mRNA_P-wetherbeei_contig12059.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A7W0QJ81_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0QJ81_9ACTN) HSP 1 Score: 176 bits (446), Expect = 4.550e-54 Identity = 83/141 (58.87%), Postives = 106/141 (75.18%), Query Frame = 1 Query: 10 EFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV 432 EFE FV +++P LRRALAGH+P+ V DA++EA A+AWEHW V+ + NP GYLFRVAQSRSR R++G LP P+ R PDVEP L A R+LP +QRT+ WLVH CGWT EA AM+I+AS+V TH++R +LR +GV Sbjct: 7 EFEAFVARIEPDLRRALAGHLPVHAVPDAISEAFAFAWEHWTTVKELHNPGGYLFRVAQSRSRRRLEGVLPAPESPRDPDVEPGLPAAFRALPERQRTAAWLVHGCGWTMVEAGEAMNIAASSVATHVSRAMDSLRTAMGV 147
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A349B171_9ACTN (Sigma70_r4_2 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B171_9ACTN) HSP 1 Score: 165 bits (417), Expect = 1.170e-49 Identity = 82/142 (57.75%), Postives = 100/142 (70.42%), Query Frame = 1 Query: 10 EFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGVN 435 +F+ F + P LRRAL +D DA AEALAYAWEHWDR+R MD P GYLFRV QS++RSR LPPP+ PD+EP+LV A++SLP QQRT IWLVHAC WT+AE A A+DI+AS+V TH +R LR L V+ Sbjct: 5 DFDDFAAEAHPRLRRALIATRGVDGAADAAAEALAYAWEHWDRIRVMDRPLGYLFRVGQSKTRSRRQACLPPPEILGVPDLEPKLVPALQSLPEQQRTVIWLVHACQWTHAEVAEALDITASSVATHGSRALMKLRSLLEVD 146
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A538HGZ9_9ACTN (Sigma70_r4_2 domain-containing protein n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HGZ9_9ACTN) HSP 1 Score: 161 bits (408), Expect = 3.350e-47 Identity = 83/141 (58.87%), Postives = 100/141 (70.92%), Query Frame = 1 Query: 10 EFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV 432 EFE FV + +P LRRALAG + D VGDA+AEA AYAWEH DRV M++P GYLFRV QS++R R G LP D PDVEP LV A+ +L Q ++WLVHACGWTY E A A+ +SAS VG+H++R LRERLGV Sbjct: 88 EFEQFVMRTEPGLRRALAGCLARDAVGDALAEAFAYAWEHRDRVMRMEHPRGYLFRVGQSKARRRKHGFLPWSSLDAMPDVEPGLVGALAALSPAQFQAVWLVHACGWTYPETAEALHVSASTVGSHVSRALGRLRERLGV 228
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A520XX61_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XX61_9ACTN) HSP 1 Score: 154 bits (390), Expect = 1.620e-45 Identity = 77/140 (55.00%), Postives = 98/140 (70.00%), Query Frame = 1 Query: 10 EFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLG 429 EFE FV +V+P LRRA AG + DR DAV+EALA+AWE+ DR+ + NP GYLFRV QS +R LPPPDP R P +EP LV+ + +L QRT++WLVHAC W++AE A AM++ S V TH++RG ALR LG Sbjct: 8 EFERFVTEVEPRLRRAFAGALGPDRSSDAVSEALAWAWENRDRLDELRNPVGYLFRVGQSMTRRPKRPELPPPDPGRIPTIEPGLVDGLLALSENQRTAVWLVHACSWSHAEVAEAMELGTSTVATHVSRGLDALRNHLG 147
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A848UHM3_9ACTN (Sigma70_r4_2 domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UHM3_9ACTN) HSP 1 Score: 148 bits (374), Expect = 3.850e-43 Identity = 74/141 (52.48%), Postives = 94/141 (66.67%), Query Frame = 1 Query: 10 EFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV 432 +FETFV +P LRRAL G + +DRV DAV EALAYA+EHW +R MDNP GYL+RV QS+SR R L PD P+VEP L +A+ +LP QR ++WL H C W++ E A + +S S V TH++RG LR LGV Sbjct: 6 DFETFVSDAEPRLRRALLGAVGVDRVQDAVGEALAYAYEHWGELRLMDNPVGYLYRVGQSKSRPRKRLRLFQRSPDLIPEVEPGLPDALAALPDTQRIAVWLAHGCDWSHDEIATTLGVSRSTVATHVSRGLTRLRTELGV 146
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A7K1BC28_9ACTN (Sigma70_r4_2 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1BC28_9ACTN) HSP 1 Score: 143 bits (361), Expect = 4.080e-41 Identity = 76/141 (53.90%), Postives = 93/141 (65.96%), Query Frame = 1 Query: 13 FETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPD-PDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV 432 F+ FV +P LRRAL G + +DRV DAVAEAL YA+EH R+ M NP GYLFRV QSR+R R L D P PDVEPRL+ A++ LP QR ++WL H CGW +AE A +D+S S V TH++RG LR LGV Sbjct: 7 FDAFVRDAEPRLRRALLGAVGVDRVDDAVAEALGYAYEHRARLDEMANPVGYLFRVGQSRTRQRKPLRLFRSDEPVHIPDVEPRLIGALQELPDTQRIAVWLAHGCGWPHAEIADVLDVSPSTVATHVSRGLQRLRTELGV 147
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A2E0RSA1_9ACTN (Sigma70_r4_2 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RSA1_9ACTN) HSP 1 Score: 136 bits (342), Expect = 3.010e-38 Identity = 76/150 (50.67%), Postives = 98/150 (65.33%), Query Frame = 1 Query: 1 MSDE--FETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV-NTH 441 M+DE F+ FV P L RAL G + +DR+ DAVAEA+A+A+EH + AM+NP GY++RV S+ R R L P PDVEP LV AM SLP QRT++WL H C WT+AE A MD++ S V TH++RG +LR+ LGV N H Sbjct: 1 MTDEMTFDEFVAAATPRLHRALIGSVGVDRLDDAVAEAVAWAFEHQAEISAMNNPVGYMYRVGVSKVRRRRRLRLFRDVPVTIPDVEPGLVGAMLSLPESQRTAVWLAHGCHWTHAEIAEVMDLAPSTVATHVSRGMHSLRKALGVINAH 150
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A7X7HQZ0_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HQZ0_9ACTN) HSP 1 Score: 129 bits (323), Expect = 3.430e-35 Identity = 74/147 (50.34%), Postives = 89/147 (60.54%), Query Frame = 1 Query: 4 SDEFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGVNTHE 444 S FE FV +P LRRA ID DA AEALA+AWEHWD V+ M NP GYL+RV SR+R R G L +P A EP LV A+ L +QRT++ LVH CGWT+ E A AM I VGTH++R LR LGV++ E Sbjct: 13 SGGFEAFVVDAEPRLRRAFTLLRGIDAGRDATAEALAWAWEHWDFVQEMTNPVGYLYRVGSSRTRRRRAG-LAAVEPTEAHRFEPGLVPALERLSEKQRTAVVLVHGCGWTHQEVADAMGIRRPTVGTHVSRAMDHLRRELGVDSGE 158
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A7Y2NAY6_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2NAY6_9ACTN) HSP 1 Score: 128 bits (322), Expect = 3.630e-35 Identity = 68/147 (46.26%), Postives = 93/147 (63.27%), Query Frame = 1 Query: 4 SDEFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDR-APDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGVNTH 441 S+ F FV +V+P LR AL + + +A AEALAYAWEHW R+ AM+N +GYL+RV +SR R R + P P R P+VEP L +A+ L +QR ++ +VHA W+ EAA + +S S + THL RG A LR+ LGV +H Sbjct: 8 SESFTIFVKEVEPRLRHALVASLGQEEGREATAEALAYAWEHWGRLEAMENAAGYLYRVGRSRGRPRRSRPVFDPVPSRHLPEVEPGLPDALSGLSEKQRVAVVMVHAYEWSRGEAAEVLGVSVSTLDTHLQRGLAKLRDGLGVQSH 154
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A7X7D752_9ACTN (HTH luxR-type domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D752_9ACTN) HSP 1 Score: 128 bits (322), Expect = 3.740e-35 Identity = 72/147 (48.98%), Postives = 91/147 (61.90%), Query Frame = 1 Query: 7 DEFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPD-----PDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV 432 + F FV +P LRRAL DAVAEALA+AWE+W++V MDNP GYL+RV SR+R+R ++P P+ A EP L A+ L +QRT + LVH CGW+Y E AAA+D+S SAVGTH+AR LR LGV Sbjct: 8 EAFSVFVTDAEPRLRRALCAMRGPVAGRDAVAEALAWAWENWEQVTEMDNPVGYLYRVGASRTRTRRLEAVPVPEVAVPGTGHASAFEPGLAPALARLSDRQRTVVVLVHGCGWSYTEVAAALDLSKSAVGTHVARALEQLRSDLGV 154 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12059.1.1 >prot_P-wetherbeei_contig12059.1.1 ID=prot_P-wetherbeei_contig12059.1.1|Name=mRNA_P-wetherbeei_contig12059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp MSDEFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMback to top mRNA from alignment at P-wetherbeei_contig12059:229..675+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12059.1.1 ID=mRNA_P-wetherbeei_contig12059.1.1|Name=mRNA_P-wetherbeei_contig12059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig12059:229..675+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12059:229..675+ >mRNA_P-wetherbeei_contig12059.1.1 ID=mRNA_P-wetherbeei_contig12059.1.1|Name=mRNA_P-wetherbeei_contig12059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig12059:229..675+ (Phaeothamnion wetherbeei SAG_119_79)back to top |