mRNA_P-wetherbeei_contig1187.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1187.3.1
Unique NamemRNA_P-wetherbeei_contig1187.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Match: W4FM96_9STRA (Ribosomal protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FM96_9STRA)

HSP 1 Score: 286 bits (733), Expect = 6.900e-93
Identity = 141/218 (64.68%), Postives = 172/218 (78.90%), Query Frame = 2
Query:  236 LHPVGTALHLVRANARAKFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGKTIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMMPLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLVRAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKGYRVDPVTIDPGSSKFM 889
            L P+  AL   +  A  KFDETV++ + LGVDPRKPNQSVRS+V+LPHG GK +RVAVFA+G +AD+AR AGA +VGAEDL+  +Q G +DFDRC+ATPDMM LVGR+ RVLGPRGLMPNPKLGTV +D+  A+  A  GQV+F+A+K G+V AG+GK SF+  ALLDN+R FMVAV  AKPEGAKGKYV+  HLSSTMG G R+DP  +DP S +FM
Sbjct:   44 LVPLNVALAACKQGAVRKFDETVDIVVELGVDPRKPNQSVRSVVTLPHGTGKVVRVAVFAKGDKADEARAAGATIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAITAAMGGQVEFRAEKKGIVHAGVGKVSFSDDALLDNIRAFMVAVGEAKPEGAKGKYVKACHLSSTMGHGIRLDPRQLDPSSPQFM 261          
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Match: A0A024UFR5_9STRA (Ribosomal protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UFR5_9STRA)

HSP 1 Score: 283 bits (724), Expect = 1.640e-91
Identity = 139/218 (63.76%), Postives = 173/218 (79.36%), Query Frame = 2
Query:  236 LHPVGTALHLVRANARAKFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGKTIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMMPLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLVRAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKGYRVDPVTIDPGSSKFM 889
            L P+  AL   +  A  KFDETV++ + LGVDPRKPNQSVRS+VSLPHG GK +RVAVFA+G +AD+AR AGA +VGAEDL+  +Q G +DFDRC+ATPDMM LVGR+ RVLGPRGLMPNPKLGTV +D+  A++ A+ GQV+F+A+K G+V AG+GK SF+  ALL+N+R FMVAV  AKPEGAKGKY++  HLSSTMG+G R+D   +DP S  FM
Sbjct:   45 LLPLNVALVECKQGAVRKFDETVDIVVELGVDPRKPNQSVRSVVSLPHGTGKVVRVAVFAKGDKADEARAAGAAIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAIKAAQGGQVEFRAEKKGIVHAGVGKVSFSDEALLENIRAFMVAVGEAKPEGAKGKYIKACHLSSTMGRGIRLDTRYLDPSSPHFM 262          
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Match: A0A067C8G8_SAPPC (Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8G8_SAPPC)

HSP 1 Score: 280 bits (716), Expect = 2.490e-90
Identity = 134/213 (62.91%), Postives = 174/213 (81.69%), Query Frame = 2
Query:  251 TALHLVRANARAKFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGKTIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMMPLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLVRAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKGYRVDPVTIDPGSSKFM 889
            TAL   + NA  KFDETV++ + LGVDPRKPNQSVR +V+LP+G GKT+RVAVFA+G +A++A+ AGA +VGAEDL+  +Q G +DFDRC+ATPDMM LVGR+ RVLGPRGLMPNPKLGTV +D++ A+  AK GQV+F+A+K G+V AG+GK SF+  AL++N+R FMVA+ +AKPEGAKGKY++ MHLSSTMG G R++   +DP S +FM
Sbjct:   49 TALANCKENAVRKFDETVDIVVELGVDPRKPNQSVRGVVTLPNGTGKTVRVAVFAKGEKAEEAKAAGATIVGAEDLLADIQAGKLDFDRCIATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVSAAISAAKGGQVEFRAEKKGIVHAGVGKVSFSDDALIENIRAFMVAIGDAKPEGAKGKYIKAMHLSSTMGPGIRLEARLLDPSSPQFM 261          
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Match: K3WYK8_GLOUD (Ribosomal protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYK8_GLOUD)

HSP 1 Score: 280 bits (716), Expect = 3.710e-90
Identity = 134/201 (66.67%), Postives = 171/201 (85.07%), Query Frame = 2
Query:  287 KFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGKTIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMMPLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLVRAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKGYRVDPVTIDPGSSKFM 889
            KFDET+++A++LGVDPRKPNQSVR +VSLP+G GKT+RVAVFARG +A++A+ AGA +VGAEDLVE +Q+G ++FDRC+ATPD+MPLVGR+ R+LGPRGLMPNPKLGTV  D+A A+  AK GQV+F+A+K G++ AGIGKASF+  ALL+N+R FMVA+ +AKPEGAKGKY++  HLSSTMG G  +D   IDP S+ FM
Sbjct:   72 KFDETIDIAVQLGVDPRKPNQSVRGVVSLPNGTGKTVRVAVFARGPKAEEAKAAGATIVGAEDLVELVQSGKLEFDRCIATPDVMPLVGRVARILGPRGLMPNPKLGTVTLDVADAISAAKGGQVEFRAEKKGIIHAGIGKASFSEEALLENVRAFMVALGDAKPEGAKGKYIKAAHLSSTMGPGLALDAKQIDPSSAFFM 272          
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Match: A0A8K1CQ82_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ82_PYTOL)

HSP 1 Score: 280 bits (716), Expect = 3.710e-90
Identity = 133/204 (65.20%), Postives = 174/204 (85.29%), Query Frame = 2
Query:  278 ARAKFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGKTIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMMPLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLVRAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKGYRVDPVTIDPGSSKFM 889
            +R KFDETV++A++LGVDPRKPNQSVR +V+LP+G GKT+RVAVFARG +A++A+ AGA +VGAEDLVE +Q G +DFDRC+ATPD+MPLVGR+ R+LGPRGLMPNPKLGTV  D+A A+  A+AGQV+F+A+K G+V AG+GK SF+  ALL+N+R F+VA+S+AKPEGAKGKY++  HLS+TMG G  +D   +DP S++FM
Sbjct:   69 SRRKFDETVDIAIQLGVDPRKPNQSVRGVVALPNGTGKTVRVAVFARGVKAEEAKAAGAAIVGAEDLVEMVQKGQLDFDRCIATPDVMPLVGRVARILGPRGLMPNPKLGTVTVDVADAIAAAQAGQVEFRAEKKGIVHAGVGKVSFSEEALLENIRAFVVALSDAKPEGAKGKYIKAAHLSTTMGPGIALDIKYLDPSSAQFM 272          
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Match: A0A363TXH0_9BRAD (50S ribosomal protein L1 n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TXH0_9BRAD)

HSP 1 Score: 276 bits (707), Expect = 2.490e-89
Identity = 137/228 (60.09%), Postives = 180/228 (78.95%), Query Frame = 2
Query:  209 ARQHAQGPALHPVGTALHLVRANARAKFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGKTIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMMPLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLVRAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKGYRVDPVTIDPGSSKFMA 892
            AR+      L+P+G A+ LV+  A+AKFDET+EVA+ LGVDPR  +Q VR +VSLP+G G+T+RVAVFARGA+A++A+ AGADVVGAEDLVE +QNGN+DFDRC+ATPD+MPLVGR+G+VLGPRGLMPNPK+GTV  D+A AV+ AK G V+F+ +K G++ AG+GKASF+   L++N+R F  AV  AKP GAKG YV+ + +SSTMG G +V+P ++   SS   A
Sbjct:   11 AREGVDRTKLYPIGEAVKLVKERAKAKFDETIEVAMNLGVDPRHADQMVRGVVSLPNGSGRTMRVAVFARGAKAEEAKAAGADVVGAEDLVEKVQNGNIDFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVANAVKGAKGGSVEFRVEKAGIIHAGVGKASFSADKLVENIRAFADAVQKAKPAGAKGTYVQRVAVSSTMGPGVKVEPASLFGASSSGNA 238          
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Match: A0A3R7KSH3_9STRA (Ribosomal protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KSH3_9STRA)

HSP 1 Score: 277 bits (709), Expect = 4.390e-89
Identity = 133/215 (61.86%), Postives = 175/215 (81.40%), Query Frame = 2
Query:  245 VGTALHLVRANARAKFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGKTIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMMPLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLVRAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKGYRVDPVTIDPGSSKFM 889
            V TA+   +A  + KFDETV++A++LGVDPRKPNQSVR +VSLP+G GK +RVAVFARG +A++A+ AGA +VGAEDLVE +Q+G +DFDRC+ATPD+M LVGR+ R+LGPRGLMPNPKLGTV  ++  A+  A+ GQV+F+A+K G++ AG+GK SF+  ALL+N+R FMVA+S+AKPEGAKGKY++  HLSSTMG  Y +D   +DP S+ FM
Sbjct:   59 VMTAVSKCKAQKQLKFDETVDLAIQLGVDPRKPNQSVRGVVSLPNGTGKQVRVAVFARGPKAEEAKAAGATIVGAEDLVEQVQSGKLDFDRCIATPDVMALVGRVARILGPRGLMPNPKLGTVTMEVGEAIAAARGGQVEFRAEKKGIIHAGVGKVSFSEEALLENVRAFMVALSDAKPEGAKGKYIKAAHLSSTMGPSYTLDIKYLDPSSTSFM 273          
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Match: A0A3M0WQL6_9PROT (50S ribosomal protein L1 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0WQL6_9PROT)

HSP 1 Score: 275 bits (704), Expect = 5.980e-89
Identity = 142/219 (64.84%), Postives = 173/219 (79.00%), Query Frame = 2
Query:  209 ARQHAQGPALHPVGTALHLVRANARAKFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGKTIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMMPLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLVRAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKGYRVDPVTI 865
            AR   +GP  +PV  A+ L++ NA AKFDET+EVA+ LGVDPR  +Q VR  V+LPHG GK +RVAVFARGA+AD+AREAGADVVGAEDLVE +Q GN+DFDR +ATPDMMPLVGR+GR+LGPR LMPNPK+GTV  D+A AV+ AK GQVQFK +K G+V AGIGKASF   AL +NLR F+ AV+ AKP GAKG Y++ + +SSTMG G  VD  ++
Sbjct:   13 ARIGGKGP--YPVEEAVRLIKENATAKFDETIEVAVNLGVDPRHADQMVRGTVNLPHGTGKPVRVAVFARGAKADEAREAGADVVGAEDLVEQVQAGNIDFDRAIATPDMMPLVGRLGRILGPRNLMPNPKVGTVTMDVAGAVKAAKGGQVQFKVEKAGIVHAGIGKASFDEKALAENLRAFVDAVNKAKPSGAKGTYLKKVSISSTMGPGVSVDLASV 229          
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Match: A0A5D6Y1W5_9STRA (Ribosomal protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1W5_9STRA)

HSP 1 Score: 276 bits (706), Expect = 9.900e-89
Identity = 130/201 (64.68%), Postives = 170/201 (84.58%), Query Frame = 2
Query:  287 KFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGKTIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMMPLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLVRAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKGYRVDPVTIDPGSSKFM 889
            KFDET+++A++LGVDPRKPNQSVR +V+LP+G GKT+RVAVFARG +A++A+ AGA +VGAEDLVE +Q+G ++FDRC+ATPD+M LVGR+ R+LGPRGLMPNPKLGTV  D+A A+  AK GQV+F+A+K G++ AGIGKASF+   LL+N+R FMVA+ +AKPEGAKGKY++  HLSSTMG G+ +D   +DP S+ FM
Sbjct:   66 KFDETIDIAVQLGVDPRKPNQSVRGVVTLPNGTGKTVRVAVFARGVKAEEAKAAGATIVGAEDLVEIVQSGKLEFDRCIATPDVMGLVGRVARILGPRGLMPNPKLGTVTVDVATAIAAAKGGQVEFRAEKKGIIHAGIGKASFSEEKLLENVRAFMVALGDAKPEGAKGKYIKAAHLSSTMGPGFALDAKQVDPSSAYFM 266          
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Match: A0A7C7PQN2_9PROT (50S ribosomal protein L1 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7C7PQN2_9PROT)

HSP 1 Score: 274 bits (701), Expect = 1.590e-88
Identity = 128/207 (61.84%), Postives = 172/207 (83.09%), Query Frame = 2
Query:  233 ALHPVGTALHLVRANARAKFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGKTIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMMPLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLVRAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKGYRVD 853
            A++ +G A+ L++  A+AKFDET+E+++ LGVDPR  +Q+VR +VSLPHG GKT+RVAVFA+G +AD+AREAGAD+VGAEDL E +Q G++DFDRC+ATPDMMP+VGR+G+VLGPRGLMPNPKLGTV  D+  A++  K GQV+F+A+K G+V AG+GKASF   AL++N++ F+ A+S AKP GAKG Y++ + LSSTMG G RV+
Sbjct:   19 AIYDIGEAVKLIKERAKAKFDETIEISMNLGVDPRHADQNVRGVVSLPHGTGKTVRVAVFAKGPKADEAREAGADIVGAEDLAEKIQGGDMDFDRCIATPDMMPVVGRLGKVLGPRGLMPNPKLGTVTADVTAAIQAVKGGQVEFRAEKAGIVHAGVGKASFGEEALVENVKAFVEAISRAKPSGAKGTYIKRIALSSTMGPGLRVE 225          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1187.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4FM96_9STRA6.900e-9364.68Ribosomal protein n=3 Tax=Aphanomyces astaci TaxID... [more]
A0A024UFR5_9STRA1.640e-9163.76Ribosomal protein n=4 Tax=Aphanomyces TaxID=100860... [more]
A0A067C8G8_SAPPC2.490e-9062.91Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=47... [more]
K3WYK8_GLOUD3.710e-9066.67Ribosomal protein n=1 Tax=Globisporangium ultimum ... [more]
A0A8K1CQ82_PYTOL3.710e-9065.20Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A363TXH0_9BRAD2.490e-8960.0950S ribosomal protein L1 n=1 Tax=Bradyrhizobiaceae... [more]
A0A3R7KSH3_9STRA4.390e-8961.86Ribosomal protein n=3 Tax=Phytophthora kernoviae T... [more]
A0A3M0WQL6_9PROT5.980e-8964.8450S ribosomal protein L1 n=1 Tax=Alphaproteobacter... [more]
A0A5D6Y1W5_9STRA9.900e-8964.68Ribosomal protein n=1 Tax=Pythium brassicum TaxID=... [more]
A0A7C7PQN2_9PROT1.590e-8861.8450S ribosomal protein L1 n=2 Tax=Alphaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1187contigP-wetherbeei_contig1187:3293..4325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008867404.1
Preferred nameMRPL1
PFAMsRibosomal_L1
Model size1033
Max annot lvl2759|Eukaryota
KEGG rclassRC00043,RC00070,RC00096,RC02896
KEGG koko:K01942,ko:K02863
KEGG ReactionR01074,R05145
KEGG Pathwayko00780,ko01100,ko03010,map00780,map01100,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categorymitochondrion
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue3.7e-93
EggNOG OGsCOG0081@1|root,KOG1569@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L1/ribosomal biogenesis protein
Ec32 orthologEc-15_002720.1
EC6.3.4.10,6.3.4.11,6.3.4.15,6.3.4.9
Descriptionstructural constituent of ribosome
Cds size864
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.2316725-UTR-P-wetherbeei_contig1187:3292..33831683185929.2316725-UTR-P-wetherbeei_contig1187:3292..3383Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1187 3293..3383 +
1683185929.263687-UTR-P-wetherbeei_contig1187:4247..43251683185929.263687-UTR-P-wetherbeei_contig1187:4247..4325Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1187 4248..4325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.2493136-CDS-P-wetherbeei_contig1187:3383..42471683185929.2493136-CDS-P-wetherbeei_contig1187:3383..4247Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1187 3384..4247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1187.3.1prot_P-wetherbeei_contig1187.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1187 3384..4247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1187.3.1

>prot_P-wetherbeei_contig1187.3.1 ID=prot_P-wetherbeei_contig1187.3.1|Name=mRNA_P-wetherbeei_contig1187.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=288bp
MRRLFNAAAAAPRHASSCSLRRRRPAAASLPSRSAATKAARQHAQGPALH
PVGTALHLVRANARAKFDETVEVALRLGVDPRKPNQSVRSMVSLPHGIGK
TIRVAVFARGAEADKAREAGADVVGAEDLVESMQNGNVDFDRCLATPDMM
PLVGRIGRVLGPRGLMPNPKLGTVMRDIALAVRTAKAGQVQFKADKDGLV
RAGIGKASFALPALLDNLRTFMVAVSNAKPEGAKGKYVRGMHLSSTMGKG
YRVDPVTIDPGSSKFMAGGADPAVNAPAGEPSPPPAP*
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mRNA from alignment at P-wetherbeei_contig1187:3293..4325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1187.3.1 ID=mRNA_P-wetherbeei_contig1187.3.1|Name=mRNA_P-wetherbeei_contig1187.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1033bp|location=Sequence derived from alignment at P-wetherbeei_contig1187:3293..4325+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGAGCACGAGGCATTTTGTAAGTACGCCAGCCCTCGGCCAAACATTAC GCGACAATTGGCAACACCCCACACCATCTTCTTAAAACACCATGAGAAGG CTTTTCAACGCAGCGGCGGCCGCTCCTCGTCATGCGAGTTCCTGCTCCTT GCGAAGGAGACGACCAGCAGCTGCGTCGTTACCATCGCGGTCAGCCGCAA CCAAGGCCGCGCGACAGCACGCGCAGGGGCCGGCGTTGCATCCCGTAGGC ACGGCGCTGCATCTTGTGAGAGCAAACGCAAGGGCCAAGTTCGATGAGAC CGTCGAAGTGGCGTTGCGGCTCGGCGTCGACCCGCGAAAGCCGAATCAGA GCGTGCGGTCAATGGTCAGCCTGCCGCACGGCATCGGGAAGACTATCCGC GTGGCGGTCTTTGCCCGGGGAGCGGAGGCCGACAAGGCGAGAGAAGCCGG CGCCGACGTCGTCGGCGCGGAAGACCTCGTCGAGTCGATGCAGAACGGAA ACGTGGACTTCGACCGCTGCCTCGCCACGCCGGACATGATGCCGCTCGTT GGCCGCATCGGCCGCGTGCTGGGGCCGCGCGGCCTCATGCCCAACCCCAA GCTCGGCACGGTCATGCGGGACATCGCGCTGGCCGTCCGCACGGCCAAGG CCGGGCAGGTGCAGTTCAAGGCCGACAAGGATGGGCTCGTGCGGGCGGGC ATCGGCAAGGCGAGCTTTGCGCTGCCCGCGCTGCTCGACAACCTGCGCAC GTTCATGGTGGCCGTATCCAACGCCAAGCCCGAGGGCGCCAAGGGCAAGT ATGTGCGCGGTATGCACCTCTCCAGCACCATGGGCAAGGGCTACCGCGTC GATCCCGTCACGATAGATCCGGGAAGTTCCAAGTTTATGGCGGGCGGCGC TGATCCGGCCGTCAATGCTCCCGCCGGGGAGCCGTCGCCACCACCTGCGC CATGAAGCGCCAGCGGTGGGTTCGAGCGCCGGTCGGCATTTGACGGAACC TGGCGACCATCGTTCCACACCAGAAATAAATGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1187:3293..4325+

>mRNA_P-wetherbeei_contig1187.3.1 ID=mRNA_P-wetherbeei_contig1187.3.1|Name=mRNA_P-wetherbeei_contig1187.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig1187:3293..4325+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAAGGCTTTTCAACGCAGCGGCGGCCGCTCCTCGTCATGCGAGTTC
CTGCTCCTTGCGAAGGAGACGACCAGCAGCTGCGTCGTTACCATCGCGGT
CAGCCGCAACCAAGGCCGCGCGACAGCACGCGCAGGGGCCGGCGTTGCAT
CCCGTAGGCACGGCGCTGCATCTTGTGAGAGCAAACGCAAGGGCCAAGTT
CGATGAGACCGTCGAAGTGGCGTTGCGGCTCGGCGTCGACCCGCGAAAGC
CGAATCAGAGCGTGCGGTCAATGGTCAGCCTGCCGCACGGCATCGGGAAG
ACTATCCGCGTGGCGGTCTTTGCCCGGGGAGCGGAGGCCGACAAGGCGAG
AGAAGCCGGCGCCGACGTCGTCGGCGCGGAAGACCTCGTCGAGTCGATGC
AGAACGGAAACGTGGACTTCGACCGCTGCCTCGCCACGCCGGACATGATG
CCGCTCGTTGGCCGCATCGGCCGCGTGCTGGGGCCGCGCGGCCTCATGCC
CAACCCCAAGCTCGGCACGGTCATGCGGGACATCGCGCTGGCCGTCCGCA
CGGCCAAGGCCGGGCAGGTGCAGTTCAAGGCCGACAAGGATGGGCTCGTG
CGGGCGGGCATCGGCAAGGCGAGCTTTGCGCTGCCCGCGCTGCTCGACAA
CCTGCGCACGTTCATGGTGGCCGTATCCAACGCCAAGCCCGAGGGCGCCA
AGGGCAAGTATGTGCGCGGTATGCACCTCTCCAGCACCATGGGCAAGGGC
TACCGCGTCGATCCCGTCACGATAGATCCGGGAAGTTCCAAGTTTATGGC
GGGCGGCGCTGATCCGGCCGTCAATGCTCCCGCCGGGGAGCCGTCGCCAC
CACCTGCGCCATGA
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