mRNA_P-wetherbeei_contig1175.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1175.2.1
Unique NamemRNA_P-wetherbeei_contig1175.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1175.2.1 vs. uniprot
Match: A0A835YW33_9STRA (Transcription factor Pcc1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW33_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.060e-16
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 3 
Query:   78 PCRCDIEITFNSSRSVAMAKSVLEVDEELQPTRARRTMRI-GEKDDVLLVTFCATEAKQLRVSLSNFYDSAAVVARTLLEFDE 323
            P  C +E+ + S  + A+AK+ +EVDEELQP +  RT+ + G K   L+  F ATEAK LRVS+S F D+AA+V+RT+LEFDE
Sbjct:    5 PYVCKLELRYPSEATAAIAKASMEVDEELQPNKVSRTLELDGNK---LMAQFAATEAKVLRVSVSTFCDTAALVSRTMLEFDE 84
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BLAST of mRNA_P-wetherbeei_contig1175.2.1 vs. uniprot
Match: A0A164VLJ9_9AGAM (Transcription factor Pcc1 n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164VLJ9_9AGAM)

HSP 1 Score: 50.4 bits (119), Expect = 1.230e-5
Identity = 23/78 (29.49%), Postives = 50/78 (64.10%), Query Frame = 3 
Query:   90 DIEITFNSSRSVAMAKSVLEVDEELQPTRARRTMRIGEKDDVLLVTFCATEAKQLRVSLSNFYDSAAVVARTLLEFDE 323
            D+ + F S+    +A+ V++VD ELQP+  +R +++  +D+VL+ +F     +  R+++++F ++  +V RT+ EF +
Sbjct:   11 DVRVPFVSNEHAEIARRVIDVDPELQPSSVKRHLKV--EDNVLVASFSTLTVRLARLTINSFLENLDLVIRTIGEFGD 86
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BLAST of mRNA_P-wetherbeei_contig1175.2.1 vs. uniprot
Match: A0A369HA59_9HYPO (Uncharacterized protein n=1 Tax=Ophiocordyceps camponoti-saundersi (nom. inval.) TaxID=2039874 RepID=A0A369HA59_9HYPO)

HSP 1 Score: 49.7 bits (117), Expect = 2.710e-5
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 3 
Query:   78 PCRCDIEITFNSSRSVAMAKSVLEVDEELQPTRARRTMRIGEKDDVLLVTFCATEAKQLRVSLSNFYDSAAVVARTLLEFDEQI 329
            PC   + I   S R    A   L VD EL P  +RR   +   D VLLV +CAT  + LRV++++F D+  +V   +   D  +
Sbjct:   12 PCSLSLRIPLPSVRLAETAFGALRVDAELSPLVSRR---LSVDDAVLLVDYCATTNRMLRVAVNSFLDNVKLVLDVMEHLDVDV 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1175.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YW33_9STRA6.060e-1651.81Transcription factor Pcc1-domain-containing protei... [more]
A0A164VLJ9_9AGAM1.230e-529.49Transcription factor Pcc1 n=2 Tax=Sistotremastrum ... [more]
A0A369HA59_9HYPO2.710e-534.52Uncharacterized protein n=1 Tax=Ophiocordyceps cam... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1175contigP-wetherbeei_contig1175:3062..3526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJ03
PFAMsPcc1
Model size389
Max annot lvl2759|Eukaryota
KEGG koko:K15902
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.07e-18
EggNOG OGs2CYNW@1|root,2S5DA@2759|Eukaryota
Ec32 ortholog descriptionCTAG/Pcc1 family
Ec32 orthologEc-07_004940.1
DescriptionTranscription factor Pcc1
Cds size318
COG categoryS
BRITEko00000,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185924.9141304-UTR-P-wetherbeei_contig1175:3061..30781683185924.9141304-UTR-P-wetherbeei_contig1175:3061..3078Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1175 3062..3078 +
1683185924.9494882-UTR-P-wetherbeei_contig1175:3472..35261683185924.9494882-UTR-P-wetherbeei_contig1175:3472..3526Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1175 3473..3526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185924.925837-CDS-P-wetherbeei_contig1175:3078..31491683185924.925837-CDS-P-wetherbeei_contig1175:3078..3149Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1175 3079..3149 +
1683185924.9353929-CDS-P-wetherbeei_contig1175:3225..34721683185924.9353929-CDS-P-wetherbeei_contig1175:3225..3472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1175 3226..3472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1175.2.1prot_P-wetherbeei_contig1175.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1175 3079..3472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1175.2.1

>prot_P-wetherbeei_contig1175.2.1 ID=prot_P-wetherbeei_contig1175.2.1|Name=mRNA_P-wetherbeei_contig1175.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MNGEQQRLGSAEPLDAEISLPCRCDIEITFNSSRSVAMAKSVLEVDEELQ
PTRARRTMRIGEKDDVLLVTFCATEAKQLRVSLSNFYDSAAVVARTLLEF
DEQIT*
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mRNA from alignment at P-wetherbeei_contig1175:3062..3526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1175.2.1 ID=mRNA_P-wetherbeei_contig1175.2.1|Name=mRNA_P-wetherbeei_contig1175.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig1175:3062..3526+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCGCACACACCTCCGATGAATGGAGAACAGCAACGCCTAGGATCGGCG
GAACCATTGGACGCCGAGATTTCGCTTCCGTGCAGATGGTAAGACAAAGA
CCCCTCTGCGAACTGTACAAACATCTTCTCAGCTCTTCCCCTTTTTCCCC
CGGCCCGCCATCAGTGACATTGAGATCACGTTCAACAGTTCGAGAAGCGT
CGCGATGGCCAAGTCAGTGCTCGAAGTCGATGAGGAGCTTCAGCCAACTC
GAGCGAGGCGGACGATGAGGATTGGAGAGAAGGATGACGTCCTCCTCGTG
ACGTTCTGCGCAACCGAGGCCAAGCAATTGCGTGTTTCCCTGTCAAATTT
CTATGATAGTGCAGCTGTTGTTGCACGGACTCTGTTAGAGTTCGATGAAC
AAATCACATAAGAGGATGAAGGTTATGAACTGAAATGAAGGCTTTTCTCT
TTAAGATTGAAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1175:3062..3526+

>mRNA_P-wetherbeei_contig1175.2.1 ID=mRNA_P-wetherbeei_contig1175.2.1|Name=mRNA_P-wetherbeei_contig1175.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig1175:3062..3526+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATGGAGAACAGCAACGCCTAGGATCGGCGGAACCATTGGACGCCGA
GATTTCGCTTCCGTGCAGATGTGACATTGAGATCACGTTCAACAGTTCGA
GAAGCGTCGCGATGGCCAAGTCAGTGCTCGAAGTCGATGAGGAGCTTCAG
CCAACTCGAGCGAGGCGGACGATGAGGATTGGAGAGAAGGATGACGTCCT
CCTCGTGACGTTCTGCGCAACCGAGGCCAAGCAATTGCGTGTTTCCCTGT
CAAATTTCTATGATAGTGCAGCTGTTGTTGCACGGACTCTGTTAGAGTTC
GATGAACAAATCACATAA
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