mRNA_P-wetherbeei_contig11715.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA) HSP 1 Score: 296 bits (758), Expect = 8.950e-88 Identity = 234/516 (45.35%), Postives = 279/516 (54.07%), Query Frame = 1 Query: 1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLL---------AQAAGGAGSAXXXXXXXXXXXXSNAVKGXXXXXXXXXRGGAGIRIVVDVPLRVPLQGAELREH-EEGEARXXXXXXXXXXXXXXXXXXKGQLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAINASLFHRYSAPQHLMFRHHEPHVESDAYGVRESESIGWLAEKMQRHDADVDG--------------AAAAGVAGAAVAVPTDGSDLADAAXXXATGGKTTGDRIFALDASPGGTGGGANNGGDEDAEDGLLRPESAFYQDVGGMLPIKVMTQKVELRVACKVAYVDMEGVSDGRSTRQILAKVAPKRLILVGASEKAAAALAADVR 1476 L E++ ATVR GGNVL+P D +GRVLELL LLD HWT+++LG Y L LLH+MAFNT E+AKSQLEWMSD I + FD+QR NPFE++HV + HSLEEL ALG P VV+ TD SLDFGF+KALLL WA N VLLT RGHG++ AR+LL A AAGG A RIVV+VP RVPL G EL + EE XXXXXXXXXXXXX +GQ +A XXXXXXXXXX R +NASLF ++S PQHLMF H+ VE D YGVRE+E I WLA MQ + D G A AA ++ A V G AD A AT T LR +SAFY+D G +LP KV+ Q+ EL V +VAY+DMEG+SDGRS R +LA V P++L+LVG S KA +AL+ D R Sbjct: 273 LTEMVTATVRKGGNVLLPCDTAGRVLELLLLLDHHWTRNKLGSYPLVLLHSMAFNTGEFAKSQLEWMSDAISKQFDLQRSNPFEMRHVAMAHSLEELQALGTGPMVVLATDLSLDFGFAKALLLAWAADPLNLVLLTQRGHGDSVARELLRGVTAHVRAAAAAGGVEEAPKQ------------------------------RIVVEVPERVPLVGEELTAYLEEXXXXXXXXXXXXXXXXXAEEMERGQGLADSXXXXXXXXXXAAVAHVNKRR--------------------------------RLVNASLFSKFSKPQHLMFGFHDAMVEVDDYGVREAEPIAWLAVSMQERN-DTSGLIHEEGQRRLLEQQATAAHLSSAMQVV---GLSDADGAVSAATAAAQT-----------------------------ALRSDSAFYEDTG-VLPSKVVLQERELVVRARVAYIDMEGLSDGRSVRNLLATVGPRQLVLVGGSVKAVSALSEDAR 692
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI) HSP 1 Score: 275 bits (702), Expect = 8.230e-79 Identity = 249/548 (45.44%), Postives = 296/548 (54.01%), Query Frame = 1 Query: 1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQA------AG---GAGSAXXXXXXXXXXXXSNAVKGXXXXXXXXXRGG-----------------AGIRIVVDVPLRVPLQGAELREHEEGEARXXXXXXXXXXXXXXXXXXKGQLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAINASLFHRYSAPQHLMFRHHEPHVESDAYGVRESESIGWLAEKMQRHDADVDGAAAAGVAGAAVAVPTDGSDLADAAXXXATGGKTTGDR------------------------------IFALDASPGGTGGGANNGGDEDAEDGLLRPESAFYQDVGGMLPIKVMTQKVELRVACKVAYVDMEGVSDGRSTRQILAKVAPKRLILVGASEKAAAALAADVR 1476 L+ +M TVRGGGNVL+PTD +GRVLELL LL+ +W +HRLG Y+L LLH AFNTCE+AKSQLEWMS+DIGR FD+QR NPFEL++V + HSLEELD LGD PKVVM TD SLDFGFSKALLLRWA NT+LLT RGHGNTTAR L+A++ AG A A S AV XXXXXXXX A + + V VP+RVPL G EL+ + E RXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXX RAI ASLF +YS PQHLMF +++PHV +D YGV+E+E IGWLA MQ+ ++++ A XXX + AL AS G ESAF+QD G +P K+ + EL V C+V YVD EG+SDG S + +APK LI+ G S +A A L + VR Sbjct: 354 LISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKSEYRKSEAGRRAAAKDAAAAAGRGARVGYSGAVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMVVPVTVPVRVPLAGEELKAFRDEENRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRR---------------------------------RAIVASLFSKYSKPQHLMFGYYDPHVPTDEYGVKETEPIGWLAAAMQQQNSEMPAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPVVDALRASAG------------------EGKESAFFQD-SGAVPTKLEQEVQELEVLCRVVYVDSEGLSDGTSVKNTAVTLAPKMLIVTGGSRRAKAELVSYVR 849
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: L8GYA6_ACACA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYA6_ACACA) HSP 1 Score: 159 bits (402), Expect = 2.820e-38 Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 1 Query: 1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQ 456 LL+ M T++G GNVL+PTD +GRVLELL D HW +RL Y L LL A+NT E+AKSQLEWMS + + FD+ RVNPFE K VRLCHS+EEL+AL P VV+ T ASL++GF++ L + W+ R+ V+ T R T +L Q Sbjct: 182 LLDTTMKTLKGDGNVLLPTDTAGRVLELLLTFDQHWAYYRLSQYGLVLLEKQAYNTIEFAKSQLEWMSTAVQKSFDLDRVNPFEFKFVRLCHSVEELEAL-PKPLVVLATTASLEWGFARDLFVEWSSNPRHAVIFTDRPQPGTLGHLVLTQ 332
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: UPI0015ABF36A (cleavage and polyadenylation specificity factor subunit 2-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ABF36A) HSP 1 Score: 145 bits (365), Expect = 5.990e-35 Identity = 74/152 (48.68%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLG--GYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLL 450 L+ I+ T+R GNVLI D SGRVLEL H++D W G Y LALL+ +++N E+AKSQ+EWMS+ I + F+ QR NPF+ KHV+LCHSL EL + + PKVV+ + ++ GFS+ L ++W ERN+++LTSRG T AR L+ Sbjct: 219 LMTNILKTLRSNGNVLIAVDTSGRVLELSHMMDQLWRSKDSGLMAYSLALLNNVSYNVVEFAKSQVEWMSEKIMKNFEGQRSNPFQFKHVQLCHSLGELSKIPE-PKVVLASMPGMECGFSRELFIQWCGNERNSIILTSRGLPGTLARTLI 369
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A7R9T8A6_MICPS (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9T8A6_MICPS) HSP 1 Score: 149 bits (377), Expect = 6.680e-35 Identity = 71/149 (47.65%), Postives = 105/149 (70.47%), Query Frame = 1 Query: 1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQL 447 ++ VI+ +VR GNVLIP D +GRVLELL LL+ +W+Q +LG Y+L LL +A+NT E+A+S LEWM +++ R FD+ R N F+ +++ LCHS+EEL AL PKVV+++ SL+ G S+ L + WA RN ++LT R T +R++ Sbjct: 306 IMNVILRSVRQDGNVLIPIDPAGRVLELLLLLEENWSQKQLGAYQLVLLSTVAYNTLEFARSHLEWMGENVSRNFDIDRHNVFKTRYLTLCHSIEELHALRPGPKVVLSSFGSLECGASRHLFVEWASDPRNLIILTDRTEPGTLSREV 454
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A5D6XPU7_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPU7_9STRA) HSP 1 Score: 149 bits (376), Expect = 8.780e-35 Identity = 78/158 (49.37%), Postives = 110/158 (69.62%), Query Frame = 1 Query: 1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQAAGGAG 474 ++ I+ TVRGGG+VLIPTD+SGRVLEL+ +LD +W Q++L +ALLH M++ T + A++ LEW ++ I + FD+ R NPF+ H+ L HSLEELD L +PKVV+TT SL+ GFSK L LRWAP RN+V+ T+ + A +++A G G Sbjct: 459 IMMEILKTVRGGGSVLIPTDSSGRVLELMRVLDQYWIQNKLRD-PIALLHDMSYYTPKAAQAMLEWCNERIAKNFDVGRQNPFQFSHIHLIHSLEELDNL-PSPKVVLTTSPSLECGFSKDLFLRWAPDPRNSVVFTTNSPPKSFAARVMALGEGRGG 614
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A7S0SM63_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SM63_9CHLO) HSP 1 Score: 145 bits (366), Expect = 1.950e-34 Identity = 72/149 (48.32%), Postives = 99/149 (66.44%), Query Frame = 1 Query: 1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQL 447 ++E I+ VR GNVLIP D +GRVLELL +L+ W Q +LG Y+L LL +A+NT E+A+S LEWM +++GR FD R N F +++ LCHS EEL AL PKVV+ + SL+ G S+ L +WA RN V+LT R + AR++ Sbjct: 1 MVEAILRAVRQDGNVLIPMDPAGRVLELLLMLEDRWAQKQLGAYQLVLLTTVAYNTLEFARSHLEWMGENVGRSFDRDRHNAFNTRYLTLCHSTEELHALRPGPKVVLASFGSLEAGPSRHLFTQWASDPRNLVVLTDRTQPGSLAREV 149
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: M4C192_HYAAE (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C192_HYAAE) HSP 1 Score: 147 bits (371), Expect = 2.370e-34 Identity = 75/155 (48.39%), Postives = 108/155 (69.68%), Query Frame = 1 Query: 1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQAAG 465 ++ I+ TVR GGNVLIPTD+SGRVLEL+ +LD +W Q++L +ALLH M++ T + A++ LEW +D I + FD+ R NPF+ H+ L H+LEELDAL +PKVV+ T +L+ GF+K + +RWAP RNT++ TS + A ++L A G Sbjct: 219 IMMEILKTVRNGGNVLIPTDSSGRVLELMRVLDQYWIQNKLRD-PIALLHDMSYYTPKAAQAMLEWCNDRIAKNFDVGRQNPFQFSHIHLVHTLEELDAL-PSPKVVLATSPNLECGFAKDIFIRWAPDPRNTIIFTSTTPETSFAYRVLTLAKG 371
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A2M4ATS4_9DIPT (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=2 Tax=Anopheles triannulatus TaxID=58253 RepID=A0A2M4ATS4_9DIPT) HSP 1 Score: 145 bits (366), Expect = 3.650e-34 Identity = 84/217 (38.71%), Postives = 121/217 (55.76%), Query Frame = 1 Query: 13 IMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLG--GYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTARQLLAQAAGGAGSAXXXXXXXXXXXXSNAVKGXXXXXXXXXRGGAGIRIVVDVPLRVPLQGAELREH--EEGE 651 I+ T+R GNVL+ D +GRVLEL H+LD W G Y LALL+ +++N E+AKSQ+EWMSD + + F+ R NPF KH+RLCH++ +L A +PKVV+ + A ++ GFS+ L ++WAP+ N++++T+R T AR L+ GG G +I +DV RV L+GAEL E+ EGE Sbjct: 178 ILQTLRNNGNVLVTVDTAGRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLMKSFEGARNNPFTFKHLRLCHTMADL-AKVPSPKVVLASSADMESGFSRELFIQWAPQATNSIIITNRSSPGTLARDLI------------------------------------DNGGNGRKIEMDVRRRVELEGAELEEYMRTEGE 357
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Match: A0A7S0CYL9_MICPS (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CYL9_MICPS) HSP 1 Score: 147 bits (371), Expect = 3.970e-34 Identity = 72/159 (45.28%), Postives = 107/159 (67.30%), Query Frame = 1 Query: 1 LLEVIMATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNTCEYAKSQLEWMSDDIGRGFDMQRVNPFELKHVRLCHSLEELDALGDAPKVVMTTDASLDFGFSKALLLRWAPRERNTVLLTSRGHGNTTAR--QLLAQAAGGA 471 L++ ++ VR GNVL+P D +GRVLELL LL+ W + +LG Y+L LL +A+NT E+A+S LEWM +++GR FD R+N F +++ LCHSL+EL L PKVV+ + SLD G ++AL WA +N ++LT+RG + +R ++LA+ GA Sbjct: 295 LMKAVLRAVRSDGNVLVPVDPAGRVLELLLLLEERWAKQQLGAYQLVLLTTVAYNTMEFARSHLEWMGENVGRNFDRDRLNAFNTRYLTLCHSLDELKNLRPGPKVVLASFGSLDAGPARALFTEWAEDPKNLIVLTNRGAPGSLSRDVRVLAEQPPGA 453 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11715.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig11715.1.1 >prot_P-wetherbeei_contig11715.1.1 ID=prot_P-wetherbeei_contig11715.1.1|Name=mRNA_P-wetherbeei_contig11715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=489bp MATVRGGGNVLIPTDASGRVLELLHLLDAHWTQHRLGGYRLALLHAMAFNback to top mRNA from alignment at P-wetherbeei_contig11715:352..2104- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig11715.1.1 ID=mRNA_P-wetherbeei_contig11715.1.1|Name=mRNA_P-wetherbeei_contig11715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1753bp|location=Sequence derived from alignment at P-wetherbeei_contig11715:352..2104- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig11715:352..2104- >mRNA_P-wetherbeei_contig11715.1.1 ID=mRNA_P-wetherbeei_contig11715.1.1|Name=mRNA_P-wetherbeei_contig11715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1467bp|location=Sequence derived from alignment at P-wetherbeei_contig11715:352..2104- (Phaeothamnion wetherbeei SAG_119_79)back to top |