mRNA_P-wetherbeei_contig1192.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1192.1.1
Unique NamemRNA_P-wetherbeei_contig1192.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Match: UPI00041B7D31 (cupin domain-containing protein n=2 Tax=Aliagarivorans TaxID=882379 RepID=UPI00041B7D31)

HSP 1 Score: 58.5 bits (140), Expect = 7.900e-10
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   43 VEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVVKEGRM 165
            +EK F +RGYSFG+FEDP G++W DF H  +EL+VV EG +
Sbjct:   12 LEKEFLQRGYSFGIFEDPPGQQWLDFVHSVDELLVVLEGDL 52          
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Match: A0A520PF18_9PROT (Cupin domain-containing protein n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A520PF18_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 7.720e-9
Identity = 21/45 (46.67%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   31 DEKQVEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVVKEGRM 165
            D K++ + ++ RG+SFG+F DP GR W+DF+H   ELV++ EG++
Sbjct:    2 DAKKIRQQWESRGFSFGIFRDPPGRVWQDFSHSTEELVILAEGQI 46          
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Match: E1Z423_CHLVA (Cupin_2 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z423_CHLVA)

HSP 1 Score: 52.0 bits (123), Expect = 3.440e-7
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   43 VEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVVKEGRM 165
            VE+ ++ RGY+  +F DP G+EW DFTH  +ELVVV  GRM
Sbjct:   22 VERDWRPRGYTCDLFVDPPGKEWVDFTHKEDELVVVVTGRM 62          
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Match: A0A5J4E495_9BACT (Cupin_2 domain-containing protein n=1 Tax=bacterium MnTg03 TaxID=2080453 RepID=A0A5J4E495_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 5.410e-7
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   25 PSDEKQVEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVVKEGRM 165
            P D   VE  ++  G+SFG+F DP G+EW +F+H  +E V+V EG++
Sbjct:   13 PVDFSSVEADWQREGFSFGIFRDPPGQEWNNFSHQTDEYVLVAEGQL 59          
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Match: A0A533ZF65_9BACT (Cupin domain-containing protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A533ZF65_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 7.360e-7
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   31 DEKQVEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVVKEGRM 165
            D+ QVEK ++ RG+S G++ DP G+ W D+TH  +EL++V EG +
Sbjct:    4 DQTQVEKDWQARGFSCGLWVDPPGQVWEDYTHSTDELLMVLEGEL 48          
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Match: A0A383DTU3_9ZZZZ (Cupin_2 domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A383DTU3_9ZZZZ)

HSP 1 Score: 50.8 bits (120), Expect = 7.870e-7
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   43 VEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVVKEGRM 165
            V K +++RG+S  ++EDP GREW DF H  +ELV+V EG +
Sbjct:   11 VRKDWEDRGFSCELWEDPPGREWNDFVHSTDELVMVIEGNL 51          
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Match: K9TA35_9CYAN (Cupin domain-containing protein n=3 Tax=Pleurocapsales TaxID=52604 RepID=K9TA35_9CYAN)

HSP 1 Score: 49.7 bits (117), Expect = 2.140e-6
Identity = 18/42 (42.86%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   40 QVEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVVKEGRM 165
            ++++++++RG+SFGV+ DP G+ W D+TH  +ELV++ EG +
Sbjct:    5 EIKQNWEKRGFSFGVWSDPPGQIWADYTHDTDELVMLAEGEI 46          
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Match: A0A2D4RW48_9DELT (Cupin domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D4RW48_9DELT)

HSP 1 Score: 49.3 bits (116), Expect = 2.660e-6
Identity = 18/41 (43.90%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   43 VEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVVKEGRM 165
            + + +K + +SFG+F DP GR W DF+H  +ELV++ EG++
Sbjct:    6 IRQQWKSKCFSFGIFRDPPGRVWLDFSHSTDELVILAEGQI 46          
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Match: A0A3D0I9Y9_9DELT (Cupin domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D0I9Y9_9DELT)

HSP 1 Score: 47.4 bits (111), Expect = 1.620e-5
Identity = 18/41 (43.90%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   43 VEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVVKEGRM 165
            +E+S++ERG+S G++ DP G+ W D+ H  +ELV+V +G +
Sbjct:    6 IERSWRERGFSCGLWIDPPGQVWEDYVHDVDELVMVMDGEV 46          
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Match: UPI00040698C0 (cupin domain-containing protein n=1 Tax=Thermithiobacillus tepidarius TaxID=929 RepID=UPI00040698C0)

HSP 1 Score: 46.2 bits (108), Expect = 4.600e-5
Identity = 17/41 (41.46%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   43 VEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVVKEGRM 165
            +++ +  RG+S G++ DP G+ WRD+TH  +EL++V EG +
Sbjct:    6 IQQDWARRGFSCGLWIDPPGQVWRDYTHPADELLMVMEGEL 46          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1192.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI00041B7D317.900e-1058.54cupin domain-containing protein n=2 Tax=Aliagarivo... [more]
A0A520PF18_9PROT7.720e-946.67Cupin domain-containing protein n=3 Tax=Proteobact... [more]
E1Z423_CHLVA3.440e-756.10Cupin_2 domain-containing protein n=1 Tax=Chlorell... [more]
A0A5J4E495_9BACT5.410e-744.68Cupin_2 domain-containing protein n=1 Tax=bacteriu... [more]
A0A533ZF65_9BACT7.360e-746.67Cupin domain-containing protein n=1 Tax=Nitrospira... [more]
A0A383DTU3_9ZZZZ7.870e-751.22Cupin_2 domain-containing protein n=3 Tax=root Tax... [more]
K9TA35_9CYAN2.140e-642.86Cupin domain-containing protein n=3 Tax=Pleurocaps... [more]
A0A2D4RW48_9DELT2.660e-643.90Cupin domain-containing protein n=1 Tax=Deltaprote... [more]
A0A3D0I9Y9_9DELT1.620e-543.90Cupin domain-containing protein n=1 Tax=Deltaprote... [more]
UPI00040698C04.600e-541.46cupin domain-containing protein n=1 Tax=Thermithio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1192contigP-wetherbeei_contig1192:230..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1120970.AUBZ01000027_gene1507
PFAMsCupin_2
Model size165
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.3e-10
EggNOG OGsCOG0662@1|root,COG0662@2|Bacteria,1N7Q4@1224|Proteobacteria,1SEVR@1236|Gammaproteobacteria
DescriptionCupin domain
Cds size165
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.4173803-CDS-P-wetherbeei_contig1192:229..2641683185931.4173803-CDS-P-wetherbeei_contig1192:229..264Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1192 230..264 -
1683185931.4338536-CDS-P-wetherbeei_contig1192:354..4841683185931.4338536-CDS-P-wetherbeei_contig1192:354..484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1192 355..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1192.1.1prot_P-wetherbeei_contig1192.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1192 230..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1192.1.1

>prot_P-wetherbeei_contig1192.1.1 ID=prot_P-wetherbeei_contig1192.1.1|Name=mRNA_P-wetherbeei_contig1192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
IDRKHFKDPSDEKQVEKSFKERGYSFGVFEDPQGREWRDFTHGGNELVVV
KEGRM
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mRNA from alignment at P-wetherbeei_contig1192:230..484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1192.1.1 ID=mRNA_P-wetherbeei_contig1192.1.1|Name=mRNA_P-wetherbeei_contig1192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig1192:230..484- (Phaeothamnion wetherbeei SAG_119_79)
ATCGACCGAAAGCACTTCAAGGATCCCTCAGACGAGAAGCAGGTCGAGAA ATCTTTCAAAGAGAGAGGATACAGTTTTGGGGTCTTCGAGGACCCCCAGG GAAGAGAGTGGCGCGACTTCACTCACGGAGGTAGGTACTGGAACGCGTGA AAATAAGAGTCAAAACAAATAAGCATACCACACTTATTTGACCTTGGCTT GTTTTCTTGCGTCCTAGTAGGGAATGAGCTCGTTGTCGTCAAGGAAGGTC GCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1192:230..484-

>mRNA_P-wetherbeei_contig1192.1.1 ID=mRNA_P-wetherbeei_contig1192.1.1|Name=mRNA_P-wetherbeei_contig1192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig1192:230..484- (Phaeothamnion wetherbeei SAG_119_79)
ATCGACCGAAAGCACTTCAAGGATCCCTCAGACGAGAAGCAGGTCGAGAA
ATCTTTCAAAGAGAGAGGATACAGTTTTGGGGTCTTCGAGGACCCCCAGG
GAAGAGAGTGGCGCGACTTCACTCACGGAGGGAATGAGCTCGTTGTCGTC
AAGGAAGGTCGCATG
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