mRNA_P-wetherbeei_contig12059.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12059.1.1
Unique NamemRNA_P-wetherbeei_contig12059.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A7W0QJ81_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0QJ81_9ACTN)

HSP 1 Score: 176 bits (446), Expect = 4.550e-54
Identity = 83/141 (58.87%), Postives = 106/141 (75.18%), Query Frame = 1
Query:   10 EFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV 432
            EFE FV +++P LRRALAGH+P+  V DA++EA A+AWEHW  V+ + NP GYLFRVAQSRSR R++G LP P+  R PDVEP L  A R+LP +QRT+ WLVH CGWT  EA  AM+I+AS+V TH++R   +LR  +GV
Sbjct:    7 EFEAFVARIEPDLRRALAGHLPVHAVPDAISEAFAFAWEHWTTVKELHNPGGYLFRVAQSRSRRRLEGVLPAPESPRDPDVEPGLPAAFRALPERQRTAAWLVHGCGWTMVEAGEAMNIAASSVATHVSRAMDSLRTAMGV 147          
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A349B171_9ACTN (Sigma70_r4_2 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B171_9ACTN)

HSP 1 Score: 165 bits (417), Expect = 1.170e-49
Identity = 82/142 (57.75%), Postives = 100/142 (70.42%), Query Frame = 1
Query:   10 EFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGVN 435
            +F+ F  +  P LRRAL     +D   DA AEALAYAWEHWDR+R MD P GYLFRV QS++RSR    LPPP+    PD+EP+LV A++SLP QQRT IWLVHAC WT+AE A A+DI+AS+V TH +R    LR  L V+
Sbjct:    5 DFDDFAAEAHPRLRRALIATRGVDGAADAAAEALAYAWEHWDRIRVMDRPLGYLFRVGQSKTRSRRQACLPPPEILGVPDLEPKLVPALQSLPEQQRTVIWLVHACQWTHAEVAEALDITASSVATHGSRALMKLRSLLEVD 146          
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A538HGZ9_9ACTN (Sigma70_r4_2 domain-containing protein n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HGZ9_9ACTN)

HSP 1 Score: 161 bits (408), Expect = 3.350e-47
Identity = 83/141 (58.87%), Postives = 100/141 (70.92%), Query Frame = 1
Query:   10 EFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV 432
            EFE FV + +P LRRALAG +  D VGDA+AEA AYAWEH DRV  M++P GYLFRV QS++R R  G LP    D  PDVEP LV A+ +L   Q  ++WLVHACGWTY E A A+ +SAS VG+H++R    LRERLGV
Sbjct:   88 EFEQFVMRTEPGLRRALAGCLARDAVGDALAEAFAYAWEHRDRVMRMEHPRGYLFRVGQSKARRRKHGFLPWSSLDAMPDVEPGLVGALAALSPAQFQAVWLVHACGWTYPETAEALHVSASTVGSHVSRALGRLRERLGV 228          
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A520XX61_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XX61_9ACTN)

HSP 1 Score: 154 bits (390), Expect = 1.620e-45
Identity = 77/140 (55.00%), Postives = 98/140 (70.00%), Query Frame = 1
Query:   10 EFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLG 429
            EFE FV +V+P LRRA AG +  DR  DAV+EALA+AWE+ DR+  + NP GYLFRV QS +R      LPPPDP R P +EP LV+ + +L   QRT++WLVHAC W++AE A AM++  S V TH++RG  ALR  LG
Sbjct:    8 EFERFVTEVEPRLRRAFAGALGPDRSSDAVSEALAWAWENRDRLDELRNPVGYLFRVGQSMTRRPKRPELPPPDPGRIPTIEPGLVDGLLALSENQRTAVWLVHACSWSHAEVAEAMELGTSTVATHVSRGLDALRNHLG 147          
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A848UHM3_9ACTN (Sigma70_r4_2 domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UHM3_9ACTN)

HSP 1 Score: 148 bits (374), Expect = 3.850e-43
Identity = 74/141 (52.48%), Postives = 94/141 (66.67%), Query Frame = 1
Query:   10 EFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV 432
            +FETFV   +P LRRAL G + +DRV DAV EALAYA+EHW  +R MDNP GYL+RV QS+SR R    L    PD  P+VEP L +A+ +LP  QR ++WL H C W++ E A  + +S S V TH++RG   LR  LGV
Sbjct:    6 DFETFVSDAEPRLRRALLGAVGVDRVQDAVGEALAYAYEHWGELRLMDNPVGYLYRVGQSKSRPRKRLRLFQRSPDLIPEVEPGLPDALAALPDTQRIAVWLAHGCDWSHDEIATTLGVSRSTVATHVSRGLTRLRTELGV 146          
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A7K1BC28_9ACTN (Sigma70_r4_2 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1BC28_9ACTN)

HSP 1 Score: 143 bits (361), Expect = 4.080e-41
Identity = 76/141 (53.90%), Postives = 93/141 (65.96%), Query Frame = 1
Query:   13 FETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPD-PDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV 432
            F+ FV   +P LRRAL G + +DRV DAVAEAL YA+EH  R+  M NP GYLFRV QSR+R R    L   D P   PDVEPRL+ A++ LP  QR ++WL H CGW +AE A  +D+S S V TH++RG   LR  LGV
Sbjct:    7 FDAFVRDAEPRLRRALLGAVGVDRVDDAVAEALGYAYEHRARLDEMANPVGYLFRVGQSRTRQRKPLRLFRSDEPVHIPDVEPRLIGALQELPDTQRIAVWLAHGCGWPHAEIADVLDVSPSTVATHVSRGLQRLRTELGV 147          
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A2E0RSA1_9ACTN (Sigma70_r4_2 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RSA1_9ACTN)

HSP 1 Score: 136 bits (342), Expect = 3.010e-38
Identity = 76/150 (50.67%), Postives = 98/150 (65.33%), Query Frame = 1
Query:    1 MSDE--FETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV-NTH 441
            M+DE  F+ FV    P L RAL G + +DR+ DAVAEA+A+A+EH   + AM+NP GY++RV  S+ R R    L    P   PDVEP LV AM SLP  QRT++WL H C WT+AE A  MD++ S V TH++RG  +LR+ LGV N H
Sbjct:    1 MTDEMTFDEFVAAATPRLHRALIGSVGVDRLDDAVAEAVAWAFEHQAEISAMNNPVGYMYRVGVSKVRRRRRLRLFRDVPVTIPDVEPGLVGAMLSLPESQRTAVWLAHGCHWTHAEIAEVMDLAPSTVATHVSRGMHSLRKALGVINAH 150          
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A7X7HQZ0_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HQZ0_9ACTN)

HSP 1 Score: 129 bits (323), Expect = 3.430e-35
Identity = 74/147 (50.34%), Postives = 89/147 (60.54%), Query Frame = 1
Query:    4 SDEFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGVNTHE 444
            S  FE FV   +P LRRA      ID   DA AEALA+AWEHWD V+ M NP GYL+RV  SR+R R  G L   +P  A   EP LV A+  L  +QRT++ LVH CGWT+ E A AM I    VGTH++R    LR  LGV++ E
Sbjct:   13 SGGFEAFVVDAEPRLRRAFTLLRGIDAGRDATAEALAWAWEHWDFVQEMTNPVGYLYRVGSSRTRRRRAG-LAAVEPTEAHRFEPGLVPALERLSEKQRTAVVLVHGCGWTHQEVADAMGIRRPTVGTHVSRAMDHLRRELGVDSGE 158          
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A7Y2NAY6_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2NAY6_9ACTN)

HSP 1 Score: 128 bits (322), Expect = 3.630e-35
Identity = 68/147 (46.26%), Postives = 93/147 (63.27%), Query Frame = 1
Query:    4 SDEFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPDPDR-APDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGVNTH 441
            S+ F  FV +V+P LR AL   +  +   +A AEALAYAWEHW R+ AM+N +GYL+RV +SR R R    +  P P R  P+VEP L +A+  L  +QR ++ +VHA  W+  EAA  + +S S + THL RG A LR+ LGV +H
Sbjct:    8 SESFTIFVKEVEPRLRHALVASLGQEEGREATAEALAYAWEHWGRLEAMENAAGYLYRVGRSRGRPRRSRPVFDPVPSRHLPEVEPGLPDALSGLSEKQRVAVVMVHAYEWSRGEAAEVLGVSVSTLDTHLQRGLAKLRDGLGVQSH 154          
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Match: A0A7X7D752_9ACTN (HTH luxR-type domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D752_9ACTN)

HSP 1 Score: 128 bits (322), Expect = 3.740e-35
Identity = 72/147 (48.98%), Postives = 91/147 (61.90%), Query Frame = 1
Query:    7 DEFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAMDNPSGYLFRVAQSRSRSRMDGSLPPPD-----PDRAPDVEPRLVEAMRSLPTQQRTSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGV 432
            + F  FV   +P LRRAL          DAVAEALA+AWE+W++V  MDNP GYL+RV  SR+R+R   ++P P+        A   EP L  A+  L  +QRT + LVH CGW+Y E AAA+D+S SAVGTH+AR    LR  LGV
Sbjct:    8 EAFSVFVTDAEPRLRRALCAMRGPVAGRDAVAEALAWAWENWEQVTEMDNPVGYLYRVGASRTRTRRLEAVPVPEVAVPGTGHASAFEPGLAPALARLSDRQRTVVVLVHGCGWSYTEVAAALDLSKSAVGTHVARALEQLRSDLGV 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12059.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0QJ81_9ACTN4.550e-5458.87Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A349B171_9ACTN1.170e-4957.75Sigma70_r4_2 domain-containing protein n=1 Tax=Aci... [more]
A0A538HGZ9_9ACTN3.350e-4758.87Sigma70_r4_2 domain-containing protein n=2 Tax=Act... [more]
A0A520XX61_9ACTN1.620e-4555.00Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A848UHM3_9ACTN3.850e-4352.48Sigma70_r4_2 domain-containing protein n=1 Tax=Ilu... [more]
A0A7K1BC28_9ACTN4.080e-4153.90Sigma70_r4_2 domain-containing protein n=2 Tax=roo... [more]
A0A2E0RSA1_9ACTN3.010e-3850.67Sigma70_r4_2 domain-containing protein n=1 Tax=Aci... [more]
A0A7X7HQZ0_9ACTN3.430e-3550.34Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7Y2NAY6_9ACTN3.630e-3546.26Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7X7D752_9ACTN3.740e-3548.98HTH luxR-type domain-containing protein n=1 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12059contigP-wetherbeei_contig12059:229..675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog479433.Caci_8916
PFAMsSigma70_r2,Sigma70_r4_2
Model size447
Max annot lvl201174|Actinobacteria
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
Exons1
Evalue8e-12
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria,2GKDD@201174|Actinobacteria
DescriptionBelongs to the sigma-70 factor family. ECF subfamily
Cds size447
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185936.477114-CDS-P-wetherbeei_contig12059:228..6751683185936.477114-CDS-P-wetherbeei_contig12059:228..675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12059 229..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12059.1.1prot_P-wetherbeei_contig12059.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12059 229..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12059.1.1

>prot_P-wetherbeei_contig12059.1.1 ID=prot_P-wetherbeei_contig12059.1.1|Name=mRNA_P-wetherbeei_contig12059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MSDEFETFVHQVDPSLRRALAGHMPIDRVGDAVAEALAYAWEHWDRVRAM
DNPSGYLFRVAQSRSRSRMDGSLPPPDPDRAPDVEPRLVEAMRSLPTQQR
TSIWLVHACGWTYAEAAAAMDISASAVGTHLARGTAALRERLGVNTHE*
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mRNA from alignment at P-wetherbeei_contig12059:229..675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12059.1.1 ID=mRNA_P-wetherbeei_contig12059.1.1|Name=mRNA_P-wetherbeei_contig12059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig12059:229..675+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGATGAGTTCGAGACGTTCGTGCATCAGGTCGACCCATCGTTGCG GCGCGCACTCGCCGGGCACATGCCCATCGATCGAGTCGGTGACGCCGTCG CCGAGGCGCTCGCCTACGCATGGGAGCACTGGGATCGAGTGCGTGCAATG GACAACCCCTCCGGCTACCTGTTCCGCGTGGCCCAGAGCCGATCTCGCTC ACGAATGGACGGCTCGCTCCCTCCGCCGGATCCCGATCGGGCACCCGACG TCGAGCCACGACTCGTCGAGGCGATGCGATCGCTGCCGACGCAGCAACGC ACGTCGATCTGGCTCGTGCACGCCTGCGGCTGGACGTACGCCGAAGCCGC CGCGGCCATGGACATCTCGGCGTCCGCCGTCGGCACGCACCTCGCACGCG GCACCGCCGCGCTGCGCGAACGGCTCGGAGTGAACACGCATGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12059:229..675+

>mRNA_P-wetherbeei_contig12059.1.1 ID=mRNA_P-wetherbeei_contig12059.1.1|Name=mRNA_P-wetherbeei_contig12059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig12059:229..675+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGATGAGTTCGAGACGTTCGTGCATCAGGTCGACCCATCGTTGCG
GCGCGCACTCGCCGGGCACATGCCCATCGATCGAGTCGGTGACGCCGTCG
CCGAGGCGCTCGCCTACGCATGGGAGCACTGGGATCGAGTGCGTGCAATG
GACAACCCCTCCGGCTACCTGTTCCGCGTGGCCCAGAGCCGATCTCGCTC
ACGAATGGACGGCTCGCTCCCTCCGCCGGATCCCGATCGGGCACCCGACG
TCGAGCCACGACTCGTCGAGGCGATGCGATCGCTGCCGACGCAGCAACGC
ACGTCGATCTGGCTCGTGCACGCCTGCGGCTGGACGTACGCCGAAGCCGC
CGCGGCCATGGACATCTCGGCGTCCGCCGTCGGCACGCACCTCGCACGCG
GCACCGCCGCGCTGCGCGAACGGCTCGGAGTGAACACGCATGAGTGA
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