mRNA_P-wetherbeei_contig11868.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11868.1.1
Unique NamemRNA_P-wetherbeei_contig11868.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Match: A0A0F9K9I6_9ZZZZ (Flg_hook domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9K9I6_9ZZZZ)

HSP 1 Score: 80.1 bits (196), Expect = 1.130e-16
Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   49 PMDQPALFAERLNQHISFMVGDHIQTAQIAVSPADLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLSQAGV 312
            P  Q + +++ +N  + +M  + IQ A++ ++PA+LGPVEV++ +  D+A +  TA HAATR+AL +ALPRLR SFAE GI L+ A V
Sbjct:   30 PTIQSSAWSQVMNSRVVWMAKEGIQQAELKMTPANLGPVEVKLHMQNDQATVSFTAQHAATRDALEQALPRLRESFAENGIQLNHAEV 117          
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Match: A0A7C1W5H1_9GAMM (Flagellar hook-length control protein FliK n=1 Tax=Methylophaga aminisulfidivorans TaxID=230105 RepID=A0A7C1W5H1_9GAMM)

HSP 1 Score: 80.1 bits (196), Expect = 2.480e-15
Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   49 PMDQPALFAERLNQHISFMVGDHIQTAQIAVSPADLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLSQAGV 312
            P  Q + +++ +N  + +M  + IQ A++ ++PA+LGPVEV++ +  D+A +  TA HAATR+AL +ALPRLR SFAE GI L+ A V
Sbjct:  339 PTIQSSAWSQVMNSRVVWMAKEGIQQAELKMTPANLGPVEVKLHMQNDQATVSFTAQHAATRDALEQALPRLRESFAENGIQLNHAEV 426          
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Match: A0A7X1TXX6_9PROT (Flg_hook domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1TXX6_9PROT)

HSP 1 Score: 78.2 bits (191), Expect = 7.420e-15
Identity = 40/91 (43.96%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   49 PMDQPALFAERLNQHISFMVGDHIQTAQIAVSPADLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLSQAGVFAQ 321
            P+D P  FA+ L+Q + +MVG   Q A++ ++P +LGPVEVR+ + GD+A +Q  + HA  R A+  A+ RLR S A+AG+ L Q  V A+
Sbjct:  204 PVDGPD-FAQALSQQVVWMVGKDAQVAELRINPPELGPVEVRLLISGDDAVVQFASAHAEVRSAIEAAIERLRESMAQAGVQLGQTSVSAE 293          
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Match: A0A3N5NFQ1_9PROT (Flagellar hook-length control protein FliK n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5NFQ1_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 1.700e-14
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   70 FAERLNQHISFMVGDHIQTAQIAVSPADLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLSQAGVFA 318
            FAE L+Q + +M     Q A++ ++P +LGPVEVR+TL GDEA  Q  + HA  R A+  +L RLR + AEAGI L QA V A
Sbjct:  241 FAEALSQRVVWMADKDAQVAELHLNPPELGPVEVRLTLAGDEASAQFVSPHAEVRNAIEASLARLREALAEAGIELGQASVSA 323          
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Match: UPI0019330DCE (flagellar hook-length control protein FliK n=1 Tax=Steroidobacter gossypii TaxID=2805490 RepID=UPI0019330DCE)

HSP 1 Score: 75.5 bits (184), Expect = 5.000e-14
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   64 ALFAERLNQHISFMVGDHIQTAQIAVSPADLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLSQAGV 312
            A +AE +   ++ MV     TA + +SP  LGP+EVR+T+ GD+A +Q  A HA TR A+ +ALPRLR  FA  G+SL+ A V
Sbjct:  169 ARWAEEIGSRMTMMVEQGKHTASLRLSPEHLGPLEVRITMNGDQASVQFGAQHADTRSAIQDALPRLREMFASQGLSLADANV 251          
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Match: A0A523NY64_9PROT (Flagellar hook-length control protein FliK n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NY64_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 5.910e-14
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   70 FAERLNQHISFMVGDHIQTAQIAVSPADLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLSQAGVFAQ 321
            FAE L+Q I  +    +Q A+I ++P DLGPV++R+ +  DE  +QL + HA  R+A+ EALPRLR  F  AG+ L+ + VF++
Sbjct:  236 FAEGLSQQIVLLAHGGVQQARITINPPDLGPVDLRIVVRNDEVVVQLASPHAVVRDAIEEALPRLREQFDSAGLRLADSEVFSE 319          
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Match: A0A1H7MU76_9GAMM (Flagellar hook-length control protein FliK n=2 Tax=Ectothiorhodospira TaxID=1051 RepID=A0A1H7MU76_9GAMM)

HSP 1 Score: 75.1 bits (183), Expect = 9.860e-14
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   46 LPMDQPALFAERLNQHIS----FMVGDHIQTAQIAVSPADLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLSQAGV 312
            +PM QP +   + N+ +     +MV  ++Q A++ ++P  LGP+E+RV++ GD A +Q  A HAATR+ L+ A+PRLR  FAE G+ L    V
Sbjct:  200 VPMPQPNMSQSKWNEAVGNRVLWMVNQNVQGAELRLNPPHLGPLEIRVSMEGDRANVQFLAPHAATRDTLDAAIPRLREMFAENGVQLGDVDV 292          
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Match: A0A0T5YY34_9GAMM (Flagellar hook-length control protein FliK n=6 Tax=sulfur-oxidizing symbionts TaxID=32036 RepID=A0A0T5YY34_9GAMM)

HSP 1 Score: 74.3 bits (181), Expect = 1.100e-13
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   46 LPMDQPALFAERLNQHISFMVGDHIQTAQIAVSPADLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLSQAGV 312
            +P+ QP  + + L   + +M+G +IQ A++ +SP  LGP+E+RV+L  D+A +   A HAATR+A+  ALPRLR    EA I+L+   V
Sbjct:  140 MPVGQPE-WNQSLGDRLQWMIGRNIQQAEVRLSPPHLGPLEIRVSLQNDQASVSFVAQHAATRDAIEAALPRLREMLGEANINLADVDV 227          
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Match: I1YKP9_METFJ (Flagellar hook-length control protein FliK n=1 Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) TaxID=754477 RepID=I1YKP9_METFJ)

HSP 1 Score: 74.7 bits (182), Expect = 1.890e-13
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   82 LNQHISFMVGDHIQTAQIAVSPADLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLSQAGV 312
            ++  +S+M  + IQ A++ ++PA LGPVEVR+ L  D+A +   A + ATREAL +ALPRLR S AE G+SL+QA V
Sbjct:  308 VSSRVSYMAKEGIQQAELRLNPASLGPVEVRLQLQQDQASVTFLAQNQATREALEQALPRLRDSLAEQGLSLTQADV 384          
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Match: A0A0A0BK40_9GAMM (Flg_hook domain-containing protein n=1 Tax=Methylophaga thiooxydans TaxID=392484 RepID=A0A0A0BK40_9GAMM)

HSP 1 Score: 74.7 bits (182), Expect = 2.000e-13
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 1
Query:   19 TAHAAKPAPLPMDQPAL----FAERLNQHISFMVGDHIQTAQIAVSPADLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLSQAGV 312
            TA +A+   LP+ QP L    +++ +N  + +M  + +  A++ ++PA+LGPVEVR+ +  D+A +   A H+ATR+AL +ALPRLR SFAEAGI L    V
Sbjct:  345 TAISAQGVSLPV-QPTLQNPAWSQVMNSRVVWMAKEGVHQAELRMTPANLGPVEVRLQVQNDQASVTFLAQHSATRDALEQALPRLRESFAEAGIELGHTEV 445          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11868.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9K9I6_9ZZZZ1.130e-1646.59Flg_hook domain-containing protein (Fragment) n=1 ... [more]
A0A7C1W5H1_9GAMM2.480e-1546.59Flagellar hook-length control protein FliK n=1 Tax... [more]
A0A7X1TXX6_9PROT7.420e-1543.96Flg_hook domain-containing protein n=1 Tax=Betapro... [more]
A0A3N5NFQ1_9PROT1.700e-1449.40Flagellar hook-length control protein FliK n=1 Tax... [more]
UPI0019330DCE5.000e-1446.99flagellar hook-length control protein FliK n=1 Tax... [more]
A0A523NY64_9PROT5.910e-1444.05Flagellar hook-length control protein FliK n=1 Tax... [more]
A0A1H7MU76_9GAMM9.860e-1440.86Flagellar hook-length control protein FliK n=2 Tax... [more]
A0A0T5YY34_9GAMM1.100e-1342.70Flagellar hook-length control protein FliK n=6 Tax... [more]
I1YKP9_METFJ1.890e-1350.65Flagellar hook-length control protein FliK n=1 Tax... [more]
A0A0A0BK40_9GAMM2.000e-1343.14Flg_hook domain-containing protein n=1 Tax=Methylo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11868contigP-wetherbeei_contig11868:2..322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog765914.ThisiDRAFT_2475
PFAMsFlg_hook
Model size321
Max annot lvl135613|Chromatiales
KEGG koko:K02414
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.01e-15
EggNOG OGsCOG3144@1|root,COG3144@2|Bacteria,1N7XT@1224|Proteobacteria,1SCA6@1236|Gammaproteobacteria,1WZU7@135613|Chromatiales
DescriptionPFAM flagellar hook-length control
Cds size321
COG categoryN
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.1147277-CDS-P-wetherbeei_contig11868:1..3221683185929.1147277-CDS-P-wetherbeei_contig11868:1..322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11868 2..322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11868.1.1prot_P-wetherbeei_contig11868.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11868 2..322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11868.1.1

>prot_P-wetherbeei_contig11868.1.1 ID=prot_P-wetherbeei_contig11868.1.1|Name=mRNA_P-wetherbeei_contig11868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
EAQAPATAHAAKPAPLPMDQPALFAERLNQHISFMVGDHIQTAQIAVSPA
DLGPVEVRVTLVGDEAKIQLTATHAATREALNEALPRLRASFAEAGISLS
QAGVFAQ
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mRNA from alignment at P-wetherbeei_contig11868:2..322-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11868.1.1 ID=mRNA_P-wetherbeei_contig11868.1.1|Name=mRNA_P-wetherbeei_contig11868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig11868:2..322- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGCAGGCGCCCGCTACTGCCCATGCTGCCAAACCGGCGCCACTGCC GATGGACCAGCCGGCGCTGTTTGCCGAGCGCTTGAATCAGCACATCTCCT TCATGGTCGGTGACCACATCCAGACCGCGCAGATAGCGGTCAGCCCGGCC GACCTGGGTCCGGTGGAAGTGCGCGTGACCTTGGTCGGCGACGAGGCCAA GATTCAACTCACCGCCACCCATGCGGCCACCCGTGAAGCCTTGAATGAAG CCTTGCCACGGCTGCGTGCGTCATTTGCGGAAGCCGGCATTTCGCTAAGT CAGGCCGGGGTGTTCGCCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11868:2..322-

>mRNA_P-wetherbeei_contig11868.1.1 ID=mRNA_P-wetherbeei_contig11868.1.1|Name=mRNA_P-wetherbeei_contig11868.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig11868:2..322- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGCAGGCGCCCGCTACTGCCCATGCTGCCAAACCGGCGCCACTGCC
GATGGACCAGCCGGCGCTGTTTGCCGAGCGCTTGAATCAGCACATCTCCT
TCATGGTCGGTGACCACATCCAGACCGCGCAGATAGCGGTCAGCCCGGCC
GACCTGGGTCCGGTGGAAGTGCGCGTGACCTTGGTCGGCGACGAGGCCAA
GATTCAACTCACCGCCACCCATGCGGCCACCCGTGAAGCCTTGAATGAAG
CCTTGCCACGGCTGCGTGCGTCATTTGCGGAAGCCGGCATTTCGCTAAGT
CAGGCCGGGGTGTTCGCCCAG
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