mRNA_P-wetherbeei_contig11921.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11921.1.1
Unique NamemRNA_P-wetherbeei_contig11921.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Match: A0A1E3Z7B1_9BORD (HTH marR-type domain-containing protein n=7 Tax=Burkholderiales TaxID=80840 RepID=A0A1E3Z7B1_9BORD)

HSP 1 Score: 139 bits (349), Expect = 1.260e-39
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 SMQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRMLDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLKDFKADELHMLMGFLKRMIAN 363
            S+QR  +  M  LDLTAMQWGPL+L+A GR  TAAELAR    DTGAMTRMLDRLE+KGL+ R RSA DRRV++LELT EG +   Q+PQ+L D ++LH +DF   E+  L   L+RM AN
Sbjct:   37 SLQRAVDAEMTALDLTAMQWGPLMLLAMGRGETAAELARSACSDTGAMTRMLDRLESKGLIRRVRSAEDRRVIKLELTEEGVRATEQVPQRLHDAVDLHTRDFSEQEVQQLKSLLRRMAAN 157          
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Match: A0A208Y7V0_9BURK (MarR family transcriptional regulator n=1 Tax=Pigmentiphaga sp. NML080357 TaxID=2008675 RepID=A0A208Y7V0_9BURK)

HSP 1 Score: 138 bits (347), Expect = 2.460e-39
Identity = 73/121 (60.33%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 SMQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRMLDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLKDFKADELHMLMGFLKRMIAN 363
            S+QR  +  M  LDLTAMQWGPL+L+A GR  TAAELAR    DTGAMTRMLDRLE+KGL+ R RSA DRRV++LELT EG +   QIPQ+L   ++LH + F  +EL  L   L+RMIAN
Sbjct:   36 SLQRAVDAEMMALDLTAMQWGPLMLLAMGRGETAAELARSTCTDTGAMTRMLDRLESKGLIRRVRSAEDRRVIKLELTEEGVRATEQIPQRLHHAVDLHTRGFSDEELRQLKSLLRRMIAN 156          
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Match: A0A2V1JZY7_9BURK (MarR family transcriptional regulator n=2 Tax=Alcaligenaceae TaxID=506 RepID=A0A2V1JZY7_9BURK)

HSP 1 Score: 134 bits (337), Expect = 8.100e-38
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    1 SMQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRMLDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLKDFKADELHMLMGFLKRMIAN 363
            SM R  E+ M PLDLTAMQW PL+++  G+A TAAELAR +D+DTGAMTR LDRLE KGL+ R RS  DRRVV+LELT  G +VA+Q P  L  +L+ HL+DFKA+E+  L  +L+RM+ N
Sbjct:   35 SMSRIIERDMVPLDLTAMQWRPLMMVYSGKADTAAELARVLDVDTGAMTRTLDRLEGKGLLRRERSQDDRRVVRLELTDAGREVAAQCPAVLGRMLDHHLRDFKAEEVTALRAYLQRMLVN 155          
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Match: A0A3P4AZF7_9BURK (Multiple antibiotic resistance protein MarR n=1 Tax=Pigmentiphaga humi TaxID=2478468 RepID=A0A3P4AZF7_9BURK)

HSP 1 Score: 132 bits (333), Expect = 3.370e-37
Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 SMQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRMLDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLKDFKADELHMLMGFLKRMIAN 363
            S+QR  +  M  LDLTAMQWGPL+ +A GR  TAAELAR    DTGA TRMLDRLE+KGL+ R RSA DRRV++LELT EG + + Q+P++L  V+N H + F A+E+  L   L+RMIAN
Sbjct:   37 SLQRTVDAEMTVLDLTAMQWGPLMQLALGRCETAAELARCACSDTGATTRMLDRLESKGLIRRVRSAQDRRVIKLELTEEGTRASEQVPERLIHVMNQHTRGFTAEEIEQLKSLLRRMIAN 157          
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Match: A0A0D6H1P0_ALCXX (MarR family transcriptional regulator n=28 Tax=Alcaligenaceae TaxID=506 RepID=A0A0D6H1P0_ALCXX)

HSP 1 Score: 132 bits (333), Expect = 3.790e-37
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 SMQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRMLDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLKDFKADELHMLMGFLKRMIAN 363
            S+ R  ++ M PLDLTAMQW P+ +++ GRA T AELAR   +DTGAMTR LDRLEAKGL+ RARS  DRRVV++ELT  G   A +IP  +A VLN HL+ F ADE+  LM FL+RMIAN
Sbjct:   38 SLNRMLDQEMAPLDLTAMQWRPIAMVSLGRADTPAELARLNGVDTGAMTRTLDRLEAKGLLRRARSQQDRRVVKIELTELGEAKAREIPPNIAHVLNHHLRGFSADEVTQLMHFLRRMIAN 158          
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Match: A0A261TFD8_9BORD (MarR family transcriptional regulator n=3 Tax=Bordetella TaxID=517 RepID=A0A261TFD8_9BORD)

HSP 1 Score: 132 bits (332), Expect = 6.040e-37
Identity = 72/121 (59.50%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    1 SMQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRMLDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLKDFKADELHMLMGFLKRMIAN 363
            SM R  ++ M PLDLTAMQW PL ++  GRA T AELAR + +DTGAMTR LDRLEAKGL+ R RS  DRRV++LELT +G + A +IPQ +A VLNLHL+ F ADE       L RM+AN
Sbjct:   40 SMNRMLDQEMAPLDLTAMQWRPLAMIFRGRADTPAELARLIGVDTGAMTRTLDRLEAKGLLRRVRSQEDRRVIKLELTDDGQEKAREIPQYIAKVLNLHLRGFSADETAQARHLLMRMLAN 160          
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Match: A0A6S7F1X8_9BURK (Transcriptional regulator SlyA n=1 Tax=Achromobacter anxifer TaxID=1287737 RepID=A0A6S7F1X8_9BURK)

HSP 1 Score: 131 bits (330), Expect = 1.150e-36
Identity = 72/121 (59.50%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    1 SMQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRMLDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLKDFKADELHMLMGFLKRMIAN 363
            SM R  ++ M PLDLTAMQW P++L+ +GRA T AELAR   +DTGAMTR LDRLEAKGL+ R R   DRRVV++ELT  G   A +IP  +A VLN HL+ F  DE+  LM FL+RMIAN
Sbjct:   38 SMNRMLDQEMAPLDLTAMQWRPIILLFKGRADTPAELARLTGMDTGAMTRALDRLEAKGLLRRTRCQEDRRVVKIELTELGEAKAREIPPNIARVLNYHLRGFSTDEVAQLMHFLRRMIAN 158          
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Match: A0A5C0AY27_9BURK (MarR family transcriptional regulator n=1 Tax=Pigmentiphaga aceris TaxID=1940612 RepID=A0A5C0AY27_9BURK)

HSP 1 Score: 130 bits (327), Expect = 2.740e-36
Identity = 71/121 (58.68%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 SMQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRMLDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLKDFKADELHMLMGFLKRMIAN 363
            SMQR  +  + P+DLTAMQW PLL MA G+A TAAELAR + +DTGAMTRMLDRLE KGL+ R+RSA DRRV++LELT EG   A+QIP  L  V  +H   F  +E  ++ G L+RM+AN
Sbjct:   34 SMQRAIDIEVAPMDLTAMQWTPLLRMAAGQADTAAELARVVGMDTGAMTRMLDRLEHKGLIRRSRSAEDRRVIKLELTEEGRHKANQIPPLLLKVTEMHFAGFDENEREIMKGLLRRMLAN 154          
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Match: A0A448C0L1_9BURK (Multiple antibiotic resistance protein marR n=7 Tax=Achromobacter TaxID=222 RepID=A0A448C0L1_9BURK)

HSP 1 Score: 130 bits (326), Expect = 4.630e-36
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 SMQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRMLDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLKDFKADELHMLMGFLKRMIAN 363
            S+ R  ++ M PLDLTAMQW PL ++  GRA T AELAR  D+DTGAMTR LDRLEAKGL+ R+RS  DRRVV++ELT  G   A +IP  +A  LN HL+ F ADE+  LM F++RMIAN
Sbjct:   38 SLTRMLDQEMAPLDLTAMQWRPLAMVFLGRADTPAELARLNDMDTGAMTRALDRLEAKGLLRRSRSLEDRRVVKIELTELGEAKAREIPPSIARALNHHLRGFSADEVTQLMHFMRRMIAN 158          
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Match: UPI001F461444 (MarR family transcriptional regulator n=1 Tax=Achromobacter aestuarii TaxID=2511204 RepID=UPI001F461444)

HSP 1 Score: 128 bits (322), Expect = 9.260e-36
Identity = 68/121 (56.20%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 SMQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRMLDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLKDFKADELHMLMGFLKRMIAN 363
            S+ R  ++ M PL LTAMQW P+  +A+G AST+ ELAR + +D+GAMTR LDRLEAKGL+ R RS  DRRVV +ELTAEG + A +IP ++A  LN +L+ F +DE+ ML  FL+RM+AN
Sbjct:    8 SLNRVLDQDMAPLGLTAMQWRPVACLAKGHASTSVELARILAVDSGAMTRTLDRLEAKGLLVRTRSKEDRRVVDIELTAEGQRTAKEIPARIARALNHYLRGFSSDEVDMLSHFLQRMLAN 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11921.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E3Z7B1_9BORD1.260e-3959.50HTH marR-type domain-containing protein n=7 Tax=Bu... [more]
A0A208Y7V0_9BURK2.460e-3960.33MarR family transcriptional regulator n=1 Tax=Pigm... [more]
A0A2V1JZY7_9BURK8.100e-3859.50MarR family transcriptional regulator n=2 Tax=Alca... [more]
A0A3P4AZF7_9BURK3.370e-3757.85Multiple antibiotic resistance protein MarR n=1 Ta... [more]
A0A0D6H1P0_ALCXX3.790e-3760.33MarR family transcriptional regulator n=28 Tax=Alc... [more]
A0A261TFD8_9BORD6.040e-3759.50MarR family transcriptional regulator n=3 Tax=Bord... [more]
A0A6S7F1X8_9BURK1.150e-3659.50Transcriptional regulator SlyA n=1 Tax=Achromobact... [more]
A0A5C0AY27_9BURK2.740e-3658.68MarR family transcriptional regulator n=1 Tax=Pigm... [more]
A0A448C0L1_9BURK4.630e-3659.50Multiple antibiotic resistance protein marR n=7 Ta... [more]
UPI001F4614449.260e-3656.20MarR family transcriptional regulator n=1 Tax=Achr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11921contigP-wetherbeei_contig11921:64..426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1216976.AX27061_1931
Preferred namemarR
PFAMsMarR,MarR_2
Model size363
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.26e-37
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria,1N7BV@1224|Proteobacteria,2VU53@28216|Betaproteobacteria,3T4ET@506|Alcaligenaceae
Descriptiontranscriptional
Cds size360
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.5396564-CDS-P-wetherbeei_contig11921:63..4231683185931.5396564-CDS-P-wetherbeei_contig11921:63..423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11921 64..423 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.5509117-UTR-P-wetherbeei_contig11921:423..4261683185931.5509117-UTR-P-wetherbeei_contig11921:423..426Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11921 424..426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11921.1.1prot_P-wetherbeei_contig11921.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11921 64..423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11921.1.1

>prot_P-wetherbeei_contig11921.1.1 ID=prot_P-wetherbeei_contig11921.1.1|Name=mRNA_P-wetherbeei_contig11921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MQRHFEKRMQPLDLTAMQWGPLLLMAEGRASTAAELARGMDIDTGAMTRM
LDRLEAKGLVARARSASDRRVVQLELTAEGAKVASQIPQQLADVLNLHLK
DFKADELHMLMGFLKRMIAN
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mRNA from alignment at P-wetherbeei_contig11921:64..426-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11921.1.1 ID=mRNA_P-wetherbeei_contig11921.1.1|Name=mRNA_P-wetherbeei_contig11921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig11921:64..426- (Phaeothamnion wetherbeei SAG_119_79)
TCCATGCAGCGGCATTTCGAGAAACGCATGCAGCCGCTCGACCTGACAGC CATGCAATGGGGGCCGCTGCTGCTGATGGCCGAGGGTCGCGCCAGCACCG CCGCCGAACTCGCGCGCGGCATGGATATCGACACCGGCGCCATGACCCGC ATGCTCGACAGGCTCGAGGCCAAGGGTCTGGTCGCGCGTGCGCGTAGTGC CAGCGATCGACGCGTGGTGCAGCTTGAGCTGACCGCCGAGGGCGCCAAGG TTGCCAGCCAGATCCCGCAGCAACTTGCCGACGTGCTCAATCTTCACCTG AAGGATTTCAAGGCGGACGAACTACACATGTTGATGGGCTTTCTCAAGCG CATGATCGCTAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11921:64..426-

>mRNA_P-wetherbeei_contig11921.1.1 ID=mRNA_P-wetherbeei_contig11921.1.1|Name=mRNA_P-wetherbeei_contig11921.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig11921:64..426- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGGCATTTCGAGAAACGCATGCAGCCGCTCGACCTGACAGCCAT
GCAATGGGGGCCGCTGCTGCTGATGGCCGAGGGTCGCGCCAGCACCGCCG
CCGAACTCGCGCGCGGCATGGATATCGACACCGGCGCCATGACCCGCATG
CTCGACAGGCTCGAGGCCAAGGGTCTGGTCGCGCGTGCGCGTAGTGCCAG
CGATCGACGCGTGGTGCAGCTTGAGCTGACCGCCGAGGGCGCCAAGGTTG
CCAGCCAGATCCCGCAGCAACTTGCCGACGTGCTCAATCTTCACCTGAAG
GATTTCAAGGCGGACGAACTACACATGTTGATGGGCTTTCTCAAGCGCAT
GATCGCTAAC
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