ ++ A A SG + + + E + GEKDPRCL+ L + Q P A EA+FD TACYFP+TFTPPP DP+GIT L +L + PSMA +LPLLV KL S+ A+ +A+ G R + NL ++ AL+ E V Sbjct: 106 RTRSATLLGEVLYRLPSLPLTDAAVHHYVEFFSSRLEDFPSVAGSLLGIRALLQHHKEPAQK-----EAGIIARGLFKHLYVPSMTQTIRQRTFEVVFEMIGALNGAEDTEGECNATTSGAAVPASLLDMQDEFVTGVIECIEGEKDPRCLILCLNIISRVQVIFPAASDA-HIEALFDITACYFPITFTPPPNDPYGITPDVLSHALREALTRRPSMAEFLLPLLVDKLTSTHVPAKLEALLTLQVATRTIGMRA--MLGNLASVTGALFQEIV 372
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A5D6XS49_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS49_9STRA) HSP 1 Score: 129 bits (324), Expect = 3.100e-30 Identity = 101/276 (36.59%), Postives = 139/276 (50.36%), Query Frame = 1 Query: 7 RERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLAAPRLRAGL------------SGTDMLPRLCEQMAGEKDPRCLVAGLQALR-----LAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783 R R T LLAE+LSRL LPL P +V L +FF+ RLAD+PS L AL AL +H +LP G AA A + + L +P ++Q +R+ EL++ LA P + A L G + M GEKDPR L+ LQ R LA D++ + FD +CYFP+TFTPPP DP+GIT+ L SL +A H +P L+ KL S+V A+ DA+ A+ + ++ + ALY E V G+ Sbjct: 61 RARATQLLAEVLSRLPELPLTPNAVQLLLDFFADRLADFPSAAACLQALLALASNHARKLP-GPAAMLA--LVQKMVQALHVPQLSQALRKKCFELMQLALAQPSVVAALVAXXXXXXXXXXDGYAFAQAFLDAMEGEKDPRNLLLCLQIARELLATLAPVFARHDQL---LQHYFDVVSCYFPITFTPPPNDPYGITSEELIGSLRRAFAASDLLAKHAVPFLLEKLASTVVEAKLDALQTLVFCCEAYAVNA--LLLHMVPVANALYHEVVKGE 328
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A8K1CHX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHX8_PYTOL) HSP 1 Score: 126 bits (316), Expect = 3.570e-29 Identity = 97/269 (36.06%), Postives = 134/269 (49.81%), Query Frame = 1 Query: 1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLAAPRLRAGLSGTDMLPRLCEQ-----MAGEKDPRCLVAGLQALRLAQQHLP---DDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783 ++R R TLLLAE+L+RL L L+P++V L FF+ RLAD+PS L AL ALL +H ++P T + + L +P + Q +R+ L++ L P + L D L Q M GEKDPR L+ LQ R L + A + FD +CYFP+TFTPPP DP+GIT+ L SL +A HVLP L+ KL S+V A+ D++ A+ L + ALY E V G+ Sbjct: 59 KVRTRATLLLAEVLTRLPELALSPSAVQLLLGFFTDRLADFPSASACLQALLALLLNHSKKIPSPL---TTVELIQKLVKALHVPQLGQAMRKQCYSLMQLALGEPSVVRLLVEQDELGLAFAQVFLNSMEGEKDPRNLLLCLQIARELMSTLASVFEKHDTAILQQYFDVVSCYFPITFTPPPNDPYGITSEDLITSLRKAFAASDLLARHVLPFLLEKLSSTVTEAKLDSIQTLVFCCEAYSINV--TLLYLHTIATALYHEVVKGE 322
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A2P6V489_9CHLO (MMS19 nucleotide excision repair protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V489_9CHLO) HSP 1 Score: 124 bits (311), Expect = 1.830e-28 Identity = 98/269 (36.43%), Postives = 137/269 (50.93%), Query Frame = 1 Query: 7 RERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAA---------------SVADAVCTELV--------LPSVAQPIRQAGLELLRNLLAA--PRLRAGLSGTDMLPRLCEQMAGEKDPRCLVAGLQALR--LAQQHLPDDE------VAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCR 714 R R T +LAE+ + + V LA+FF+ARLAD+P+VR AL AL+ + +GA AATAA + D ELV + ++AQP R L LL + AA P L A + D+L L + GEKDPRCL+ +A R LA H +E + S+E +F+ AC FP+ FTPPP DP+ IT L A L AV+ P A H++PL++ KL SS+ A+ D++ A++G R Sbjct: 756 RTRATSVLAEVAEAVPGCAASAGDVAHLAQFFTARLADWPAVRGALRGCLALVARAPAAVTDGAPAATAAGPEXXXXXAAAPALPAPTDEAAVELVRTLVGHVFVRALAQPDRALALRLLAAVAAAYGPALLA--ANLDLLEYLISSVDGEKDPRCLLLSFEATRSTLALYHAQPEESLCRGRLEESSEELFEVLACNFPIAFTPPPNDPNRITREQLAAGLEAVLAAEPRFAPHLVPLIMEKLSSSIRQAKLDSLSLLGACAASYGPR 1022
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: K3WEQ0_GLOUD (MMS19 nucleotide excision repair protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEQ0_GLOUD) HSP 1 Score: 124 bits (310), Expect = 2.250e-28 Identity = 97/273 (35.53%), Postives = 137/273 (50.18%), Query Frame = 1 Query: 1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRN----------LLAAPRLRAGLSGTDMLPRLCEQMAGEKDPRCLVAGLQALR--LAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783 ++R R LLAE+LSRL LPL P +V L +FF+ RLADYPS L AL AL +H ++ A+ + + L +P + Q +R+ EL++ L+ AP + G M GEKDPR L+ LQ R LA+ + D A + FD +CYFP+TFTPPP DP+GIT+ L SL +A HVLP L+ KL S+V A+ D++ A+ A ++ ++ ALY E V G+ Sbjct: 59 KVRARAMQLLAEVLSRLPELPLTPNAVQLLVDFFADRLADYPSASACLQALLALESNHAKKI---ASPTVTIILIQKMVKVLHVPQLGQAMRKQCFELMQLALGQKVVVDVLVTAPESSSIDHGLLFAQAFLNAMEGEKDPRNLLLCLQIARELLAKLEVVFDRHDAVLQQYFDVVSCYFPITFTPPPNDPYGITSEELILSLRKAFAASDLLAKHVLPFLLEKLSSTVVEAKLDSLQTLVFCCEAYSINVA--LLHMLSIANALYHEVVKGE 326
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A662XHF0_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHF0_9STRA) HSP 1 Score: 119 bits (298), Expect = 8.970e-27 Identity = 100/288 (34.72%), Postives = 142/288 (49.31%), Query Frame = 1 Query: 1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLA---------------APRLRAGLSGTDMLPRLCEQMA--------GEKDPRCLVAGLQALRLAQQHLPDDEVAASAEAV----FDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783 ++R R TLLLAE+L+RL L LAP++V L FF+ RLAD+PS L AL AL HH ++ ++ T ++ + + L +P + Q +R+ EL++ LA A A + + L Q A GEKDPR L+ +Q R L D V A +A+ FD +CYFP+ FTPPP DP+GIT+ GL SL +A VLP L+ KL S+V A+ DA+ + + + AL ALYDE + G+ Sbjct: 59 KVRARATLLLAEVLTRLPDLQLAPSAVQLLLTFFADRLADFPSASACLRALLALETHHAAQV---SSPRTTVALVLKLGSALHIPQLGQAMRKMCFELMQLALARSSVVELLLDSVPANADAQDASVDDAEQSEDLGRQFAQTFLGAMEGEKDPRNLLLCMQVARTLMAKL--DPVFARIDALLQQYFDVVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNA--LLLQMHALATALYDEVLDGE 339
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A3R7JFL1_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JFL1_9STRA) HSP 1 Score: 117 bits (292), Expect = 5.790e-26 Identity = 97/286 (33.92%), Postives = 140/286 (48.95%), Query Frame = 1 Query: 1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLA---------------APRLRAGLSGTDMLPRLCEQMA--------GEKDPRCLVAGLQALR--LAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783 ++R R TLLLAE+L+RL L LAP++V L FF+ RLAD+PS L AL AL HH ++ ++ T ++ + T L +P + Q +R+ +L++ LA A A + + L Q A GEKDPR L+ +Q R LA+ A + FD +CYFP+ FTPPP DP+GIT+ GL SL +A VLP L+ KL S+V A+ DA+ + + + A+ ALYDE + G+ Sbjct: 429 KVRSRATLLLAEVLTRLPELQLAPSAVQLLMTFFADRLADFPSASACLRALLALETHHAAQV---SSPRTTVALILKLGTTLHIPQLGQAMRKMCFDLIQLALAQNPVVELLLDSVPASADAQDASVDDAEQSEDLGRQFAQTFLSAMEGEKDPRNLLLCMQVARTLLAKLEPVFSRSDALLQQYFDVVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNA--LLLQMHAVATALYDEVLDGE 709
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Match: A0A421GLT5_9STRA (MMS19 nucleotide excision repair protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GLT5_9STRA) HSP 1 Score: 117 bits (292), Expect = 5.860e-26 Identity = 97/286 (33.92%), Postives = 140/286 (48.95%), Query Frame = 1 Query: 1 QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTALAALLRHHETRLPEGAAAATAASVADAVCTELVLPSVAQPIRQAGLELLRNLLA---------------APRLRAGLSGTDMLPRLCEQMA--------GEKDPRCLVAGLQALR--LAQQHLPDDEVAASAEAVFDATACYFPVTFTPPPGDPHGITAAGLRASLAAVMLGHPSMAGHVLPLLVGKLRSSVAAAQADAMXXXXXXXAAWGCREAGVARNLEALGEALYDESVHGD 783 ++R R TLLLAE+L+RL L LAP++V L FF+ RLAD+PS L AL AL HH ++ ++ T ++ + T L +P + Q +R+ +L++ LA A A + + L Q A GEKDPR L+ +Q R LA+ A + FD +CYFP+ FTPPP DP+GIT+ GL SL +A VLP L+ KL S+V A+ DA+ + + + A+ ALYDE + G+ Sbjct: 430 KVRSRATLLLAEVLTRLPELQLAPSAVQLLMTFFADRLADFPSASACLRALLALETHHAAQV---SSPRTTVALILKLGTTLHIPQLGQAMRKMCFDLIQLALAQNSVVELLLDSVPASADAQDASVDDAEQSEDLGRQFAQTFLSAMEGEKDPRNLLLCMQVARTLLAKLEPVFSRSDALLQQYFDVVSCYFPIIFTPPPNDPYGITSEGLILSLRHAFAASDLLAPLVLPFLLKKLASTVVEAKLDALQTLVFCGERYSVNA--LLLQMHAVATALYDEVLDGE 710 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12147.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12147.1.1 >prot_P-wetherbeei_contig12147.1.1 ID=prot_P-wetherbeei_contig12147.1.1|Name=mRNA_P-wetherbeei_contig12147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp QLRERGTLLLAELLSRLTALPLAPASVPKLAEFFSARLADYPSVRPALTAback to top mRNA from alignment at P-wetherbeei_contig12147:3..1346- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12147.1.1 ID=mRNA_P-wetherbeei_contig12147.1.1|Name=mRNA_P-wetherbeei_contig12147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1344bp|location=Sequence derived from alignment at P-wetherbeei_contig12147:3..1346- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12147:3..1346- >mRNA_P-wetherbeei_contig12147.1.1 ID=mRNA_P-wetherbeei_contig12147.1.1|Name=mRNA_P-wetherbeei_contig12147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig12147:3..1346- (Phaeothamnion wetherbeei SAG_119_79)back to top |