mRNA_P-wetherbeei_contig11715.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11715.1.1
Unique NamemRNA_P-wetherbeei_contig11715.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 296 bits (758), Expect = 8.950e-88
Identity = 234/516 (45.35%), Postives = 279/516 (54.07%), Query Frame = 1
Query:    1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLL---------AQAAGGAGSAXXXXXXXXXXXXSNAVKGXXXXXXXXXRGGAGIRIVVDVPLRVPLQGAELREH-EEGEARXXXXXXXXXXXXXXXXXXKGQLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAINASLFHRYSAPQHLMFRHHEPHVESDAYGVRESESIGWLAEKMQRHDADVDG--------------AAAAGVAGAAVAVPTDGSDLADAAXXXATGGKTTGDRIFALDASPGGTGGGANNGGDEDAEDGLLRPESAFYQDVGGMLPIKVMTQKVELRVACKVAYVDMEGVSDGRSTRQILAKVAPKRLILVGASEKAAAALAADVR 1476
            L E++ ATVR GGNVL+P D +GRVLELL LLD HWT+++LG Y L LLH+MAFNT E+AKSQLEWMSD I + FD+QR NPFE++HV + HSLEEL ALG  P VV+ TD SLDFGF+KALLL WA    N VLLT RGHG++ AR+LL         A AAGG   A                                 RIVV+VP RVPL G EL  + EE    XXXXXXXXXXXXX     +GQ +A  XXXXXXXXXX                                          R +NASLF ++S PQHLMF  H+  VE D YGVRE+E I WLA  MQ  + D  G              A AA ++ A   V   G   AD A   AT    T                              LR +SAFY+D G +LP KV+ Q+ EL V  +VAY+DMEG+SDGRS R +LA V P++L+LVG S KA +AL+ D R
Sbjct:  273 LTEMVTATVRKGGNVLLPCDTAGRVLELLLLLDHHWTRNKLGSYPLVLLHSMAFNTGEFAKSQLEWMSDAISKQFDLQRSNPFEMRHVAMAHSLEELQALGTGPMVVLATDLSLDFGFAKALLLAWAADPLNLVLLTQRGHGDSVARELLRGVTAHVRAAAAAGGVEEAPKQ------------------------------RIVVEVPERVPLVGEELTAYLEEXXXXXXXXXXXXXXXXXAEEMERGQGLADSXXXXXXXXXXAAVAHVNKRR--------------------------------RLVNASLFSKFSKPQHLMFGFHDAMVEVDDYGVREAEPIAWLAVSMQERN-DTSGLIHEEGQRRLLEQQATAAHLSSAMQVV---GLSDADGAVSAATAAAQT-----------------------------ALRSDSAFYEDTG-VLPSKVVLQERELVVRARVAYIDMEGLSDGRSVRNLLATVGPRQLVLVGGSVKAVSALSEDAR 692          
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 8.230e-79
Identity = 249/548 (45.44%), Postives = 296/548 (54.01%), Query Frame = 1
Query:    1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQA------AG---GAGSAXXXXXXXXXXXXSNAVKGXXXXXXXXXRGG-----------------AGIRIVVDVPLRVPLQGAELREHEEGEARXXXXXXXXXXXXXXXXXXKGQLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAINASLFHRYSAPQHLMFRHHEPHVESDAYGVRESESIGWLAEKMQRHDADVDGAAAAGVAGAAVAVPTDGSDLADAAXXXATGGKTTGDR------------------------------IFALDASPGGTGGGANNGGDEDAEDGLLRPESAFYQDVGGMLPIKVMTQKVELRVACKVAYVDMEGVSDGRSTRQILAKVAPKRLILVGASEKAAAALAADVR 1476
            L+  +M TVRGGGNVL+PTD +GRVLELL LL+ +W +HRLG Y+L LLH  AFNTCE+AKSQLEWMS+DIGR FD+QR NPFEL++V + HSLEELD LGD PKVVM TD SLDFGFSKALLLRWA    NT+LLT RGHGNTTAR L+A++      AG    A  A            S AV   XXXXXXXX                    A + + V VP+RVPL G EL+   + E RXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXX                                    RAI ASLF +YS PQHLMF +++PHV +D YGV+E+E IGWLA  MQ+ ++++  A                       XXX                                        + AL AS G                     ESAF+QD  G +P K+  +  EL V C+V YVD EG+SDG S +     +APK LI+ G S +A A L + VR
Sbjct:  354 LISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKSEYRKSEAGRRAAAKDAAAAAGRGARVGYSGAVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMVVPVTVPVRVPLAGEELKAFRDEENRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRR---------------------------------RAIVASLFSKYSKPQHLMFGYYDPHVPTDEYGVKETEPIGWLAAAMQQQNSEMPAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPVVDALRASAG------------------EGKESAFFQD-SGAVPTKLEQEVQELEVLCRVVYVDSEGLSDGTSVKNTAVTLAPKMLIVTGGSRRAKAELVSYVR 849          
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: L8GYA6_ACACA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYA6_ACACA)

HSP 1 Score: 159 bits (402), Expect = 2.820e-38
Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQ 456
            LL+  M T++G GNVL+PTD +GRVLELL   D HW  +RL  Y L LL   A+NT E+AKSQLEWMS  + + FD+ RVNPFE K VRLCHS+EEL+AL   P VV+ T ASL++GF++ L + W+   R+ V+ T R    T    +L Q
Sbjct:  182 LLDTTMKTLKGDGNVLLPTDTAGRVLELLLTFDQHWAYYRLSQYGLVLLEKQAYNTIEFAKSQLEWMSTAVQKSFDLDRVNPFEFKFVRLCHSVEELEAL-PKPLVVLATTASLEWGFARDLFVEWSSNPRHAVIFTDRPQPGTLGHLVLTQ 332          
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: UPI0015ABF36A (cleavage and polyadenylation specificity factor subunit 2-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ABF36A)

HSP 1 Score: 145 bits (365), Expect = 5.990e-35
Identity = 74/152 (48.68%), Postives = 103/152 (67.76%), Query Frame = 1
Query:    1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLG--GYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLL 450
            L+  I+ T+R  GNVLI  D SGRVLEL H++D  W     G   Y LALL+ +++N  E+AKSQ+EWMS+ I + F+ QR NPF+ KHV+LCHSL EL  + + PKVV+ +   ++ GFS+ L ++W   ERN+++LTSRG   T AR L+
Sbjct:  219 LMTNILKTLRSNGNVLIAVDTSGRVLELSHMMDQLWRSKDSGLMAYSLALLNNVSYNVVEFAKSQVEWMSEKIMKNFEGQRSNPFQFKHVQLCHSLGELSKIPE-PKVVLASMPGMECGFSRELFIQWCGNERNSIILTSRGLPGTLARTLI 369          
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A7R9T8A6_MICPS (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9T8A6_MICPS)

HSP 1 Score: 149 bits (377), Expect = 6.680e-35
Identity = 71/149 (47.65%), Postives = 105/149 (70.47%), Query Frame = 1
Query:    1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQL 447
            ++ VI+ +VR  GNVLIP D +GRVLELL LL+ +W+Q +LG Y+L LL  +A+NT E+A+S LEWM +++ R FD+ R N F+ +++ LCHS+EEL AL   PKVV+++  SL+ G S+ L + WA   RN ++LT R    T +R++
Sbjct:  306 IMNVILRSVRQDGNVLIPIDPAGRVLELLLLLEENWSQKQLGAYQLVLLSTVAYNTLEFARSHLEWMGENVSRNFDIDRHNVFKTRYLTLCHSIEELHALRPGPKVVLSSFGSLECGASRHLFVEWASDPRNLIILTDRTEPGTLSREV 454          
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A5D6XPU7_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPU7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 8.780e-35
Identity = 78/158 (49.37%), Postives = 110/158 (69.62%), Query Frame = 1
Query:    1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQAAGGAG 474
            ++  I+ TVRGGG+VLIPTD+SGRVLEL+ +LD +W Q++L    +ALLH M++ T + A++ LEW ++ I + FD+ R NPF+  H+ L HSLEELD L  +PKVV+TT  SL+ GFSK L LRWAP  RN+V+ T+     + A +++A   G  G
Sbjct:  459 IMMEILKTVRGGGSVLIPTDSSGRVLELMRVLDQYWIQNKLRD-PIALLHDMSYYTPKAAQAMLEWCNERIAKNFDVGRQNPFQFSHIHLIHSLEELDNL-PSPKVVLTTSPSLECGFSKDLFLRWAPDPRNSVVFTTNSPPKSFAARVMALGEGRGG 614          
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A7S0SM63_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SM63_9CHLO)

HSP 1 Score: 145 bits (366), Expect = 1.950e-34
Identity = 72/149 (48.32%), Postives = 99/149 (66.44%), Query Frame = 1
Query:    1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQL 447
            ++E I+  VR  GNVLIP D +GRVLELL +L+  W Q +LG Y+L LL  +A+NT E+A+S LEWM +++GR FD  R N F  +++ LCHS EEL AL   PKVV+ +  SL+ G S+ L  +WA   RN V+LT R    + AR++
Sbjct:    1 MVEAILRAVRQDGNVLIPMDPAGRVLELLLMLEDRWAQKQLGAYQLVLLTTVAYNTLEFARSHLEWMGENVGRSFDRDRHNAFNTRYLTLCHSTEELHALRPGPKVVLASFGSLEAGPSRHLFTQWASDPRNLVVLTDRTQPGSLAREV 149          
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: M4C192_HYAAE (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C192_HYAAE)

HSP 1 Score: 147 bits (371), Expect = 2.370e-34
Identity = 75/155 (48.39%), Postives = 108/155 (69.68%), Query Frame = 1
Query:    1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQAAG 465
            ++  I+ TVR GGNVLIPTD+SGRVLEL+ +LD +W Q++L    +ALLH M++ T + A++ LEW +D I + FD+ R NPF+  H+ L H+LEELDAL  +PKVV+ T  +L+ GF+K + +RWAP  RNT++ TS     + A ++L  A G
Sbjct:  219 IMMEILKTVRNGGNVLIPTDSSGRVLELMRVLDQYWIQNKLRD-PIALLHDMSYYTPKAAQAMLEWCNDRIAKNFDVGRQNPFQFSHIHLVHTLEELDAL-PSPKVVLATSPNLECGFAKDIFIRWAPDPRNTIIFTSTTPETSFAYRVLTLAKG 371          
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A2M4ATS4_9DIPT (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=2 Tax=Anopheles triannulatus TaxID=58253 RepID=A0A2M4ATS4_9DIPT)

HSP 1 Score: 145 bits (366), Expect = 3.650e-34
Identity = 84/217 (38.71%), Postives = 121/217 (55.76%), Query Frame = 1
Query:   13 IMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLG--GYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQAAGGAGSAXXXXXXXXXXXXSNAVKGXXXXXXXXXRGGAGIRIVVDVPLRVPLQGAELREH--EEGE 651
            I+ T+R  GNVL+  D +GRVLEL H+LD  W     G   Y LALL+ +++N  E+AKSQ+EWMSD + + F+  R NPF  KH+RLCH++ +L A   +PKVV+ + A ++ GFS+ L ++WAP+  N++++T+R    T AR L+                                      GG G +I +DV  RV L+GAEL E+   EGE
Sbjct:  178 ILQTLRNNGNVLVTVDTAGRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLMKSFEGARNNPFTFKHLRLCHTMADL-AKVPSPKVVLASSADMESGFSRELFIQWAPQATNSIIITNRSSPGTLARDLI------------------------------------DNGGNGRKIEMDVRRRVELEGAELEEYMRTEGE 357          
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A7S0CYL9_MICPS (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CYL9_MICPS)

HSP 1 Score: 147 bits (371), Expect = 3.970e-34
Identity = 72/159 (45.28%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTAR--QLLAQAAGGA 471
            L++ ++  VR  GNVL+P D +GRVLELL LL+  W + +LG Y+L LL  +A+NT E+A+S LEWM +++GR FD  R+N F  +++ LCHSL+EL  L   PKVV+ +  SLD G ++AL   WA   +N ++LT+RG   + +R  ++LA+   GA
Sbjct:  295 LMKAVLRAVRSDGNVLVPVDPAGRVLELLLLLEERWAKQQLGAYQLVLLTTVAYNTMEFARSHLEWMGENVGRNFDRDRLNAFNTRYLTLCHSLDELKNLRPGPKVVLASFGSLDAGPARALFTEWAEDPKNLIVLTNRGAPGSLSRDVRVLAEQPPGA 453          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFV8_9STRA8.950e-8845.35Cleavage and polyadenylation specificity factor su... [more]
D7FQA4_ECTSI8.230e-7945.44Cleavage and polyadenylation specificity factor su... [more]
L8GYA6_ACACA2.820e-3851.97Cleavage and polyadenylation specificity factor su... [more]
UPI0015ABF36A5.990e-3548.68cleavage and polyadenylation specificity factor su... [more]
A0A7R9T8A6_MICPS6.680e-3547.65Cleavage and polyadenylation specificity factor su... [more]
A0A5D6XPU7_9STRA8.780e-3549.37Cleavage and polyadenylation specificity factor su... [more]
A0A7S0SM63_9CHLO1.950e-3448.32Cleavage and polyadenylation specificity factor su... [more]
M4C192_HYAAE2.370e-3448.39Cleavage and polyadenylation specificity factor su... [more]
A0A2M4ATS4_9DIPT3.650e-3438.71Cleavage and polyadenylation specificity factor su... [more]
A0A7S0CYL9_MICPS3.970e-3445.28Cleavage and polyadenylation specificity factor su... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11715contigP-wetherbeei_contig11715:352..2104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQA4
Preferred nameCPSF2
PFAMsBeta-Casp,CPSF100_C,Lactamase_B_6,RMMBL
Model size1482
Max annot lvl2759|Eukaryota
KEGG koko:K14402,ko:K17606
KEGG Pathwayko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Exons3
Evalue3.02e-78
EggNOG OGsCOG1236@1|root,KOG1135@2759|Eukaryota
DescriptionmRNA cleavage
Cds size1467
COG categoryJ
BRITEko00000,ko00001,ko01009,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.7501478-CDS-P-wetherbeei_contig11715:351..6491683185923.7501478-CDS-P-wetherbeei_contig11715:351..649Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11715 352..649 -
1683185923.7591672-CDS-P-wetherbeei_contig11715:802..16681683185923.7591672-CDS-P-wetherbeei_contig11715:802..1668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11715 803..1668 -
1683185923.7666965-CDS-P-wetherbeei_contig11715:1786..20891683185923.7666965-CDS-P-wetherbeei_contig11715:1786..2089Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11715 1787..2089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.7738273-UTR-P-wetherbeei_contig11715:2089..21041683185923.7738273-UTR-P-wetherbeei_contig11715:2089..2104Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11715 2090..2104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11715.1.1prot_P-wetherbeei_contig11715.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11715 352..2089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11715.1.1

>prot_P-wetherbeei_contig11715.1.1 ID=prot_P-wetherbeei_contig11715.1.1|Name=mRNA_P-wetherbeei_contig11715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=489bp
MATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFN
TCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPK
VVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQAAG
GAGSAGGGVGGTGGGIGSNAVKGGGSGCDSGGRGGAGIRIVVDVPLRVPL
QGAELREHEEGEARRRRREAEEEQRLQAEEMEKGQLVADSDDEDDDDTAA
AGGGGNGGSGGGGRKSSSGSGGGGGDRRGNDDEGARRAAKRRRAINASLF
HRYSAPQHLMFRHHEPHVESDAYGVRESESIGWLAEKMQRHDADVDGAAA
AGVAGAAVAVPTDGSDLADAAAAAATGGKTTGDRIFALDASPGGTGGGAN
NGGDEDAEDGLLRPESAFYQDVGGMLPIKVMTQKVELRVACKVAYVDMEG
VSDGRSTRQILAKVAPKRLILVGASEKAAAALAADVRAA
back to top

mRNA from alignment at P-wetherbeei_contig11715:352..2104-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11715.1.1 ID=mRNA_P-wetherbeei_contig11715.1.1|Name=mRNA_P-wetherbeei_contig11715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1753bp|location=Sequence derived from alignment at P-wetherbeei_contig11715:352..2104- (Phaeothamnion wetherbeei SAG_119_79)
CTCTTGGAAGTCATCATGGCCACCGTCCGCGGCGGCGGTAACGTCTTGAT CCCGACGGACGCCTCCGGACGCGTCCTGGAGCTTCTGCACCTCCTGGACG CCCACTGGACGCAGCACCGGCTCGGTGGCTACCGGCTGGCGCTGCTGCAT GCCATGGCCTTCAACACGTGCGAGTACGCCAAGTCGCAGCTCGAGTGGAT GAGCGACGACATTGGCCGCGGCTTTGACATGCAGCGCGTCAACCCGTTCG AGCTAAAGCATGTCCGCCTCTGCCATTCGCTGGAGGAGCTGGATGCGCTG GGCGACGCTCCGAAAGTGGTAAGTGATTGCCTGTCTGTCTCGGTGGAGGT TAACGGCTACTGGAAATTGAGTTGCCGCCACATCTTCTTTACTCACCATT CTTAGGCACCTTTTTCTCATTTTAACTCGTCATTAGGTCATGACCACGGA CGCGTCGCTTGACTTTGGCTTCAGCAAGGCTCTCCTGCTGCGGTGGGCGC CCCGCGAGCGCAACACGGTGCTACTGACCTCGCGCGGCCACGGCAACACC ACGGCCCGCCAGCTGCTGGCGCAGGCAGCCGGCGGCGCCGGCAGCGCCGG GGGCGGCGTCGGCGGCACCGGTGGCGGCATTGGAAGCAACGCCGTCAAAG GCGGCGGAAGTGGTTGCGACAGTGGCGGACGCGGCGGCGCTGGGATTCGG ATCGTGGTGGACGTGCCGCTGCGCGTGCCGCTGCAGGGCGCGGAGCTGCG GGAGCATGAGGAGGGCGAGGCGCGGCGGCGGCGGCGCGAGGCGGAGGAGG AGCAGCGCCTGCAGGCGGAAGAGATGGAGAAGGGCCAGCTTGTCGCCGAC TCTGATGACGAAGATGATGATGACACTGCCGCGGCTGGCGGAGGCGGGAA CGGCGGCAGCGGCGGTGGCGGCAGAAAAAGCAGCAGCGGCAGTGGCGGTG GCGGCGGCGACCGTCGCGGCAACGACGACGAGGGGGCACGGCGCGCCGCA AAGCGACGCAGGGCCATCAACGCGAGCCTCTTCCACCGCTACTCGGCGCC GCAGCATTTGATGTTCCGCCACCACGAGCCGCACGTCGAGTCGGACGCGT ACGGCGTGCGCGAGAGCGAATCCATCGGCTGGCTGGCCGAGAAGATGCAG CGACACGACGCCGACGTCGACGGCGCCGCTGCCGCGGGCGTCGCCGGCGC CGCCGTCGCCGTGCCGACGGACGGTAGTGACCTCGCGGACGCCGCCGCCG CCGCAGCCACCGGCGGGAAGACCACGGGGGACAGAATCTTCGCGCTGGAC GCGTCGGCCCCGGCATCGGCCGTGGGAGCGCTCGCCCGTGGCGTCAGCGG CGGGTTCGGCCTGGGGGCGCCGGCGCTCTTCGCAGCGGCGGCAGCGGCGG TGTCGGACGTCGGCGGTATTCTTGCCGGCGGCGGCATTGGTGGCCTCGGT AGCAGCAGCCCCGGCGGTACTGGCGGCGGCGCCAACAATGGCGGCGACGA AGACGCAGAAGACGGGCTGTTGCGGCCGGAATCCGCCTTCTATCAGGACG TTGGGGGTATGCTGCCCATCAAGGTGATGACGCAAAAGGTAGAGCTCCGC GTAGCCTGCAAGGTCGCCTACGTCGACATGGAAGGCGTCTCCGACGGCCG CTCCACCCGCCAGATCCTCGCGAAGGTCGCGCCCAAGCGGCTGATCCTCG TCGGCGCGTCCGAAAAAGCTGCTGCGGCGCTGGCGGCTGACGTGCGGGCT GCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11715:352..2104-

>mRNA_P-wetherbeei_contig11715.1.1 ID=mRNA_P-wetherbeei_contig11715.1.1|Name=mRNA_P-wetherbeei_contig11715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1467bp|location=Sequence derived from alignment at P-wetherbeei_contig11715:352..2104- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACCGTCCGCGGCGGCGGTAACGTCTTGATCCCGACGGACGCCTC
CGGACGCGTCCTGGAGCTTCTGCACCTCCTGGACGCCCACTGGACGCAGC
ACCGGCTCGGTGGCTACCGGCTGGCGCTGCTGCATGCCATGGCCTTCAAC
ACGTGCGAGTACGCCAAGTCGCAGCTCGAGTGGATGAGCGACGACATTGG
CCGCGGCTTTGACATGCAGCGCGTCAACCCGTTCGAGCTAAAGCATGTCC
GCCTCTGCCATTCGCTGGAGGAGCTGGATGCGCTGGGCGACGCTCCGAAA
GTGGTCATGACCACGGACGCGTCGCTTGACTTTGGCTTCAGCAAGGCTCT
CCTGCTGCGGTGGGCGCCCCGCGAGCGCAACACGGTGCTACTGACCTCGC
GCGGCCACGGCAACACCACGGCCCGCCAGCTGCTGGCGCAGGCAGCCGGC
GGCGCCGGCAGCGCCGGGGGCGGCGTCGGCGGCACCGGTGGCGGCATTGG
AAGCAACGCCGTCAAAGGCGGCGGAAGTGGTTGCGACAGTGGCGGACGCG
GCGGCGCTGGGATTCGGATCGTGGTGGACGTGCCGCTGCGCGTGCCGCTG
CAGGGCGCGGAGCTGCGGGAGCATGAGGAGGGCGAGGCGCGGCGGCGGCG
GCGCGAGGCGGAGGAGGAGCAGCGCCTGCAGGCGGAAGAGATGGAGAAGG
GCCAGCTTGTCGCCGACTCTGATGACGAAGATGATGATGACACTGCCGCG
GCTGGCGGAGGCGGGAACGGCGGCAGCGGCGGTGGCGGCAGAAAAAGCAG
CAGCGGCAGTGGCGGTGGCGGCGGCGACCGTCGCGGCAACGACGACGAGG
GGGCACGGCGCGCCGCAAAGCGACGCAGGGCCATCAACGCGAGCCTCTTC
CACCGCTACTCGGCGCCGCAGCATTTGATGTTCCGCCACCACGAGCCGCA
CGTCGAGTCGGACGCGTACGGCGTGCGCGAGAGCGAATCCATCGGCTGGC
TGGCCGAGAAGATGCAGCGACACGACGCCGACGTCGACGGCGCCGCTGCC
GCGGGCGTCGCCGGCGCCGCCGTCGCCGTGCCGACGGACGGTAGTGACCT
CGCGGACGCCGCCGCCGCCGCAGCCACCGGCGGGAAGACCACGGGGGACA
GAATCTTCGCGCTGGACGCCAGCCCCGGCGGTACTGGCGGCGGCGCCAAC
AATGGCGGCGACGAAGACGCAGAAGACGGGCTGTTGCGGCCGGAATCCGC
CTTCTATCAGGACGTTGGGGGTATGCTGCCCATCAAGGTGATGACGCAAA
AGGTAGAGCTCCGCGTAGCCTGCAAGGTCGCCTACGTCGACATGGAAGGC
GTCTCCGACGGCCGCTCCACCCGCCAGATCCTCGCGAAGGTCGCGCCCAA
GCGGCTGATCCTCGTCGGCGCGTCCGAAAAAGCTGCTGCGGCGCTGGCGG
CTGACGTGCGGGCTGCA
back to top