mRNA_P-wetherbeei_contig12105.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: UPI001B3433A4 (RNA polymerase sigma factor n=2 Tax=Gemmata palustris TaxID=2822762 RepID=UPI001B3433A4) HSP 1 Score: 166 bits (420), Expect = 1.660e-45 Identity = 90/157 (57.32%), Postives = 107/157 (68.15%), Query Frame = 1 Query: 10 PALVRLQTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVAG 480 P L R + + PD LV RY RDE AFAELV+RHG MVL+V RR++ N+ADADDVFQA F+VLAR+AG +RP GAVG WLHGV RTA+EA RRA RR A D+R ++DAEL RLP+ AQVL+LCDME RTRR+VA Sbjct: 13 PELARCRYESVPDDALVNRYVHERDEGAFAELVQRHGAMVLAVCRRVLRNSADADDVFQATFMVLARKAGAIRPAGAVGQWLHGVAFRTAREALRRAARRRAKESRVVPREPIPEPVAT--DVRHVLDAELDRLPKTFAQVLILCDMEGRTRRDVAA 167
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A6P2D1M4_9BACT (Uncharacterized protein n=1 Tax=Gemmata massiliana TaxID=1210884 RepID=A0A6P2D1M4_9BACT) HSP 1 Score: 164 bits (414), Expect = 1.190e-44 Identity = 90/157 (57.32%), Postives = 106/157 (67.52%), Query Frame = 1 Query: 10 PALVRLQTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVAG 480 P L R + PD LV RY RDE AF ELV+RHG MVL+V RR++ N+ADADDVFQA F+VLAR+A +RP GAVGPWLHGV RTA+EA RRA RR A D+R ++DAEL RLP+A A+VLVLCDME RTRR+VA Sbjct: 11 PDLARYRYEGVPDDALVGRYVHERDEGAFTELVQRHGAMVLAVCRRVLRNSADADDVFQATFMVLARKADAIRPAGAVGPWLHGVAFRTAREALRRAARRRAKESRVVPREPIPEPVAP--DVRHVLDAELDRLPKAFARVLVLCDMEGRTRRDVAA 165
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A8J7TXL6_9BACT (Sigma-70 family RNA polymerase sigma factor (Fragment) n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7TXL6_9BACT) HSP 1 Score: 131 bits (329), Expect = 3.570e-35 Identity = 75/144 (52.08%), Postives = 89/144 (61.81%), Query Frame = 1 Query: 46 DGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVA 477 DG+LV + RD AFAELVRRHGPMVL V RR++ N DA+D FQA FLVLARRA TV P V WL+GV RTA EA+R A RR A DL ++D EL+RLP L +VLCD++ RTRR+VA Sbjct: 17 DGDLVTAFVVRRDPDAFAELVRRHGPMVLGVGRRVLGNVHDAEDAFQATFLVLARRAATVAPRAMVANWLYGVAYRTALEAQRMAARRRAAETRLKNQPRPPAEPAAHADLSAVLDQELSRLPDRLRLPVVLCDLDGRTRRDVA 160
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A517Y2T9_9BACT (ECF RNA polymerase sigma factor SigE n=1 Tax=Urbifossiella limnaea TaxID=2528023 RepID=A0A517Y2T9_9BACT) HSP 1 Score: 139 bits (349), Expect = 5.110e-35 Identity = 79/147 (53.74%), Postives = 93/147 (63.27%), Query Frame = 1 Query: 46 DGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXX--AEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVAG 480 D +LV R+AR+ D AAFA LVRRHGPMVL+ RR++ ADADD FQA FLVL R+AG VRP GAVG WLHGV VRTAQ+AR A RR AE +LR ++D ELA+LP LVLCD+ +TR E A Sbjct: 22 DADLVGRFARTADPAAFAALVRRHGPMVLAACRRMLPTPADADDAFQAVFLVLLRKAGAVRPAGAVGGWLHGVAVRTAQKARVAAARRRRREMTRVLTSPEESSLSPAEHAELRAVLDEELAKLPEPQRAALVLCDLAGKTRAEAAA 168
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A6M5YVT7_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YVT7_9BACT) HSP 1 Score: 135 bits (339), Expect = 3.730e-34 Identity = 78/149 (52.35%), Postives = 91/149 (61.07%), Query Frame = 1 Query: 46 DGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVA---GW 483 DG+L+E YA RD AAFAELVRRHGPMV V RR + N DA+D FQA FLVL R+ G VRPP VG WLHGV VRTAQ+A + +RR DL P++D E+ARLP +VLCD+E TRRE A GW Sbjct: 19 DGQLLEAYAARRDGAAFAELVRRHGPMVWGVCRRALPNRQDAEDAFQATFLVLVRKPGAVRPPDRVGNWLHGVAVRTAQKAGKVVSRRREHQVESLPEPETVAEGIW-HDLVPVLDREVARLPEKYRLPVVLCDLEGSTRREAAARLGW 166
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A2Z3HEY5_9BACT (Uncharacterized protein n=1 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3HEY5_9BACT) HSP 1 Score: 133 bits (335), Expect = 2.990e-33 Identity = 76/149 (51.01%), Postives = 92/149 (61.74%), Query Frame = 1 Query: 34 GAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVR-DLRPIIDAELARLPRALAQVLVLCDMEERTRREVA 477 GA DG+L++ +AR RD+ AFAELV RHG MVL V RR++ NAADADD FQA FLVLAR+A VR +GPWLHGV A+ +R RR A+ R +L +D ELARLP VLVLCD+E RTR+E A Sbjct: 15 GARTDGQLLDSFARRRDQGAFAELVHRHGAMVLGVCRRVLGNAADADDAFQAVFLVLARKAAAVRDRERLGPWLHGVAFNAARRLKRSNLRRTARERGRAGQLEQTAGAADERAELHAALDEELARLPDRYRSVLVLCDLEGRTRKEAA 163
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: UPI0013EA8AF2 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI0013EA8AF2) HSP 1 Score: 131 bits (329), Expect = 1.140e-32 Identity = 77/153 (50.33%), Postives = 96/153 (62.75%), Query Frame = 1 Query: 25 LQTGAAP--DGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVA 477 + G AP DG LVERYA D AF LV RHGPMVLSV +R++ N+ DA+D+FQAAF++LAR+A +R P VGPWLHGV R A++AR R R +E D+RPI+DAEL RLPRA +VLVLC +E T E + Sbjct: 17 FRNGVAPSRDGTLVERYAADGDGTAFEALVVRHGPMVLSVCQRILANSHDAEDIFQAAFVLLARKAARLRDPDRVGPWLHGVASRMARKARSRGLRHRRLPLEDGPARESET--SEWSDVRPILDAELGRLPRAQREVLVLCLLEGATADEAS 167
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: UPI00187D74A2 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Zavarzinella formosa TaxID=360055 RepID=UPI00187D74A2) HSP 1 Score: 120 bits (302), Expect = 9.510e-32 Identity = 70/152 (46.05%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 25 LQTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXX-AEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVA 477 LQ DGEL++R+ RD+ A A L+RRHGPMV V RR + + DA+D FQA F+VLAR+A TV+P V WL+GV +TA ARR TRR + DLR ++DAEL+RLP V+VLCD++ RTRR+ A Sbjct: 12 LQRDGPRDGELLDRFIERRDDEALAALIRRHGPMVWGVCRRFLDHH-DAEDAFQATFIVLARKASTVKPRALVANWLYGVARQTALHARRTVTRRQAREVSVEQVPEPEALRPGQEADLRTVLDAELSRLPDIYRSVIVLCDLDGRTRRDAA 162
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A2Z3H4Q4_9BACT (Uncharacterized protein n=2 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3H4Q4_9BACT) HSP 1 Score: 129 bits (324), Expect = 1.050e-31 Identity = 82/165 (49.70%), Postives = 98/165 (59.39%), Query Frame = 1 Query: 1 RMKPALVRL----QTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVR--DLRPIIDAELARLPRALAQVLVLCDMEERTRREVA 477 R+ P L R+ QT A DGEL+ + S AFAELVRRHGPMVL V RRLI + A ADD FQA FLVLARRA VRP VG +L+G+ RTA +AR RR A + D++P+ID ELARLP L +VLCD+E R +REVA Sbjct: 8 RLMPTLRRVVLGRQTAARTDGELLTAFVASASGDAFAELVRRHGPMVLGVCRRLIPDHATADDAFQAVFLVLARRAAGVRPRERVGAYLYGIAYRTALKARMVLARRRSREKQVDVMPEPPAPPAALAWGDVQPVIDEELARLPEKLRTAVVLCDLEGRPQREVA 172
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Match: A0A142XD65_9BACT (ECF RNA polymerase sigma factor SigE n=1 Tax=Gemmata sp. SH-PL17 TaxID=1630693 RepID=A0A142XD65_9BACT) HSP 1 Score: 126 bits (317), Expect = 1.980e-31 Identity = 75/164 (45.73%), Postives = 92/164 (56.10%), Query Frame = 1 Query: 1 RMKPALVRLQTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIHNAADADDVFQAAFLVLARRAGTVRPPGAVGPWLHGVTVRTAQEARRRATRRXXXXXXXXXXXXXXXXXAEVRDLRPIIDAELARLPRALAQVLVLCDMEERTRREVA---GW 483 R+ AL D EL ERY R+RD +AF LVRRHGPMVL V RR++ N DA+D FQ FLVL RRA ++R P A+ WLHGV RT+ EAR RR + +LR ++D EL RL +VLCD+E +TRREVA GW Sbjct: 11 RLGDALACRHAAGLADTELWERYVRNRDGSAFEALVRRHGPMVLGVCRRILRNEPDAEDAFQITFLVLVRRAASLRAPDAIANWLHGVATRTSLEARDATARRRAKEATVPPRGAIPEGPST--ELRHVLDEELGRLAERYRVAVVLCDLEGKTRREVAEQLGW 172 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12105.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12105.1.1 >prot_P-wetherbeei_contig12105.1.1 ID=prot_P-wetherbeei_contig12105.1.1|Name=mRNA_P-wetherbeei_contig12105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp MKPALVRLQTGAAPDGELVERYARSRDEAAFAELVRRHGPMVLSVARRLIback to top mRNA from alignment at P-wetherbeei_contig12105:1560..2042+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12105.1.1 ID=mRNA_P-wetherbeei_contig12105.1.1|Name=mRNA_P-wetherbeei_contig12105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig12105:1560..2042+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12105:1560..2042+ >mRNA_P-wetherbeei_contig12105.1.1 ID=mRNA_P-wetherbeei_contig12105.1.1|Name=mRNA_P-wetherbeei_contig12105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig12105:1560..2042+ (Phaeothamnion wetherbeei SAG_119_79)back to top |