mRNA_P-wetherbeei_contig11732.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11732.1.1
Unique NamemRNA_P-wetherbeei_contig11732.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Match: A0A3Q0S305_AMPCI (Hydroxylysine kinase, tandem duplicate 1 n=2 Tax=Heroini TaxID=318529 RepID=A0A3Q0S305_AMPCI)

HSP 1 Score: 64.7 bits (156), Expect = 3.280e-10
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 RKRLKPSVAMDQASTIAALLFGLTSASVESLPSYDDNNFKITASSGDIYTLKVQNGVESEDLSLLEAQSALAMRLNANGCTCPAAVATAGG 273
            +K  KP+++  QAS I   L+ LT+++++SLPSYDD NF +  S G  Y LK+ N  +S+++ L+E Q+     L  NG     A+ TA G
Sbjct:    3 QKHAKPNLSHSQASEIVKRLYRLTASAIQSLPSYDDQNFYVAPSEGGEYILKIMNSEDSKNVFLIEVQTYAMSFLQQNGIPAQTALPTASG 93          
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Match: C1EG93_MICCC (APH domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EG93_MICCC)

HSP 1 Score: 61.6 bits (148), Expect = 4.200e-9
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   79 SVESLPSYDDNNFKITASSGDIYTLKVQNGVESEDLSLLEAQSALAMRLNANGCTCPAAV 258
            S + L SYDD NF + A+SG  YTLKV NGVES++  LL+AQSA+   L A G  CP  V
Sbjct:   42 SAKELNSYDDRNFHVRATSGAQYTLKVHNGVESQNQPLLDAQSAMMRHLTARGVKCPCPV 101          
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Match: UPI0018EC7B37 (hydroxylysine kinase-like n=1 Tax=Micropterus salmoides TaxID=27706 RepID=UPI0018EC7B37)

HSP 1 Score: 58.5 bits (140), Expect = 4.400e-9
Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    4 KRLKPSVAMDQASTIAALLFGLTSASVESLPSYDDNNFKITASSGDIYTLKVQNGVESEDLSLLEAQSALAMRLNANGCTCPAAVATAGG 273
            K  KP+++  Q   +   LF LT + + SLPSYDD NF +TA  G  Y LK+ N  +S++ +L E Q+     L+ NG     A+ T  G
Sbjct:    4 KHSKPNLSQSQVVELVKRLFRLTPSEIRSLPSYDDQNFCVTAVEGGKYVLKIMNSEDSKNPTLFEVQTYAMSFLHQNGLPAQTALPTTSG 93          
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Match: UPI001E8D0BC7 (hydroxylysine kinase-like isoform X1 n=4 Tax=Micropterus TaxID=27705 RepID=UPI001E8D0BC7)

HSP 1 Score: 58.5 bits (140), Expect = 5.150e-8
Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    4 KRLKPSVAMDQASTIAALLFGLTSASVESLPSYDDNNFKITASSGDIYTLKVQNGVESEDLSLLEAQSALAMRLNANGCTCPAAVATAGG 273
            K  KP+++  Q   +   LF LT + + SLPSYDD NF +TA  G  Y LK+ N  +S++ +L E Q+     L+ NG     A+ T  G
Sbjct:   15 KHSKPNLSQSQVVELVKRLFRLTPSEIRSLPSYDDQNFCVTAVEGGKYVLKIMNSEDSKNPTLFEVQTYAMSFLHQNGLPAQTALPTTSG 104          
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Match: A0A6P7WYM3_9AMPH (hydroxylysine kinase n=1 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7WYM3_9AMPH)

HSP 1 Score: 58.5 bits (140), Expect = 5.190e-8
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   13 KPSVAMDQASTIAALLFGLTSASVESLPSYDDNNFKITA----SSGDI--YTLKVQNGVESEDLSLLEAQSALAMRLNANG 237
            KP++ M++A+ I   +FGL  + ++SLPSYDD NF + A    +S DI  Y LK+ NG +S++ SL+E Q+++ M L   G
Sbjct:   11 KPALTMEKAAEIIDAVFGLKVSEIKSLPSYDDQNFLVKALNNETSTDITEYVLKITNGTDSQNASLIELQTSVMMFLKEEG 91          
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Match: UPI001899B844 (hydroxylysine kinase n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI001899B844)

HSP 1 Score: 58.2 bits (139), Expect = 6.920e-8
Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 1
Query:    4 KRLKPSVAMDQASTIAALLFGLTSASVESLPSYDDNNFKITASSGDIYTLKVQNGVESEDLSLLEAQSALAMRLNANGCTCPAAVATAGG 273
            K  +P  +  Q S +   LF LT   ++SLPSYDD NF +    GD Y LK+ N  +S++ SL+E Q+     ++ NG     AV T  G
Sbjct:    4 KHAQPKFSKIQVSEMVKKLFNLTPREIQSLPSYDDQNFYVAPIEGDEYVLKIMNSEDSKNTSLVEVQTYAMSFVHQNGLPSQTAVPTKSG 93          
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Match: I3K3N3_ORENI (APH domain-containing protein n=12 Tax=Pseudocrenilabrinae TaxID=318546 RepID=I3K3N3_ORENI)

HSP 1 Score: 56.2 bits (134), Expect = 3.360e-7
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   13 KPSVAMDQASTIAALLFGLTSASVESLPSYDDNNFKITASSGDIYTLKVQNGVESEDLSLLEAQSALAMRLNANG 237
            KP+++  Q S I   L+ LT++ ++SLPSYDD NF +  S G  Y LK+ N  +S++  L+E Q+     L  NG
Sbjct:    6 KPNLSHSQVSEIVKRLYRLTASVIQSLPSYDDQNFYVAPSEGGEYILKIMNSEDSKNTLLIEVQTYAMSVLQQNG 80          
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Match: UPI00192F84F4 (hydroxylysine kinase n=1 Tax=Crotalus tigris TaxID=88082 RepID=UPI00192F84F4)

HSP 1 Score: 51.6 bits (122), Expect = 1.440e-5
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 RKRLKPSVAMDQASTIAALLFGLTSASVESLPSYDDNNFKITASS----GDI---YTLKVQNGVESEDLSLLEAQSALAMRLNANG 237
            R  +KP+    QA+ +   +FGL  + ++SLPSYDD NF ++A+S    G+    + LK+ N  +S++  L+E Q+ + M LN+ G
Sbjct:   10 RPLIKPTFTEKQAAELVRRIFGLEVSQLKSLPSYDDQNFHLSAASFPEKGESTRDFVLKIINAEDSKNTDLIEVQTQIMMFLNSEG 95          
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Match: UPI00062AB9B2 (hydroxylysine kinase isoform X1 n=2 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI00062AB9B2)

HSP 1 Score: 49.3 bits (116), Expect = 4.810e-5
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   13 KPSVAMDQASTIAALLFGLTSASVESLPSYDDNNFKITAS-----SGDI--YTLKVQNGVESEDLSLLEAQSALAMRLNANG 237
            KP+ +  QAST+   +FGL  + ++SLPSYDD NF +  S     +G +  Y LK+ N   S+   L+E Q+ + M L A G
Sbjct:   19 KPTFSEVQASTLVESVFGLKVSKIQSLPSYDDQNFHVYISRTKDSTGGLTEYVLKISNTETSKTPDLIEVQTHIIMFLRATG 100          
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Match: UPI0018D028C4 (hydroxylysine kinase isoform X1 n=2 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D028C4)

HSP 1 Score: 50.1 bits (118), Expect = 5.050e-5
Identity = 28/91 (30.77%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   10 LKPSVAMDQASTIAALLFGLTSASVESLPSYDDNNFKI-----------TASSGDIYTLKVQNGVESEDLSLLEAQSALAMRLNANGCTCP 249
            +KP +  ++   +   L+G++   +E L  YDD N+KI           T  S + Y LK+ N ++S++LS++EAQ+ +   + A   TCP
Sbjct:   17 IKPIITHEEVKLLVERLYGISVLELEELNGYDDKNYKIIEDPNVKNPLITNHSTEGYVLKIMNSMDSQNLSVVEAQNEIMNFITARSITCP 107          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11732.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A3Q0S305_AMPCI3.280e-1039.56Hydroxylysine kinase, tandem duplicate 1 n=2 Tax=H... [more]
C1EG93_MICCC4.200e-955.00APH domain-containing protein n=1 Tax=Micromonas c... [more]
UPI0018EC7B374.400e-937.78hydroxylysine kinase-like n=1 Tax=Micropterus salm... [more]
UPI001E8D0BC75.150e-837.78hydroxylysine kinase-like isoform X1 n=4 Tax=Micro... [more]
A0A6P7WYM3_9AMPH5.190e-841.98hydroxylysine kinase n=1 Tax=Microcaecilia unicolo... [more]
UPI001899B8446.920e-837.78hydroxylysine kinase n=1 Tax=Nematolebias whitei T... [more]
I3K3N3_ORENI3.360e-740.00APH domain-containing protein n=12 Tax=Pseudocreni... [more]
UPI00192F84F41.440e-536.05hydroxylysine kinase n=1 Tax=Crotalus tigris TaxID... [more]
UPI00062AB9B24.810e-539.02hydroxylysine kinase isoform X1 n=2 Tax=Dasypus no... [more]
UPI0018D028C45.050e-530.77hydroxylysine kinase isoform X1 n=2 Tax=Plutella x... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11732contigP-wetherbeei_contig11732:1206..1753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog296587.XP_002505724.1
PFAMsAPH
Model size273
Max annot lvl3041|Chlorophyta
KEGG rclassRC00002,RC00428
KEGG koko:K18201
KEGG ReactionR03378
KEGG Pathwayko00310,ko01100,map00310,map01100
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.6e-10
EggNOG OGsCOG2334@1|root,2QT7T@2759|Eukaryota,381S5@33090|Viridiplantae,34NSU@3041|Chlorophyta
EC2.7.1.81
DescriptionPhosphotransferase enzyme family
Cds size246
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185924.3871422-UTR-P-wetherbeei_contig11732:1205..12321683185924.3871422-UTR-P-wetherbeei_contig11732:1205..1232Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11732 1206..1232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185924.3959801-CDS-P-wetherbeei_contig11732:1232..13611683185924.3959801-CDS-P-wetherbeei_contig11732:1232..1361Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11732 1233..1361 +
1683185924.4031777-CDS-P-wetherbeei_contig11732:1636..17531683185924.4031777-CDS-P-wetherbeei_contig11732:1636..1753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11732 1637..1753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11732.1.1prot_P-wetherbeei_contig11732.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11732 1233..1753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11732.1.1

>prot_P-wetherbeei_contig11732.1.1 ID=prot_P-wetherbeei_contig11732.1.1|Name=mRNA_P-wetherbeei_contig11732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MDQASTIAALLFGLTSASVESLPSYDDNNFKITASSGDIYTLKVQNGVES
EDLSLLEAQSALAMRLNANGCTCPAAVATAGG
back to top

mRNA from alignment at P-wetherbeei_contig11732:1206..1753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11732.1.1 ID=mRNA_P-wetherbeei_contig11732.1.1|Name=mRNA_P-wetherbeei_contig11732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=548bp|location=Sequence derived from alignment at P-wetherbeei_contig11732:1206..1753+ (Phaeothamnion wetherbeei SAG_119_79)
CGGAAGCGCTTGAAGCCGAGCGTAGCGATGGACCAGGCGTCTACCATCGC CGCGCTGCTTTTTGGCCTCACATCGGCTTCGGTAGAGAGCCTGCCGAGCT ATGATGATAATAACTTCAAAATCACGGCGTCCAGTGGAGACATCTACACG TTAAAGGTGCGCCGCACACATAAAAACGGCTTGCGAGTAGCCTGAAATCA ATTTTGGGCTCAGTTTTGAAGAGCGCTGCGTCTTGTTTGGATAGAACCCT CATGCAGCCTCGAGATTTAGATCGCCTGGGATCAATTTGCAGCGTCCCGA AAATCCCGAGTTATCTTCCAAGACCCCTCAATCGTCGCCGGAGCCGCTGC TGCTATCGCCGACGACGCCGACGACGCGTCCAACAACTCTCTCCTGCGCC CCAACCATCTCGAATAAAACTGAATCTGCAGGTGCAGAACGGCGTGGAAT CGGAGGACCTGTCGCTACTCGAGGCGCAGAGCGCTCTGGCGATGCGGCTG AACGCAAACGGATGCACGTGCCCGGCGGCGGTGGCGACGGCGGGCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11732:1206..1753+

>mRNA_P-wetherbeei_contig11732.1.1 ID=mRNA_P-wetherbeei_contig11732.1.1|Name=mRNA_P-wetherbeei_contig11732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig11732:1206..1753+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCAGGCGTCTACCATCGCCGCGCTGCTTTTTGGCCTCACATCGGC
TTCGGTAGAGAGCCTGCCGAGCTATGATGATAATAACTTCAAAATCACGG
CGTCCAGTGGAGACATCTACACGTTAAAGGTGCAGAACGGCGTGGAATCG
GAGGACCTGTCGCTACTCGAGGCGCAGAGCGCTCTGGCGATGCGGCTGAA
CGCAAACGGATGCACGTGCCCGGCGGCGGTGGCGACGGCGGGCGGC
back to top