mRNA_P-wetherbeei_contig11935.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11935.1.1
Unique NamemRNA_P-wetherbeei_contig11935.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Match: A0A835YT86_9STRA (Intraflagellar transport complex B protein 46 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT86_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.470e-25
Identity = 50/89 (56.18%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 QVHYKRSMPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLDVPVHDGAGGGGLIESLHLLFTLYMEFKANQHF 267
            QVHYKRSMPD+D LMEVWP E E LLS      A  P P +E+SL+EY +  C ++D+PV++      +IESLHLLFT+Y EFK N HF
Sbjct:  156 QVHYKRSMPDVDKLMEVWPEEFEQLLS-----TAQLPGPELEMSLEEYAKTICAIMDIPVYEN-----IIESLHLLFTVYQEFKNNAHF 234          
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Match: G0R2Y9_ICHMG (Uncharacterized protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R2Y9_ICHMG)

HSP 1 Score: 103 bits (258), Expect = 5.990e-25
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    4 VHYKRSMPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLDVPVHDGAGGGGLIESLHLLFTLYMEFKANQHFQ 270
            V Y + MPDIDTLM+VWP E+ED LS         P   ++L+L +Y +LAC +LD+PVH+ +    +IESLH+LFTLY EFKANQHFQ
Sbjct:  212 VSYTKQMPDIDTLMQVWPQEIEDALSN-----FKIPSEELDLNLMDYSKLACAILDIPVHNTSNNTNVIESLHVLFTLYSEFKANQHFQ 295          
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Match: U3LNS5_9TRYP (Uncharacterized protein (Fragment) n=1 Tax=Paratrypanosoma confusum TaxID=1470209 RepID=U3LNS5_9TRYP)

HSP 1 Score: 100 bits (250), Expect = 4.140e-23
Identity = 45/89 (50.56%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    4 VHYKRSMPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLDVPVHDGAGGGGLIESLHLLFTLYMEFKANQHFQ 270
            V+Y   MPDI+TL++VWP E+E++L+    +  AFPPP I+L +++Y +L C +LD+P H+      LI+SLH++FTLY EF+ANQHFQ
Sbjct:  371 VNYHTPMPDIETLLQVWPPEVEEILN----SDIAFPPPQIDLDIEQYIKLLCAMLDIPTHNS-----LIDSLHVMFTLYQEFRANQHFQ 450          
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Match: A0A0P1ABA4_PLAHL (Intraflagellar transport protein 46 homolog isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABA4_PLAHL)

HSP 1 Score: 100 bits (248), Expect = 9.380e-23
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 QVHYKRSMPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLDVPVHDGAGGGGLIESLHLLFTLYMEFKANQHF 267
            QVHY ++MPDI++LM+VWP E EDLLS       A P   ++LS+++Y R+ C LLD+P+H       + ESLH+LFTLY+EF +NQHF
Sbjct:  402 QVHYTKTMPDIESLMQVWPAEFEDLLS-----KTALPSADLDLSVEQYARVICALLDIPIHKN-----VYESLHVLFTLYLEFSSNQHF 480          
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Match: A0A7S3I982_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3I982_9CILI)

HSP 1 Score: 97.8 bits (242), Expect = 1.900e-22
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    4 VHYKRSMPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLDVPVHDGAGGGGLIESLHLLFTLYMEFKANQHFQ 270
            V+Y + MPDIDTLM+VW  ++E+LL+         P P IE+ L  Y RL C +LD+PVH+      +IESLHLLFTLY +FK+NQHF+
Sbjct:  246 VNYSKPMPDIDTLMDVWHPQVEELLNN-----IELPSPDIEIDLAGYVRLVCAILDIPVHNLPNNKSMIESLHLLFTLYSDFKSNQHFR 329          
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Match: A0A7S2V5L8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5L8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.400e-22
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    1 QVHYKRSMPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLDVPVHDGAGGGGLIESLHLLFTLYMEFKANQHF 267
            QV+YK++MPDI+ LMEVWP ELE++L+         P   ++LSL+EY R+ C +LD+PV++ +    ++ESLH+LFTLYMEFK NQHF
Sbjct:  184 QVNYKQNMPDIEKLMEVWPDELEEMLN-----TIKLPGVDLDLSLEEYIRVICSILDIPVYNES----VVESLHVLFTLYMEFKNNQHF 263          
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Match: Q23KH7_TETTS (Intraflagellar transport complex B protein 46 carboxy-terminal protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q23KH7_TETTS)

HSP 1 Score: 97.1 bits (240), Expect = 3.950e-22
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    4 VHYKRSMPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLDVPVHDGAGGGGLIESLHLLFTLYMEFKANQHFQ 270
            V Y + MP+ID LM+ WP E+E++L          P   ++ +L ++C+LAC +LD+PVHD      +IESLH+LFTLY EFK+NQHFQ
Sbjct:  243 VSYTKPMPEIDELMQEWPQEIEEILQH-----LKIPSEELDFNLSDFCKLACAILDIPVHDQPNESNVIESLHVLFTLYSEFKSNQHFQ 326          
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Match: A0A3F2RRA7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRA7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.040e-22
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 QVHYKRSMPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLDVPVHDGAGGGGLIESLHLLFTLYMEFKANQHF 267
            QVHY ++MPDI++LM+VWP E EDLLS         P   ++++L++Y R+ C LLD+PVH       + ESLH+LFTLY+EF++NQHF
Sbjct:  326 QVHYTKTMPDIESLMQVWPEEFEDLLS-----KTTLPSADLDMALEQYVRVICALLDIPVHKN-----VYESLHVLFTLYLEFRSNQHF 404          
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Match: A0A0N1HW27_LEPSE (Uncharacterized protein n=1 Tax=Leptomonas seymouri TaxID=5684 RepID=A0A0N1HW27_LEPSE)

HSP 1 Score: 97.8 bits (242), Expect = 5.260e-22
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    4 VHYKRSMPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLDVPVHDGAGGGGLIESLHLLFTLYMEFKANQHFQ 270
            V+Y+R MPDI+TLM+VWP + E++L+    +  AFPP  I+L LD+Y R  C +LD+P +       LI+SLH++FTLY EF+ANQHFQ
Sbjct:  364 VNYQRPMPDIETLMQVWPQQFEEVLN----SDVAFPPSHIDLDLDQYVRTLCTVLDIPTYSS-----LIDSLHVMFTLYEEFRANQHFQ 443          
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Match: A0A1V9Z9E3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z9E3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.400e-22
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 QVHYKRSMPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLDVPVHDGAGGGGLIESLHLLFTLYMEFKANQHF 267
            QVHY +SMPDI+TLM+VWP E EDLLS         P   + +SL++Y R+ C +LD+PV+       + ESLH+LFTL++EF++NQHF
Sbjct:  168 QVHYSKSMPDIETLMQVWPEEFEDLLS-----KIQLPNADLNVSLEQYTRIICAILDIPVYKN-----VYESLHVLFTLFLEFRSNQHF 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11935.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YT86_9STRA1.470e-2556.18Intraflagellar transport complex B protein 46 n=1 ... [more]
G0R2Y9_ICHMG5.990e-2555.06Uncharacterized protein n=1 Tax=Ichthyophthirius m... [more]
U3LNS5_9TRYP4.140e-2350.56Uncharacterized protein (Fragment) n=1 Tax=Paratry... [more]
A0A0P1ABA4_PLAHL9.380e-2351.69Intraflagellar transport protein 46 homolog isofor... [more]
A0A7S3I982_9CILI1.900e-2251.69Hypothetical protein n=1 Tax=Fabrea salina TaxID=3... [more]
A0A7S2V5L8_9STRA2.400e-2252.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
Q23KH7_TETTS3.950e-2248.31Intraflagellar transport complex B protein 46 carb... [more]
A0A3F2RRA7_9STRA4.040e-2250.56Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A0N1HW27_LEPSE5.260e-2251.69Uncharacterized protein n=1 Tax=Leptomonas seymour... [more]
A0A1V9Z9E3_9STRA5.400e-2250.56Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11935contigP-wetherbeei_contig11935:397..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5932.XP_004027510.1
PFAMsIFT46_B_C
Model size270
Max annot lvl5878|Ciliophora
KEGG koko:K19682
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.26e-24
EggNOG OGs2CDGQ@1|root,2QPNA@2759|Eukaryota,3ZBD5@5878|Ciliophora
DescriptionIntraflagellar transport complex B protein 46 C terminal
Cds size249
COG categoryS
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185932.1904635-UTR-P-wetherbeei_contig11935:396..4171683185932.1904635-UTR-P-wetherbeei_contig11935:396..417Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11935 397..417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185932.2015433-CDS-P-wetherbeei_contig11935:417..6661683185932.2015433-CDS-P-wetherbeei_contig11935:417..666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11935 418..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11935.1.1prot_P-wetherbeei_contig11935.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11935 418..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11935.1.1

>prot_P-wetherbeei_contig11935.1.1 ID=prot_P-wetherbeei_contig11935.1.1|Name=mRNA_P-wetherbeei_contig11935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MPDIDTLMEVWPVELEDLLSGPGGAAAAFPPPSIELSLDEYCRLACVLLD
VPVHDGAGGGGLIESLHLLFTLYMEFKANQHFQ
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mRNA from alignment at P-wetherbeei_contig11935:397..666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11935.1.1 ID=mRNA_P-wetherbeei_contig11935.1.1|Name=mRNA_P-wetherbeei_contig11935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig11935:397..666+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGCACTACAAGCGCAGCATGCCCGACATTGACACCCTCATGGAGGT CTGGCCCGTCGAGCTCGAGGACCTCTTGAGCGGGCCCGGCGGCGCCGCGG CGGCCTTCCCGCCGCCGTCCATCGAGCTCTCGCTGGACGAGTACTGCCGG CTAGCGTGTGTGCTGCTGGACGTGCCCGTGCATGATGGCGCCGGCGGCGG CGGCCTCATCGAGTCGCTGCATTTGCTTTTCACGCTCTACATGGAGTTCA AGGCCAACCAGCACTTCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11935:397..666+

>mRNA_P-wetherbeei_contig11935.1.1 ID=mRNA_P-wetherbeei_contig11935.1.1|Name=mRNA_P-wetherbeei_contig11935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig11935:397..666+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGACATTGACACCCTCATGGAGGTCTGGCCCGTCGAGCTCGAGGA
CCTCTTGAGCGGGCCCGGCGGCGCCGCGGCGGCCTTCCCGCCGCCGTCCA
TCGAGCTCTCGCTGGACGAGTACTGCCGGCTAGCGTGTGTGCTGCTGGAC
GTGCCCGTGCATGATGGCGCCGGCGGCGGCGGCCTCATCGAGTCGCTGCA
TTTGCTTTTCACGCTCTACATGGAGTTCAAGGCCAACCAGCACTTCCAG
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