mRNA_P-wetherbeei_contig11985.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11985.1.1
Unique NamemRNA_P-wetherbeei_contig11985.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Match: A0A836CJ32_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ32_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.740e-24
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    7 EITSELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFILWGLAFILLGAVALVIYFAASK 213
            EIT+ELGRNRE I + H KVREVS MT +ARRLVH+MSKREVQ +FILWG+A +LL AV LVIYFA  K
Sbjct:  157 EITTELGRNRETIQSAHGKVREVSAMTANARRLVHNMSKREVQQRFILWGIALLLLLAVILVIYFAVKK 225          
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Match: A0A7S2V424_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V424_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.750e-22
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 ALEITSELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFILWGLAFILLGAVALVIYF 201
            ALEIT ELGRNREKI +VH KVREV  MT +ARR++HSM+KREVQ KFI++G+A +LL A+ +VIY+
Sbjct:  169 ALEITQELGRNREKIESVHSKVREVGSMTHTARRIIHSMNKREVQQKFIIYGVALVLLAAICVVIYY 235          
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Match: D7FI03_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI03_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.370e-15
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 1
Query:   19 ELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFILWGLAFIL-LGAVALVIY 198
            ELGRNREKI  VHDKVR+VS MT SARRLVH+M++REVQ + I++G+  +L +GA+A V Y
Sbjct:  158 ELGRNREKIGEVHDKVRDVSGMTTSARRLVHNMNRREVQQRCIMYGIGLVLVIGAIAAVYY 218          
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Match: A0A6U0QSX3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0QSX3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.740e-14
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 ALEITSELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFILWGLAFILLGAVALVI 195
            ALEITSELGRNRE I++ H +VR+VS +T  ARR+V +MS+REVQ K  ++ + FILL  + ++I
Sbjct:  130 ALEITSELGRNRETISSAHSRVRDVSGLTNQARRIVQNMSRREVQQKLAIYVVCFILLVVLIIMI 194          
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Match: K0R0D9_THAOC (V-SNARE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0D9_THAOC)

HSP 1 Score: 72.0 bits (175), Expect = 1.210e-13
Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 ALEITSELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFILWGLAFILLGAVALVIY 198
            ALEIT ELGR+RE I++ H +VR+V+ MT  ARR+V SMS+REVQ K IL+G+A  ++    ++IY
Sbjct:  158 ALEITEELGRHRETISSAHGRVRQVTGMTNRARRIVQSMSRREVQQKLILYGVAGTIMIVFLMLIY 223          
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Match: A0A6U3TNS8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TNS8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.980e-13
Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 ALEITSELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFILWGLAFILLGAVALVIY 198
            ALEIT ELGR+RE I++ H +VR+V+ MT  ARR+V SMS+REVQ K IL+G+A  ++    ++IY
Sbjct:  168 ALEITEELGRHRETISSAHGRVRQVTGMTNRARRIVQSMSRREVQQKLILYGVAGTIVLVFLMLIY 233          
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Match: A0A1Z5KPD8_FISSO (Vesicle transport through interaction with t-SNAREs 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPD8_FISSO)

HSP 1 Score: 68.6 bits (166), Expect = 1.690e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 ALEITSELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFILWGLAFILLGAVALVIY 198
            ALEIT ELG NRE +   H +VREVS MTG ARR++ SMS+R+VQ K I++G+A  L+ A   +++
Sbjct:  132 ALEITEELGNNRETLLNAHGRVREVSGMTGRARRILTSMSRRQVQQKMIVYGIAIGLVLAFLFLLW 197          
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Match: A0A6S8XXA7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XXA7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.260e-12
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 ALEITSELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFILWGLAFILLGAVALVIY 198
            A+EIT+ELGRNRE I + H +VREVS +T  ARR+V +MS+REVQ K +L+ +  ++   + ++I+
Sbjct:  153 AMEITTELGRNRETIQSAHGRVREVSGLTNRARRIVQNMSRREVQQKLVLYMVLAVIFIVLVIIIF 218          
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Match: A0A7S4MHQ9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MHQ9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.400e-12
Identity = 31/65 (47.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 ALEITSELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFILWGLAFILLGAVALVI 195
            ALEIT ELGRNREKI + H +V++VS +T  ARR+V SM++REVQ K  ++ ++ +L+  + +++
Sbjct:   48 ALEITEELGRNREKIESAHGRVKDVSGLTNRARRIVQSMNRREVQQKLAMYVVSAMLIVVLIVIL 112          
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Match: A0A7S3P7W6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7W6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.780e-12
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 ALEITSELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFILWGLA 162
            ALEIT ELG+NREK+ + H +VREVS +TG ARR++ SMS+R VQ K IL+ +A
Sbjct:  133 ALEITEELGQNREKLISAHGRVREVSGLTGRARRILTSMSQRAVQQKMILYAVA 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ32_9STRA1.740e-2472.46Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S2V424_9STRA2.750e-2267.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FI03_ECTSI1.370e-1563.93Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A6U0QSX3_9STRA3.740e-1455.38Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
K0R0D9_THAOC1.210e-1354.55V-SNARE domain-containing protein n=1 Tax=Thalassi... [more]
A0A6U3TNS8_9STRA1.980e-1354.55Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1Z5KPD8_FISSO1.690e-1253.03Vesicle transport through interaction with t-SNARE... [more]
A0A6S8XXA7_9STRA2.260e-1248.48Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4MHQ9_9STRA3.400e-1247.69Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3P7W6_9STRA6.780e-1261.11Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11985contigP-wetherbeei_contig11985:947..2057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FI03
Preferred nameVTI1A
PFAMsV-SNARE,V-SNARE_C
Model size219
Max annot lvl2759|Eukaryota
KEGG koko:K08493,ko:K08494,ko:K18749
KEGG Pathwayko04130,ko04138,map04130,map04138
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0002576,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007034,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008200,GO:0008283,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016247,GO:0016248,GO:0016482,GO:0017081,GO:0019869,GO:0022406,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030173,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031091,GO:0031093,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031901,GO:0031902,GO:0031974,GO:0031982,GO:0031983,GO:0031984,GO:0032010,GO:0032501,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0034613,GO:0034774,GO:0036477,GO:0042144,GO:0042147,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043679,GO:0044237,GO:0044248,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045324,GO:0045335,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048280,GO:0048284,GO:0048471,GO:0050789,GO:0050879,GO:0050881,GO:0050882,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0055037,GO:0055038,GO:0060205,GO:0060341,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070382,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090161,GO:0090174,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0099106,GO:0099503,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1903076,GO:1903827,GO:1904375,GO:1905475
Exons2
Evalue2.24e-16
EggNOG OGsKOG1666@1|root,KOG1666@2759|Eukaryota
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-12_006560.1
Descriptionvesicle fusion with Golgi apparatus
Cds size219
COG categoryS
BRITEko00000,ko00001,ko03019,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.9582686-CDS-P-wetherbeei_contig11985:946..11021683185933.9582686-CDS-P-wetherbeei_contig11985:946..1102Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11985 947..1102 -
1683185933.9704087-CDS-P-wetherbeei_contig11985:1994..20571683185933.9704087-CDS-P-wetherbeei_contig11985:1994..2057Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11985 1995..2057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11985.1.1prot_P-wetherbeei_contig11985.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11985 947..2057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11985.1.1

>prot_P-wetherbeei_contig11985.1.1 ID=prot_P-wetherbeei_contig11985.1.1|Name=mRNA_P-wetherbeei_contig11985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
ALEITSELGRNREKITAVHDKVREVSVMTGSARRLVHSMSKREVQHKFIL
WGLAFILLGAVALVIYFAASKN*
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mRNA from alignment at P-wetherbeei_contig11985:947..2057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11985.1.1 ID=mRNA_P-wetherbeei_contig11985.1.1|Name=mRNA_P-wetherbeei_contig11985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1111bp|location=Sequence derived from alignment at P-wetherbeei_contig11985:947..2057- (Phaeothamnion wetherbeei SAG_119_79)
GCGTTGGAGATCACGTCGGAGCTCGGAAGGAATCGGGAAAAGATCACCGC CGTGCACGACAAGGTGCGTCTGCATCTGCTGTAAGGTTTTGGTCCTTTGA ATTGCTCCGGAAGTTAGAGGGTAGAAACGCCTCGTTCGTGTTTGGGGGTG TCTTTCTTGCCGTGGGTGCGTCTTTGCGTCATCGTTCAGACGCTCGGTTT TTCGTAGGCGGTTGTGTTGCAATAGCTCAGTCGGTAAAACCTTGCCGCCT GCCGCCGGTTGCCCATTTGGTAGGTTCGAGAGATGAACACCGAGCTCGAT CGAGCGGAGGACATTGTAACGCGCATGAGCAAGTGGTGGCGGAACCTCTG ACGGGCGCTTCCTGTCCTTCCACGATCCCCTTTCTTTCCCGATGGCAATG GCCCGTTCCGTCGAACCGCTTCGTTCAATGCCGGCTGTCGCGGTGGCGTC TTCTGTATGCCGGCTGTCGCGGTGGCGTCTTCTGTATGCCGCGTCTCGAG TCGCTCCAACACCTCACGTCTGGCCCGGTTCGCTCACTGGCGTCGACCTT TCCACTGTGATTGGCGGTCGGTGGTGTCGCCGCTGGCTGCGGATCGTCAC GTGGCTCCAATTTGCGCTGCGCGGTTCCGTCTACCGGCTCCGCGGGGCTT TTCCTGCTTTCGGCCCCTGCCGTGGTCGGACCTCCTACTGCGATGTTGTG TTTCCGCTGGCGGCCACCGATGCCGGTCATTGCCACTCCCCGGCTGCTGC TGGCTGCCGCCATGCATTGGCTGGGTGCTGCCTGCTGCCTGCTCTGCTGG CTGCTGCCTGCTCTGCTGGCTACTGCCCGCTCTGCTGGCTGCTGCCTGCT CGACTGGACCTGCTGCCTGCTCGACTGGACCTGCTGCTGGCTGTCACCGG TCACCTGTCGCTGCCTGCCCTGCTGGCTGCTCTCACCTCCATCATGCGAC CTCAGGTGCGGGAGGTATCGGTGATGACGGGCAGCGCGCGGCGGCTCGTG CACTCGATGAGCAAGCGAGAGGTCCAGCACAAGTTCATCCTGTGGGGGCT CGCCTTTATCCTGCTGGGCGCCGTCGCCCTTGTCATATATTTCGCCGCCT CGAAGAATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11985:947..2057-

>mRNA_P-wetherbeei_contig11985.1.1 ID=mRNA_P-wetherbeei_contig11985.1.1|Name=mRNA_P-wetherbeei_contig11985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig11985:947..2057- (Phaeothamnion wetherbeei SAG_119_79)
GCGTTGGAGATCACGTCGGAGCTCGGAAGGAATCGGGAAAAGATCACCGC
CGTGCACGACAAGGTGCGGGAGGTATCGGTGATGACGGGCAGCGCGCGGC
GGCTCGTGCACTCGATGAGCAAGCGAGAGGTCCAGCACAAGTTCATCCTG
TGGGGGCTCGCCTTTATCCTGCTGGGCGCCGTCGCCCTTGTCATATATTT
CGCCGCCTCGAAGAATTGA
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