mRNA_P-wetherbeei_contig11815.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11815.1.1
Unique NamemRNA_P-wetherbeei_contig11815.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11815.1.1 vs. uniprot
Match: A0A1W0WLA3_HYPDU (Gamma-secretase subunit PEN-2 n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WLA3_HYPDU)

HSP 1 Score: 54.7 bits (130), Expect = 7.580e-6
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 2 
Query:   26 AQAKKTFILGCVLLLPWLWMMNW-WYFYGKLREGLLDADA-----RKWVMLSLAMSVLSFGALLAWVVVFQTHWHEWGA-AVYGSMVV 268
            A   + + LG   LLP+LW++N  W+F      G + A+A     R +V+ SL   V   GAL+AW+VVFQTH  +WG  A Y S ++
Sbjct:   19 ADLSRKYFLGGFALLPFLWLINVVWFFREAFCSGDVSANAEHKRIRGYVVKSLVGCVACTGALIAWIVVFQTHRVQWGPQADYMSFII 106
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BLAST of mRNA_P-wetherbeei_contig11815.1.1 vs. uniprot
Match: A0A6A3ZPJ7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZPJ7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.080e-5
Identity = 35/98 (35.71%), Postives = 52/98 (53.06%), Query Frame = 2 
Query:    8 NMTADAAQAKKTFILGCVLLLPWLWMMNWWYFYGKLREGLLDADARKWVMLSLAMSVLSFGALLAWVVVFQTHWHEWGAAVYGSMV-VVPEHDRT-GW 295
            N  AD + AKK F LG +  LPWL ++N  ++  +  +  +DA    WV  S           +AWV++FQ +W E+G   + S+V VVP+ D   GW
Sbjct:   38 NKEADESVAKKMF-LGGLAFLPWLHLVNVIFYRKQFMDPTIDASVTLWVRRSFMGFCFWTVLFVAWVLLFQLNWKEFG---WQSLVMVVPDQDENPGW 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11815.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1W0WLA3_HYPDU7.580e-639.77Gamma-secretase subunit PEN-2 n=1 Tax=Hypsibius du... [more]
A0A6A3ZPJ7_9STRA4.080e-535.71Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11815contigP-wetherbeei_contig11815:177..1356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1092
Hectar predicted targeting categoryother localisation
Exons2
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185927.1208184-UTR-P-wetherbeei_contig11815:176..3231683185927.1208184-UTR-P-wetherbeei_contig11815:176..323Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11815 177..323 +
1683185927.1444619-UTR-P-wetherbeei_contig11815:963..13561683185927.1444619-UTR-P-wetherbeei_contig11815:963..1356Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11815 964..1356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185927.1289327-CDS-P-wetherbeei_contig11815:323..3251683185927.1289327-CDS-P-wetherbeei_contig11815:323..325Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11815 324..325 +
1683185927.1367216-CDS-P-wetherbeei_contig11815:413..9631683185927.1367216-CDS-P-wetherbeei_contig11815:413..963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11815 414..963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11815.1.1prot_P-wetherbeei_contig11815.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11815 324..963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11815.1.1

>prot_P-wetherbeei_contig11815.1.1 ID=prot_P-wetherbeei_contig11815.1.1|Name=mRNA_P-wetherbeei_contig11815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MGYAFSGDVCAELRSAVGLGGGLPDALARVGRCCVRIYGGRARARQNWMV
SHIHSSSERRCRRDLEPTPKRRRFLEKSFHPCWRWMAQRSAAAESSAIDW
LDPLAFCRHRALRPTAAIPAAGAAGGGGTDGILAGRGVAFRSSGLPDFTT
VPWPPNEAVDCQGHRFWQARRLRRWLRRRRRRH*
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mRNA from alignment at P-wetherbeei_contig11815:177..1356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11815.1.1 ID=mRNA_P-wetherbeei_contig11815.1.1|Name=mRNA_P-wetherbeei_contig11815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1180bp|location=Sequence derived from alignment at P-wetherbeei_contig11815:177..1356+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGCAAAACATGACTGCCGACGCAGCGCAGGCGAAGAAGACCTTCATCC
TCGGCTGTGTCTTGCTCCTCCCGTGGCTGTGGATGATGAACTGGTGGTAC
TTTTACGGCAAACTTCGTGAGGGATTGCTTGATGCCGACGCCCGAAAATG
TACGTTTGCGCATGCCTAATAACCTTTGGCACTTGTATCCGCTTTGGCGA
CTCACAAGAGCACCTCCGTCCACCGCTTTTATTGCAGGGGTTATGCTTTC
TCTGGCGATGTCTGTGCTGAGCTTCGGAGCGCTGTTGGCCTGGGTGGTGG
TCTTCCAGACGCACTGGCACGAGTGGGGCGCTGCTGTGTACGGATCTATG
GTGGTCGTGCCCGAGCACGACAGAACTGGATGGTGAGCCATATACACAGC
TCTTCCGAACGGCGTTGCCGCCGTGATCTGGAGCCCACGCCAAAGCGTCG
TAGATTTCTCGAGAAGTCTTTCCATCCTTGCTGGCGTTGGATGGCCCAGC
GCTCGGCTGCTGCGGAATCAAGCGCCATCGATTGGCTGGATCCCCTTGCC
TTCTGCCGCCACCGCGCTTTGCGGCCCACAGCCGCCATTCCGGCCGCTGG
CGCTGCTGGCGGCGGCGGCACTGACGGCATTCTGGCCGGCAGGGGCGTCG
CGTTTCGTTCTTCTGGCCTGCCGGACTTTACTACCGTGCCATGGCCGCCC
AACGAAGCGGTCGACTGCCAGGGCCACCGTTTCTGGCAGGCGCGGCGGCT
GAGACGGTGGCTGCGGCGCCGCCGCCGGCGGCATTAACAGAACGGAGTCG
ACTGCCACCCTGGAGACGATCAAAGAGGAAGGGGCGGATGCGCCGCTTTG
TCGACGAATGCTGGCCGAACGGTGCCGGCGGTGCAGGTGTCGCCCGTCTT
CAGAGCCGAGCGAGGCCGCTCTTTACCTGCGTATCTTTATTTTTCTGGCG
CAGCTCGCCGCGAAGTAGGCACTTCATCATAAATACAGCCGCCCCGCTGC
GGAACGTGGGGGACGGCGGCAGTGACGTCGCAACAACCTCGCTCGAATGG
CGGAACGATTCGGCTGTGCGGCGCTAAAGATGGCGGCCGAGCGTGGGTGG
CATGGTTTTGTGGGGCCGCAAAGGTTTTGAGCGGCTTGTTGTCGTTTTTG
TCAAAAGATGCAGTTTCTGCAGCAAAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11815:177..1356+

>mRNA_P-wetherbeei_contig11815.1.1 ID=mRNA_P-wetherbeei_contig11815.1.1|Name=mRNA_P-wetherbeei_contig11815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig11815:177..1356+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTTATGCTTTCTCTGGCGATGTCTGTGCTGAGCTTCGGAGCGCTGT
TGGCCTGGGTGGTGGTCTTCCAGACGCACTGGCACGAGTGGGGCGCTGCT
GTGTACGGATCTATGGTGGTCGTGCCCGAGCACGACAGAACTGGATGGTG
AGCCATATACACAGCTCTTCCGAACGGCGTTGCCGCCGTGATCTGGAGCC
CACGCCAAAGCGTCGTAGATTTCTCGAGAAGTCTTTCCATCCTTGCTGGC
GTTGGATGGCCCAGCGCTCGGCTGCTGCGGAATCAAGCGCCATCGATTGG
CTGGATCCCCTTGCCTTCTGCCGCCACCGCGCTTTGCGGCCCACAGCCGC
CATTCCGGCCGCTGGCGCTGCTGGCGGCGGCGGCACTGACGGCATTCTGG
CCGGCAGGGGCGTCGCGTTTCGTTCTTCTGGCCTGCCGGACTTTACTACC
GTGCCATGGCCGCCCAACGAAGCGGTCGACTGCCAGGGCCACCGTTTCTG
GCAGGCGCGGCGGCTGAGACGGTGGCTGCGGCGCCGCCGCCGGCGGCATT
AA
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