mRNA_P-wetherbeei_contig11884.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11884.1.1
Unique NamemRNA_P-wetherbeei_contig11884.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11884.1.1 vs. uniprot
Match: A0A6H5JVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.400e-10
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    1 VRRGDLDAVRHALEAPGGAALEEKSGQFWCTPLLEACRFRQARVATLLLDAGARVDACGGGRYTALHCACDGPADGA 231
            +RRG+L  V+  L+  G   +E   G+F  T L EACRFR  +V  LLL+ GA  +  GGG +T LH AC+GP  G+
Sbjct:   22 IRRGNLAEVKRFLDEGGN--VETVGGRFHSTLLTEACRFRATKVIELLLERGAAANVSGGGCWTPLHYACNGPCRGS 96
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BLAST of mRNA_P-wetherbeei_contig11884.1.1 vs. uniprot
Match: D7FQI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.000e-9
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    1 VRRGDLDAVRHALEAPGGAALEEKSGQFWCTPLLEACRFRQARVATLLLDAGARVDACGGGRYTALHCACDGPADG 228
            +RRG+L  V+  L+  G   +E   G+F  T L EACRFR  +V  LLL+ GA  +  GGG +T LH AC+GP  G
Sbjct:   19 IRRGNLAEVKRFLDEGGN--VETVGGRFHSTLLTEACRFRATKVIDLLLERGAAANVSGGGFWTPLHYACNGPCRG 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11884.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVF4_9PHAE7.400e-1045.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQI7_ECTSI1.000e-946.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11884contigP-wetherbeei_contig11884:161..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQI7
Preferred nameANKRD42
PFAMsAnk,Ank_2,Ank_4,Ank_5
Model size369
Max annot lvl2759|Eukaryota
KEGG koko:K06694,ko:K10329,ko:K17593
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.64e-10
EggNOG OGsCOG0666@1|root,KOG4412@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-01_008830.1
Descriptionproteasome regulatory particle assembly
Cds size369
COG categoryL
BRITEko00000,ko01009,ko03051,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.819167-CDS-P-wetherbeei_contig11884:160..5291683185929.819167-CDS-P-wetherbeei_contig11884:160..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11884 161..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11884.1.1prot_P-wetherbeei_contig11884.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11884 161..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11884.1.1

>prot_P-wetherbeei_contig11884.1.1 ID=prot_P-wetherbeei_contig11884.1.1|Name=mRNA_P-wetherbeei_contig11884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
VRRGDLDAVRHALEAPGGAALEEKSGQFWCTPLLEACRFRQARVATLLLD
AGARVDACGGGRYTALHCACDGPADGAGTELVVLLLERGADADAVDHFGR
TPLHFACKTGAFESALVLLQGGA
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mRNA from alignment at P-wetherbeei_contig11884:161..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11884.1.1 ID=mRNA_P-wetherbeei_contig11884.1.1|Name=mRNA_P-wetherbeei_contig11884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig11884:161..529- (Phaeothamnion wetherbeei SAG_119_79)
GTCCGCCGCGGAGATCTCGATGCGGTACGGCACGCCCTCGAAGCTCCGGG
CGGCGCGGCGCTGGAGGAAAAGAGCGGTCAGTTCTGGTGTACGCCGCTCC
TTGAAGCATGTCGCTTCCGCCAGGCACGCGTCGCGACGTTGCTACTCGAC
GCCGGCGCCCGCGTCGACGCCTGCGGCGGCGGTCGCTACACCGCCCTGCA
CTGCGCCTGCGACGGCCCCGCCGACGGCGCCGGCACGGAGCTCGTCGTGC
TGCTTCTGGAGCGCGGTGCCGACGCCGACGCCGTCGATCACTTCGGCCGA
ACGCCGCTACATTTTGCCTGCAAAACCGGAGCCTTTGAATCTGCGCTCGT
GCTCCTGCAAGGCGGCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11884:161..529-

>mRNA_P-wetherbeei_contig11884.1.1 ID=mRNA_P-wetherbeei_contig11884.1.1|Name=mRNA_P-wetherbeei_contig11884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig11884:161..529- (Phaeothamnion wetherbeei SAG_119_79)
GTCCGCCGCGGAGATCTCGATGCGGTACGGCACGCCCTCGAAGCTCCGGG
CGGCGCGGCGCTGGAGGAAAAGAGCGGTCAGTTCTGGTGTACGCCGCTCC
TTGAAGCATGTCGCTTCCGCCAGGCACGCGTCGCGACGTTGCTACTCGAC
GCCGGCGCCCGCGTCGACGCCTGCGGCGGCGGTCGCTACACCGCCCTGCA
CTGCGCCTGCGACGGCCCCGCCGACGGCGCCGGCACGGAGCTCGTCGTGC
TGCTTCTGGAGCGCGGTGCCGACGCCGACGCCGTCGATCACTTCGGCCGA
ACGCCGCTACATTTTGCCTGCAAAACCGGAGCCTTTGAATCTGCGCTCGT
GCTCCTGCAAGGCGGCGCG
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