mRNA_P-wetherbeei_contig12105.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12105.1.1
Unique NamemRNA_P-wetherbeei_contig12105.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: UPI001B3433A4 (RNA polymerase sigma factor n=2 Tax=Gemmata palustris TaxID=2822762 RepID=UPI001B3433A4)

HSP 1 Score: 166 bits (420), Expect = 1.660e-45
Identity = 90/157 (57.32%), Postives = 107/157 (68.15%), Query Frame = 1
Query:   10 PALVRLQTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVAG 480
            P L R +  + PD  LV RY   RDE AFAELV+RHG MVL+V RR++ N+ADADDVFQA F+VLAR+AG +RP GAVG WLHGV  RTA+EA RRA RR                 A   D+R ++DAEL RLP+  AQVL+LCDME RTRR+VA 
Sbjct:   13 PELARCRYESVPDDALVNRYVHERDEGAFAELVQRHGAMVLAVCRRVLRNSADADDVFQATFMVLARKAGAIRPAGAVGQWLHGVAFRTAREALRRAARRRAKESRVVPREPIPEPVAT--DVRHVLDAELDRLPKTFAQVLILCDMEGRTRRDVAA 167          
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A6P2D1M4_9BACT (Uncharacterized protein n=1 Tax=Gemmata massiliana TaxID=1210884 RepID=A0A6P2D1M4_9BACT)

HSP 1 Score: 164 bits (414), Expect = 1.190e-44
Identity = 90/157 (57.32%), Postives = 106/157 (67.52%), Query Frame = 1
Query:   10 PALVRLQTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVAG 480
            P L R +    PD  LV RY   RDE AF ELV+RHG MVL+V RR++ N+ADADDVFQA F+VLAR+A  +RP GAVGPWLHGV  RTA+EA RRA RR                 A   D+R ++DAEL RLP+A A+VLVLCDME RTRR+VA 
Sbjct:   11 PDLARYRYEGVPDDALVGRYVHERDEGAFTELVQRHGAMVLAVCRRVLRNSADADDVFQATFMVLARKADAIRPAGAVGPWLHGVAFRTAREALRRAARRRAKESRVVPREPIPEPVAP--DVRHVLDAELDRLPKAFARVLVLCDMEGRTRRDVAA 165          
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A8J7TXL6_9BACT (Sigma-70 family RNA polymerase sigma factor (Fragment) n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7TXL6_9BACT)

HSP 1 Score: 131 bits (329), Expect = 3.570e-35
Identity = 75/144 (52.08%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   46 DGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVA 477
            DG+LV  +   RD  AFAELVRRHGPMVL V RR++ N  DA+D FQA FLVLARRA TV P   V  WL+GV  RTA EA+R A RR                 A   DL  ++D EL+RLP  L   +VLCD++ RTRR+VA
Sbjct:   17 DGDLVTAFVVRRDPDAFAELVRRHGPMVLGVGRRVLGNVHDAEDAFQATFLVLARRAATVAPRAMVANWLYGVAYRTALEAQRMAARRRAAETRLKNQPRPPAEPAAHADLSAVLDQELSRLPDRLRLPVVLCDLDGRTRRDVA 160          
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A517Y2T9_9BACT (ECF RNA polymerase sigma factor SigE n=1 Tax=Urbifossiella limnaea TaxID=2528023 RepID=A0A517Y2T9_9BACT)

HSP 1 Score: 139 bits (349), Expect = 5.110e-35
Identity = 79/147 (53.74%), Postives = 93/147 (63.27%), Query Frame = 1
Query:   46 DGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXX--AEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVAG 480
            D +LV R+AR+ D AAFA LVRRHGPMVL+  RR++   ADADD FQA FLVL R+AG VRP GAVG WLHGV VRTAQ+AR  A RR                   AE  +LR ++D ELA+LP      LVLCD+  +TR E A 
Sbjct:   22 DADLVGRFARTADPAAFAALVRRHGPMVLAACRRMLPTPADADDAFQAVFLVLLRKAGAVRPAGAVGGWLHGVAVRTAQKARVAAARRRRREMTRVLTSPEESSLSPAEHAELRAVLDEELAKLPEPQRAALVLCDLAGKTRAEAAA 168          
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A6M5YVT7_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YVT7_9BACT)

HSP 1 Score: 135 bits (339), Expect = 3.730e-34
Identity = 78/149 (52.35%), Postives = 91/149 (61.07%), Query Frame = 1
Query:   46 DGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVA---GW 483
            DG+L+E YA  RD AAFAELVRRHGPMV  V RR + N  DA+D FQA FLVL R+ G VRPP  VG WLHGV VRTAQ+A +  +RR                     DL P++D E+ARLP      +VLCD+E  TRRE A   GW
Sbjct:   19 DGQLLEAYAARRDGAAFAELVRRHGPMVWGVCRRALPNRQDAEDAFQATFLVLVRKPGAVRPPDRVGNWLHGVAVRTAQKAGKVVSRRREHQVESLPEPETVAEGIW-HDLVPVLDREVARLPEKYRLPVVLCDLEGSTRREAAARLGW 166          
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A2Z3HEY5_9BACT (Uncharacterized protein n=1 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3HEY5_9BACT)

HSP 1 Score: 133 bits (335), Expect = 2.990e-33
Identity = 76/149 (51.01%), Postives = 92/149 (61.74%), Query Frame = 1
Query:   34 GAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVR-DLRPIIDAELARLPRALAQVLVLCDMEERTRREVA 477
            GA  DG+L++ +AR RD+ AFAELV RHG MVL V RR++ NAADADD FQA FLVLAR+A  VR    +GPWLHGV    A+  +R   RR                 A+ R +L   +D ELARLP     VLVLCD+E RTR+E A
Sbjct:   15 GARTDGQLLDSFARRRDQGAFAELVHRHGAMVLGVCRRVLGNAADADDAFQAVFLVLARKAAAVRDRERLGPWLHGVAFNAARRLKRSNLRRTARERGRAGQLEQTAGAADERAELHAALDEELARLPDRYRSVLVLCDLEGRTRKEAA 163          
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: UPI0013EA8AF2 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI0013EA8AF2)

HSP 1 Score: 131 bits (329), Expect = 1.140e-32
Identity = 77/153 (50.33%), Postives = 96/153 (62.75%), Query Frame = 1
Query:   25 LQTGAAP--DGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVA 477
             + G AP  DG LVERYA   D  AF  LV RHGPMVLSV +R++ N+ DA+D+FQAAF++LAR+A  +R P  VGPWLHGV  R A++AR R  R                  +E  D+RPI+DAEL RLPRA  +VLVLC +E  T  E +
Sbjct:   17 FRNGVAPSRDGTLVERYAADGDGTAFEALVVRHGPMVLSVCQRILANSHDAEDIFQAAFVLLARKAARLRDPDRVGPWLHGVASRMARKARSRGLRHRRLPLEDGPARESET--SEWSDVRPILDAELGRLPRAQREVLVLCLLEGATADEAS 167          
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: UPI00187D74A2 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Zavarzinella formosa TaxID=360055 RepID=UPI00187D74A2)

HSP 1 Score: 120 bits (302), Expect = 9.510e-32
Identity = 70/152 (46.05%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   25 LQTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXX-AEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVA 477
            LQ     DGEL++R+   RD+ A A L+RRHGPMV  V RR + +  DA+D FQA F+VLAR+A TV+P   V  WL+GV  +TA  ARR  TRR                   +  DLR ++DAEL+RLP     V+VLCD++ RTRR+ A
Sbjct:   12 LQRDGPRDGELLDRFIERRDDEALAALIRRHGPMVWGVCRRFLDHH-DAEDAFQATFIVLARKASTVKPRALVANWLYGVARQTALHARRTVTRRQAREVSVEQVPEPEALRPGQEADLRTVLDAELSRLPDIYRSVIVLCDLDGRTRRDAA 162          
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A2Z3H4Q4_9BACT (Uncharacterized protein n=2 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3H4Q4_9BACT)

HSP 1 Score: 129 bits (324), Expect = 1.050e-31
Identity = 82/165 (49.70%), Postives = 98/165 (59.39%), Query Frame = 1
Query:    1 RMKPALVRL----QTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVR--DLRPIIDAELARLPRALAQVLVLCDMEERTRREVA 477
            R+ P L R+    QT A  DGEL+  +  S    AFAELVRRHGPMVL V RRLI + A ADD FQA FLVLARRA  VRP   VG +L+G+  RTA +AR    RR                 A +   D++P+ID ELARLP  L   +VLCD+E R +REVA
Sbjct:    8 RLMPTLRRVVLGRQTAARTDGELLTAFVASASGDAFAELVRRHGPMVLGVCRRLIPDHATADDAFQAVFLVLARRAAGVRPRERVGAYLYGIAYRTALKARMVLARRRSREKQVDVMPEPPAPPAALAWGDVQPVIDEELARLPEKLRTAVVLCDLEGRPQREVA 172          
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A142XD65_9BACT (ECF RNA polymerase sigma factor SigE n=1 Tax=Gemmata sp. SH-PL17 TaxID=1630693 RepID=A0A142XD65_9BACT)

HSP 1 Score: 126 bits (317), Expect = 1.980e-31
Identity = 75/164 (45.73%), Postives = 92/164 (56.10%), Query Frame = 1
Query:    1 RMKPALVRLQTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVA---GW 483
            R+  AL         D EL ERY R+RD +AF  LVRRHGPMVL V RR++ N  DA+D FQ  FLVL RRA ++R P A+  WLHGV  RT+ EAR    RR                 +   +LR ++D EL RL       +VLCD+E +TRREVA   GW
Sbjct:   11 RLGDALACRHAAGLADTELWERYVRNRDGSAFEALVRRHGPMVLGVCRRILRNEPDAEDAFQITFLVLVRRAASLRAPDAIANWLHGVATRTSLEARDATARRRAKEATVPPRGAIPEGPST--ELRHVLDEELGRLAERYRVAVVLCDLEGKTRREVAEQLGW 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001B3433A41.660e-4557.32RNA polymerase sigma factor n=2 Tax=Gemmata palust... [more]
A0A6P2D1M4_9BACT1.190e-4457.32Uncharacterized protein n=1 Tax=Gemmata massiliana... [more]
A0A8J7TXL6_9BACT3.570e-3552.08Sigma-70 family RNA polymerase sigma factor (Fragm... [more]
A0A517Y2T9_9BACT5.110e-3553.74ECF RNA polymerase sigma factor SigE n=1 Tax=Urbif... [more]
A0A6M5YVT7_9BACT3.730e-3452.35Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
A0A2Z3HEY5_9BACT2.990e-3351.01Uncharacterized protein n=1 Tax=Gemmata obscuriglo... [more]
UPI0013EA8AF21.140e-3250.33sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
UPI00187D74A29.510e-3246.05sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2Z3H4Q4_9BACT1.050e-3149.70Uncharacterized protein n=2 Tax=Gemmata obscuriglo... [more]
A0A142XD65_9BACT1.980e-3145.73ECF RNA polymerase sigma factor SigE n=1 Tax=Gemma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12105contigP-wetherbeei_contig12105:1560..2042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1210884.HG799467_gene13515
PFAMsPD40,Sigma70_r2,Sigma70_r4_2
Model size483
Max annot lvl2|Bacteria
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.34e-32
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria
DescriptionDNA-templated transcription, initiation
Cds size480
COG categoryK
BRITEko00000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.0954418-UTR-P-wetherbeei_contig12105:1559..15621683185938.0954418-UTR-P-wetherbeei_contig12105:1559..1562Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12105 1560..1562 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.1047242-CDS-P-wetherbeei_contig12105:1562..20421683185938.1047242-CDS-P-wetherbeei_contig12105:1562..2042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12105 1563..2042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12105.1.1prot_P-wetherbeei_contig12105.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12105 1563..2042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12105.1.1

>prot_P-wetherbeei_contig12105.1.1 ID=prot_P-wetherbeei_contig12105.1.1|Name=mRNA_P-wetherbeei_contig12105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MKPALVRLQTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLI
HNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRAT
RRRRRESQVPAPQPTPEPEAEVRDLRPIIDAELARLPRALAQVLVLCDME
ERTRREVAGW
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mRNA from alignment at P-wetherbeei_contig12105:1560..2042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12105.1.1 ID=mRNA_P-wetherbeei_contig12105.1.1|Name=mRNA_P-wetherbeei_contig12105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig12105:1560..2042+ (Phaeothamnion wetherbeei SAG_119_79)
CGCATGAAACCCGCCCTCGTTCGGTTGCAGACCGGCGCGGCACCCGACGG GGAACTCGTGGAGCGGTACGCCCGGAGCCGGGACGAGGCCGCGTTCGCCG AGCTGGTGCGCCGCCACGGCCCGATGGTCCTTTCGGTCGCCCGCCGGCTG ATACACAACGCCGCCGACGCGGACGACGTGTTCCAGGCCGCCTTCCTCGT CCTCGCGCGCCGCGCCGGGACCGTCCGGCCGCCCGGTGCGGTCGGCCCCT GGCTCCACGGCGTCACCGTTCGAACCGCACAAGAGGCGCGCCGCCGGGCG ACCCGGCGGCGGCGGAGGGAGAGTCAGGTGCCCGCACCCCAGCCGACCCC GGAACCCGAGGCGGAGGTCCGGGACCTGCGCCCCATCATCGACGCCGAAC TCGCGCGGCTGCCCCGTGCGCTGGCGCAGGTGCTGGTCCTGTGCGACATG GAAGAGCGGACCCGGCGGGAGGTTGCCGGGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12105:1560..2042+

>mRNA_P-wetherbeei_contig12105.1.1 ID=mRNA_P-wetherbeei_contig12105.1.1|Name=mRNA_P-wetherbeei_contig12105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig12105:1560..2042+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACCCGCCCTCGTTCGGTTGCAGACCGGCGCGGCACCCGACGGGGA
ACTCGTGGAGCGGTACGCCCGGAGCCGGGACGAGGCCGCGTTCGCCGAGC
TGGTGCGCCGCCACGGCCCGATGGTCCTTTCGGTCGCCCGCCGGCTGATA
CACAACGCCGCCGACGCGGACGACGTGTTCCAGGCCGCCTTCCTCGTCCT
CGCGCGCCGCGCCGGGACCGTCCGGCCGCCCGGTGCGGTCGGCCCCTGGC
TCCACGGCGTCACCGTTCGAACCGCACAAGAGGCGCGCCGCCGGGCGACC
CGGCGGCGGCGGAGGGAGAGTCAGGTGCCCGCACCCCAGCCGACCCCGGA
ACCCGAGGCGGAGGTCCGGGACCTGCGCCCCATCATCGACGCCGAACTCG
CGCGGCTGCCCCGTGCGCTGGCGCAGGTGCTGGTCCTGTGCGACATGGAA
GAGCGGACCCGGCGGGAGGTTGCCGGGTGG
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